Wall clock time and date at job start Sun Mar 7 2021 14:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99847 * 2 1 4 4 O 1.20829 * 119.99879 * 359.71974 * 3 2 1 5 5 C 1.50703 * 119.99808 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.46754 * 179.72013 * 5 3 2 7 7 H 1.09000 * 112.84880 * 314.66662 * 6 5 3 8 8 C 1.53780 * 113.61226 * 85.86341 * 6 5 3 9 9 C 1.53950 * 87.01861 * 139.94968 * 8 6 5 10 10 H 1.09003 * 113.53832 * 89.19102 * 9 8 6 11 11 N 1.46504 * 113.74359 * 220.05319 * 9 8 6 12 12 C 1.34771 * 120.00303 * 252.60042 * 11 9 8 13 13 O 1.21284 * 120.00092 * 359.97438 * 12 11 9 14 14 C 1.50700 * 120.00137 * 179.97438 * 12 11 9 15 15 C 1.53001 * 109.47272 * 300.00086 * 14 12 11 16 16 O 1.42906 * 109.47239 * 179.97438 * 14 12 11 17 17 C 1.35898 * 116.99758 * 204.91480 * 16 14 12 18 18 C 1.38738 * 120.05207 * 174.25248 * 17 16 14 19 19 C 1.38148 * 119.94272 * 179.74371 * 18 17 16 20 20 C 1.38262 * 120.05247 * 0.51267 * 19 18 17 21 21 C 1.50707 * 119.94337 * 179.74374 * 20 19 18 22 22 O 1.42898 * 109.46979 * 120.01960 * 21 20 19 23 23 Si 1.86303 * 109.46811 * 0.02562 * 21 20 19 24 24 C 1.38270 * 120.11547 * 359.76756 * 20 19 18 25 25 C 1.38142 * 120.05316 * 359.97438 * 24 20 19 26 26 C 1.53775 * 113.61142 * 183.46601 * 6 5 3 27 27 H 1.08993 * 109.47467 * 300.00398 * 1 2 3 28 28 H 1.08997 * 109.46731 * 60.00537 * 1 2 3 29 29 H 1.09006 * 109.46582 * 180.02562 * 1 2 3 30 30 H 1.08989 * 109.46940 * 299.71709 * 5 3 2 31 31 H 1.08998 * 109.46930 * 59.72285 * 5 3 2 32 32 H 1.08999 * 113.61695 * 254.53038 * 8 6 5 33 33 H 1.09007 * 113.61748 * 25.42904 * 8 6 5 34 34 H 0.97009 * 119.99757 * 72.59520 * 11 9 8 35 35 H 1.09004 * 109.47113 * 59.99909 * 14 12 11 36 36 H 1.08996 * 109.46804 * 59.99323 * 15 14 12 37 37 H 1.08990 * 109.47099 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.46463 * 299.99670 * 15 14 12 39 39 H 1.07997 * 120.02686 * 359.97438 * 18 17 16 40 40 H 1.07995 * 119.96965 * 180.28000 * 19 18 17 41 41 H 1.09001 * 109.47120 * 240.02534 * 21 20 19 42 42 H 0.96699 * 114.00095 * 300.00068 * 22 21 20 43 43 H 1.48496 * 109.99970 * 58.68256 * 23 21 20 44 44 H 1.48500 * 109.99939 * 180.02562 * 23 21 20 45 45 H 1.08001 * 119.97212 * 179.97438 * 24 20 19 46 46 H 1.08002 * 120.02278 * 180.02562 * 25 24 20 47 47 H 1.09001 * 113.61593 * 334.57201 * 26 6 5 48 48 H 1.09004 * 113.61297 * 105.47330 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0051 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0075 7 1 3.4428 3.3449 -0.7246 8 6 4.0774 3.3682 1.3950 9 6 5.3578 4.0785 0.9195 10 1 5.1718 5.0477 0.4568 11 7 6.4169 4.1249 1.9307 12 6 6.7108 5.2875 2.5459 13 8 6.0989 6.2954 2.2620 14 6 7.7998 5.3351 3.5865 15 6 7.4492 4.3873 4.7354 16 8 7.9215 6.6677 4.0880 17 6 9.1252 7.0230 4.6095 18 6 9.3516 8.3335 5.0046 19 6 10.5741 8.6911 5.5393 20 6 11.5752 7.7465 5.6709 21 6 12.9099 8.1406 6.2492 22 8 13.1647 7.3718 7.4265 23 14 12.8880 9.9522 6.6834 24 6 11.3540 6.4411 5.2725 25 6 10.1314 6.0773 4.7422 26 6 5.5234 2.9337 -0.0938 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.9561 0.7850 0.8916 31 1 3.9559 0.7766 -0.8883 32 1 3.2553 4.0492 1.6151 33 1 4.2504 2.6414 2.1887 34 1 6.9065 3.3188 2.1576 35 1 8.7447 5.0283 3.1379 36 1 7.3565 3.3710 4.3525 37 1 8.2365 4.4221 5.4882 38 1 6.5043 4.6942 5.1839 39 1 8.5714 9.0727 4.8977 40 1 10.7493 9.7101 5.8512 41 1 13.6937 7.9523 5.5155 42 1 12.5054 7.4902 8.1239 43 1 11.8030 10.2276 7.6591 44 1 14.1989 10.3536 7.2542 45 1 12.1377 5.7052 5.3760 46 1 9.9591 5.0574 4.4315 47 1 6.0924 2.0879 0.2921 48 1 5.8671 3.2645 -1.0740 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_10157680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:23:58 Heat of formation + Delta-G solvation = -134.017724 kcal Electronic energy + Delta-G solvation = -29913.459796 eV Core-core repulsion = 25515.645585 eV Total energy + Delta-G solvation = -4397.814211 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.91083 -41.58774 -40.85084 -39.69793 -38.87351 -37.50020 -37.26059 -35.12424 -33.20781 -32.07152 -31.65209 -31.10581 -28.41487 -26.74288 -26.69302 -25.82906 -24.52091 -23.80714 -22.49051 -21.77538 -21.51841 -20.48443 -19.50635 -18.68804 -18.46260 -18.28583 -17.82667 -17.56126 -17.25376 -16.84224 -16.60270 -16.32616 -16.20331 -16.11816 -15.70457 -15.52746 -15.19264 -14.84921 -14.75016 -14.49405 -14.31793 -14.26935 -13.93728 -13.61654 -13.48013 -13.39128 -13.36450 -13.30070 -12.92804 -12.87857 -12.81669 -12.26960 -12.20153 -12.16511 -11.98799 -11.86780 -11.81314 -11.60255 -11.48185 -11.33176 -10.88898 -10.59514 -10.13088 -10.03818 -9.22329 -4.91417 0.24670 0.32784 1.18580 1.33231 1.38280 1.51724 1.60387 1.79912 1.95561 2.50902 2.64940 3.42401 3.43698 3.44573 3.51022 3.65989 3.72470 3.76057 3.79433 3.85380 3.87297 3.91205 3.93273 4.25242 4.27058 4.27432 4.30092 4.36137 4.47739 4.55580 4.59343 4.62723 4.64403 4.68996 4.70561 4.74978 4.79768 4.87156 4.99632 5.01075 5.08671 5.10262 5.19119 5.23394 5.29260 5.41408 5.48063 5.56285 5.68707 6.27081 6.46813 6.50213 6.72112 7.11359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.099 4.099 7 H 0.083 0.917 8 C -0.148 4.148 9 C 0.115 3.885 10 H 0.086 0.914 11 N -0.694 5.694 12 C 0.514 3.486 13 O -0.574 6.574 14 C 0.064 3.936 15 C -0.172 4.172 16 O -0.314 6.314 17 C 0.120 3.880 18 C -0.161 4.161 19 C -0.077 4.077 20 C -0.159 4.159 21 C -0.071 4.071 22 O -0.548 6.548 23 Si 0.754 3.246 24 C -0.055 4.055 25 C -0.207 4.207 26 C -0.114 4.114 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.422 0.578 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.133 0.867 40 H 0.147 0.853 41 H 0.128 0.872 42 H 0.385 0.615 43 H -0.286 1.286 44 H -0.303 1.303 45 H 0.141 0.859 46 H 0.156 0.844 47 H 0.126 0.874 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -8.742 -2.000 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.118 4.118 7 H 0.102 0.898 8 C -0.186 4.186 9 C 0.010 3.990 10 H 0.105 0.895 11 N -0.347 5.347 12 C 0.300 3.700 13 O -0.452 6.452 14 C 0.005 3.995 15 C -0.230 4.230 16 O -0.228 6.228 17 C 0.074 3.926 18 C -0.180 4.180 19 C -0.094 4.094 20 C -0.159 4.159 21 C -0.180 4.180 22 O -0.356 6.356 23 Si 0.660 3.340 24 C -0.073 4.073 25 C -0.225 4.225 26 C -0.152 4.152 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.261 0.739 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.145 0.855 42 H 0.235 0.765 43 H -0.213 1.213 44 H -0.231 1.231 45 H 0.159 0.841 46 H 0.173 0.827 47 H 0.144 0.856 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.156 -7.229 -1.950 8.126 hybrid contribution -0.912 -0.538 1.068 1.504 sum 2.244 -7.768 -0.882 8.133 Atomic orbital electron populations 1.23465 0.75434 1.05441 1.02165 1.86510 1.24488 1.33518 1.83820 1.24665 0.93788 0.80765 0.71001 1.90693 1.68430 1.37597 1.46851 1.21545 0.84753 0.98343 1.08539 1.22141 0.97297 0.94499 0.97836 0.89840 1.23620 0.97094 1.00026 0.97891 1.22511 0.87172 0.99609 0.89711 0.89535 1.45685 1.38098 1.10655 1.40295 1.20631 0.83801 0.83717 0.81820 1.90756 1.53249 1.36092 1.65084 1.22443 0.99404 0.82608 0.95056 1.22378 1.03556 0.99618 0.97415 1.86193 1.30907 1.31596 1.74076 1.19281 0.84488 0.94342 0.94448 1.20581 0.98917 0.94265 1.04230 1.20962 0.91697 0.99539 0.97212 1.20274 0.96560 0.94898 1.04187 1.25038 0.96492 1.07310 0.89210 1.86559 1.54202 1.67863 1.26942 0.94164 0.76263 0.75879 0.87674 1.20998 0.96396 0.95748 0.94194 1.21530 0.93972 1.00410 1.06590 1.23358 0.94504 0.97789 0.99542 0.92404 0.92335 0.85381 0.84662 0.84592 0.93774 0.87610 0.73878 0.85360 0.86856 0.89703 0.92417 0.84941 0.83601 0.85473 0.76540 1.21322 1.23082 0.84088 0.82654 0.85613 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.45 10.57 -51.39 -0.54 -1.00 16 3 C 0.45 0.88 7.96 71.24 0.57 1.45 16 4 O -0.55 -5.47 15.54 21.95 0.34 -5.13 16 5 C -0.09 0.71 5.64 29.85 0.17 0.87 16 6 C -0.10 0.44 3.11 -10.27 -0.03 0.41 16 7 H 0.08 0.05 7.73 -2.39 -0.02 0.04 16 8 C -0.15 0.25 7.45 31.18 0.23 0.48 16 9 C 0.11 -0.25 4.24 45.57 0.19 -0.06 16 10 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 11 N -0.69 3.27 5.25 -439.77 -2.31 0.96 16 12 C 0.51 1.93 7.23 87.66 0.63 2.57 16 13 O -0.57 -9.14 16.10 15.99 0.26 -8.88 16 14 C 0.06 -0.08 2.64 29.85 0.08 0.00 16 15 C -0.17 1.10 9.07 71.98 0.65 1.75 16 16 O -0.31 -2.18 9.33 -73.37 -0.68 -2.86 16 17 C 0.12 0.47 6.60 22.51 0.15 0.62 16 18 C -0.16 -0.62 9.99 22.37 0.22 -0.40 16 19 C -0.08 -0.04 8.66 22.25 0.19 0.15 16 20 C -0.16 0.03 5.39 -19.85 -0.11 -0.08 16 21 C -0.07 0.08 2.82 71.24 0.20 0.28 16 22 O -0.55 -0.89 12.77 -148.98 -1.90 -2.79 16 23 Si 0.75 -0.99 29.78 68.60 2.04 1.05 16 24 C -0.06 0.05 9.60 22.25 0.21 0.26 16 25 C -0.21 0.23 8.24 22.36 0.18 0.41 16 26 C -0.11 1.07 7.39 31.12 0.23 1.30 16 27 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 29 H 0.13 -0.90 8.14 -2.38 -0.02 -0.92 16 30 H 0.14 -1.70 7.87 -2.39 -0.02 -1.72 16 31 H 0.14 -1.64 8.14 -2.39 -0.02 -1.66 16 32 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.11 -0.63 7.92 -2.38 -0.02 -0.65 16 34 H 0.42 -5.66 8.15 -92.70 -0.76 -6.41 16 35 H 0.13 -0.94 6.32 -2.38 -0.02 -0.96 16 36 H 0.11 -1.54 7.56 -2.39 -0.02 -1.55 16 37 H 0.08 -0.60 6.90 -2.39 -0.02 -0.62 16 38 H 0.06 -0.10 8.14 -2.38 -0.02 -0.12 16 39 H 0.13 0.49 8.06 -2.91 -0.02 0.47 16 40 H 0.15 -0.46 4.87 -2.91 -0.01 -0.47 16 41 H 0.13 -0.40 7.96 -2.39 -0.02 -0.42 16 42 H 0.39 -1.33 8.70 -74.06 -0.64 -1.98 16 43 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 44 H -0.30 -1.92 7.11 99.48 0.71 -1.21 16 45 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 46 H 0.16 -1.10 5.43 -2.91 -0.02 -1.11 16 47 H 0.13 -1.97 8.08 -2.39 -0.02 -1.99 16 48 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 Total: 0.00 -31.48 398.19 1.82 -29.66 By element: Atomic # 1 Polarization: -21.84 SS G_CDS: -0.36 Total: -22.20 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 4.98 Total: 11.19 kcal Atomic # 7 Polarization: 3.27 SS G_CDS: -2.31 Total: 0.96 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -2.53 Total: -20.66 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 2.04 Total: 1.05 kcal Total: -31.48 1.82 -29.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_10157680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.361 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds