Wall clock time and date at job start Sun Mar 7 2021 14:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99651 * 2 1 4 4 O 1.20833 * 120.00145 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00353 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47507 * 179.97438 * 5 3 2 7 7 H 1.09001 * 112.84617 * 43.80542 * 6 5 3 8 8 C 1.53785 * 113.61444 * 174.99674 * 6 5 3 9 9 C 1.53781 * 87.08002 * 139.98327 * 8 6 5 10 10 H 1.08998 * 113.61411 * 89.20365 * 9 8 6 11 11 N 1.46494 * 113.61340 * 220.01853 * 9 8 6 12 12 C 1.34779 * 120.00032 * 205.27318 * 11 9 8 13 13 O 1.21697 * 120.00125 * 354.85215 * 12 11 9 14 14 C 1.46678 * 119.99896 * 174.84635 * 12 11 9 15 15 C 1.37868 * 126.23513 * 4.99973 * 14 12 11 16 16 C 1.39840 * 107.08484 * 179.84645 * 15 14 12 17 17 C 1.35449 * 107.86256 * 0.41264 * 16 15 14 18 18 C 1.50703 * 125.56066 * 179.77620 * 17 16 15 19 19 O 1.42905 * 109.46945 * 209.96120 * 18 17 16 20 20 Si 1.86306 * 109.47359 * 329.95982 * 18 17 16 21 21 N 1.35524 * 108.87441 * 359.74647 * 17 16 15 22 22 C 1.46505 * 125.68130 * 180.02562 * 21 17 16 23 23 C 1.53776 * 113.61466 * 272.49544 * 6 5 3 24 24 H 1.08997 * 109.47093 * 60.01009 * 1 2 3 25 25 H 1.09013 * 109.46662 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47555 * 300.00090 * 1 2 3 27 27 H 1.09009 * 109.47122 * 59.99105 * 5 3 2 28 28 H 1.09003 * 109.46780 * 299.99831 * 5 3 2 29 29 H 1.09001 * 113.61215 * 25.43197 * 8 6 5 30 30 H 1.08999 * 113.61403 * 254.52962 * 8 6 5 31 31 H 0.97001 * 120.00550 * 25.00548 * 11 9 8 32 32 H 1.08004 * 126.45722 * 359.95911 * 15 14 12 33 33 H 1.08003 * 126.06317 * 180.13429 * 16 15 14 34 34 H 1.09002 * 109.47223 * 89.95897 * 18 17 16 35 35 H 0.96695 * 113.99958 * 60.00512 * 19 18 17 36 36 H 1.48502 * 109.99763 * 58.68243 * 20 18 17 37 37 H 1.48496 * 109.99782 * 180.02562 * 20 18 17 38 38 H 1.08995 * 109.47132 * 274.86569 * 22 21 17 39 39 H 1.09001 * 109.47036 * 34.86041 * 22 21 17 40 40 H 1.09001 * 109.47437 * 154.85830 * 22 21 17 41 41 H 1.09006 * 113.61473 * 105.47692 * 23 6 5 42 42 H 1.08993 * 113.62012 * 334.56482 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2751 0.0006 6 6 3.9999 2.7422 -0.0002 7 1 3.4244 3.3540 0.6945 8 6 5.5206 2.9352 0.1232 9 6 5.3816 4.0668 -0.9087 10 1 5.1852 5.0421 -0.4634 11 7 6.4654 4.0991 -1.8938 12 6 6.7795 5.2546 -2.5125 13 8 6.1040 6.2491 -2.3237 14 6 7.9356 5.3134 -3.4132 15 6 8.7271 4.2507 -3.7939 16 6 9.7046 4.7550 -4.6574 17 6 9.5034 6.0889 -4.7790 18 6 10.3352 7.0282 -5.6138 19 8 10.3293 8.3271 -5.0181 20 14 12.0848 6.3946 -5.7046 21 7 8.4316 6.4408 -4.0279 22 6 7.8904 7.7956 -3.8932 23 6 4.1163 3.3494 -1.4082 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9564 0.7806 -0.8891 28 1 3.9556 0.7812 0.8909 29 1 6.0993 2.0845 -0.2369 30 1 5.8387 3.2786 1.1076 31 1 6.9596 3.2898 -2.0980 32 1 8.6125 3.2221 -3.4849 33 1 10.4846 4.1830 -5.1380 34 1 9.9177 7.0875 -6.6190 35 1 10.6879 8.3497 -4.1204 36 1 12.1014 5.0313 -6.2932 37 1 12.9154 7.3125 -6.5247 38 1 8.4338 8.3279 -3.1126 39 1 8.0002 8.3264 -4.8389 40 1 6.8346 7.7404 -3.6280 41 1 3.3008 4.0274 -1.6601 42 1 4.3111 2.6122 -2.1870 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17321982_10803936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:24:08 Heat of formation + Delta-G solvation = -76.699591 kcal Electronic energy + Delta-G solvation = -25160.106818 eV Core-core repulsion = 21301.798148 eV Total energy + Delta-G solvation = -3858.308670 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.57322 -41.62869 -40.71140 -39.17703 -37.77805 -37.37870 -35.02303 -33.65716 -31.96800 -31.01346 -28.48958 -27.45080 -26.95285 -26.80392 -24.54158 -23.00788 -21.86884 -21.35997 -20.88751 -20.19625 -18.85128 -18.51804 -18.08796 -17.81392 -17.51235 -17.04587 -16.89088 -16.30913 -16.07091 -15.93021 -15.37512 -15.31044 -14.82550 -14.77300 -14.51912 -14.44561 -14.34623 -13.88294 -13.71802 -13.62782 -13.43736 -13.23134 -12.99850 -12.94099 -12.85288 -12.25167 -12.16737 -12.01173 -11.92555 -11.75750 -11.46218 -11.34922 -10.97723 -10.69368 -10.08215 -9.73350 -9.07645 -5.05022 0.43253 1.10266 1.24458 1.51139 1.67565 1.69302 1.75748 1.97678 2.40032 2.40805 3.20721 3.33587 3.37776 3.54262 3.63786 3.72476 3.78886 3.85829 4.00833 4.17303 4.19997 4.24249 4.29790 4.30920 4.36086 4.41656 4.43526 4.51752 4.57356 4.60384 4.69195 4.73675 4.82930 4.94237 4.99633 5.04163 5.13592 5.23762 5.43193 5.51305 5.72283 5.99557 6.15339 6.35637 6.49294 6.77543 7.20539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.102 4.102 6 C -0.099 4.099 7 H 0.108 0.892 8 C -0.139 4.139 9 C 0.127 3.873 10 H 0.118 0.882 11 N -0.709 5.709 12 C 0.592 3.408 13 O -0.545 6.545 14 C -0.052 4.052 15 C -0.135 4.135 16 C -0.205 4.205 17 C 0.015 3.985 18 C -0.050 4.050 19 O -0.543 6.543 20 Si 0.723 3.277 21 N -0.390 5.390 22 C 0.063 3.937 23 C -0.147 4.147 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.404 0.596 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.119 0.881 35 H 0.380 0.620 36 H -0.252 1.252 37 H -0.253 1.253 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -4.711 2.309 6.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.390 6.390 5 C -0.140 4.140 6 C -0.118 4.118 7 H 0.126 0.874 8 C -0.177 4.177 9 C 0.023 3.977 10 H 0.136 0.864 11 N -0.359 5.359 12 C 0.380 3.620 13 O -0.424 6.424 14 C -0.167 4.167 15 C -0.161 4.161 16 C -0.229 4.229 17 C -0.103 4.103 18 C -0.161 4.161 19 O -0.348 6.348 20 Si 0.623 3.377 21 N -0.062 5.062 22 C -0.078 4.078 23 C -0.186 4.186 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.239 0.761 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.136 0.864 35 H 0.228 0.772 36 H -0.176 1.176 37 H -0.178 1.178 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.156 -3.429 1.416 4.871 hybrid contribution -0.759 -0.412 -0.364 0.937 sum 2.398 -3.841 1.052 4.648 Atomic orbital electron populations 1.23300 0.75961 1.03919 1.02701 1.86505 1.23776 1.33554 1.84093 1.23829 0.92320 0.81385 0.72391 1.90699 1.67238 1.36311 1.44794 1.21409 0.87584 0.98884 1.06112 1.22251 0.96170 0.94177 0.99225 0.87408 1.23440 0.95708 0.98517 1.00046 1.22498 0.86286 0.99942 0.89013 0.86410 1.45608 1.36842 1.10981 1.42506 1.17025 0.82479 0.83419 0.79079 1.90793 1.52633 1.35055 1.63905 1.20042 1.01831 0.87407 1.07375 1.21273 0.96384 0.97558 1.00894 1.20642 1.03856 0.92775 1.05648 1.21124 0.92708 0.95816 1.00659 1.24980 1.09315 0.84680 0.97080 1.86499 1.86717 1.27080 1.34532 0.94019 0.75121 0.79292 0.89308 1.43762 1.21341 1.07715 1.33426 1.22416 1.01986 0.79388 1.03960 1.23570 0.98374 1.00204 0.96411 0.91790 0.87926 0.91768 0.87402 0.87153 0.88976 0.89940 0.76096 0.83653 0.83558 0.86395 0.77230 1.17641 1.17787 0.90513 0.89087 0.87814 0.90375 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.41 10.57 -39.25 -0.41 -0.82 16 3 C 0.46 0.59 7.96 36.01 0.29 0.87 16 4 O -0.50 -2.23 15.51 -18.76 -0.29 -2.52 16 5 C -0.10 0.24 5.65 -27.89 -0.16 0.08 16 6 C -0.10 0.17 3.15 -89.81 -0.28 -0.11 16 7 H 0.11 -0.03 7.68 -51.93 -0.40 -0.42 16 8 C -0.14 0.44 7.39 -25.92 -0.19 0.25 16 9 C 0.13 -0.09 4.21 -67.12 -0.28 -0.37 16 10 H 0.12 0.14 7.52 -51.93 -0.39 -0.25 16 11 N -0.71 0.41 5.34 -54.32 -0.29 0.12 16 12 C 0.59 1.60 7.77 -12.85 -0.10 1.50 16 13 O -0.55 -3.23 14.19 5.19 0.07 -3.16 16 14 C -0.05 -0.11 6.89 -81.98 -0.56 -0.67 16 15 C -0.13 -0.03 10.35 -39.12 -0.41 -0.43 16 16 C -0.21 -0.08 9.37 -39.98 -0.37 -0.45 16 17 C 0.02 0.01 6.14 -81.96 -0.50 -0.49 16 18 C -0.05 0.03 2.90 36.01 0.10 0.14 16 19 O -0.54 0.38 10.50 -35.23 -0.37 0.01 16 20 Si 0.72 -1.37 31.29 -169.99 -5.32 -6.69 16 21 N -0.39 -0.77 3.16 -115.62 -0.37 -1.13 16 22 C 0.06 0.08 9.38 59.85 0.56 0.64 16 23 C -0.15 0.08 7.43 -25.92 -0.19 -0.12 16 24 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 25 H 0.10 -0.30 8.14 -51.92 -0.42 -0.72 16 26 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 27 H 0.11 -0.42 7.84 -51.92 -0.41 -0.83 16 28 H 0.11 -0.45 8.14 -51.93 -0.42 -0.88 16 29 H 0.09 -0.44 8.08 -51.93 -0.42 -0.86 16 30 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 31 H 0.40 -1.30 7.63 -40.82 -0.31 -1.61 16 32 H 0.15 -0.40 7.45 -52.48 -0.39 -0.79 16 33 H 0.15 -0.14 6.62 -52.48 -0.35 -0.49 16 34 H 0.12 -0.03 7.96 -51.93 -0.41 -0.44 16 35 H 0.38 -1.51 8.70 45.56 0.40 -1.12 16 36 H -0.25 -0.01 6.76 56.52 0.38 0.37 16 37 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 38 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 39 H 0.09 0.08 7.12 -51.93 -0.37 -0.29 16 40 H 0.10 0.31 5.96 -51.93 -0.31 0.00 16 41 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 -0.12 7.89 -51.93 -0.41 -0.53 16 LS Contribution 351.01 15.07 5.29 5.29 Total: 0.00 -9.42 351.01 -8.67 -18.09 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: -5.95 Total: -11.06 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.04 Total: 1.88 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -0.66 Total: -1.02 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -1.00 Total: -6.49 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -5.32 Total: -6.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -9.42 -8.67 -18.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_10803936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.610 kcal (2) G-P(sol) polarization free energy of solvation -9.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds