Wall clock time and date at job start Sun Mar 7 2021 14:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99855 * 2 1 4 4 O 1.20822 * 120.00244 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99853 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47214 * 179.97438 * 5 3 2 7 7 H 1.09004 * 112.84895 * 43.80291 * 6 5 3 8 8 C 1.53777 * 113.61494 * 174.99684 * 6 5 3 9 9 C 1.53783 * 87.08190 * 140.06619 * 8 6 5 10 10 H 1.08999 * 113.61579 * 89.19760 * 9 8 6 11 11 N 1.46497 * 113.61722 * 220.01944 * 9 8 6 12 12 C 1.34777 * 120.00260 * 205.00102 * 11 9 8 13 13 O 1.21686 * 119.99896 * 359.97438 * 12 11 9 14 14 C 1.46676 * 119.99997 * 180.02562 * 12 11 9 15 15 C 1.37869 * 126.23196 * 179.97438 * 14 12 11 16 16 C 1.50700 * 126.45881 * 0.04154 * 15 14 12 17 17 C 1.39844 * 107.08711 * 179.80007 * 15 14 12 18 18 C 1.50694 * 126.07106 * 180.27502 * 17 15 14 19 19 O 1.42903 * 109.46961 * 330.15056 * 18 17 15 20 20 Si 1.86303 * 109.46937 * 210.15732 * 18 17 15 21 21 C 1.35454 * 107.85914 * 0.38595 * 17 15 14 22 22 C 1.50703 * 125.56194 * 179.87735 * 21 17 15 23 23 N 1.35536 * 108.87596 * 359.61080 * 21 17 15 24 24 C 1.53777 * 113.69038 * 272.53636 * 6 5 3 25 25 H 1.09003 * 109.47168 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47311 * 300.00538 * 1 2 3 27 27 H 1.08998 * 109.46885 * 60.00994 * 1 2 3 28 28 H 1.08998 * 109.47207 * 59.99190 * 5 3 2 29 29 H 1.08999 * 109.46972 * 299.99513 * 5 3 2 30 30 H 1.09003 * 113.61676 * 25.51874 * 8 6 5 31 31 H 1.09001 * 113.61672 * 254.61370 * 8 6 5 32 32 H 0.97008 * 119.99819 * 24.99951 * 11 9 8 33 33 H 1.09002 * 109.47060 * 89.97114 * 16 15 14 34 34 H 1.09002 * 109.46920 * 209.97575 * 16 15 14 35 35 H 1.09000 * 109.46746 * 329.96853 * 16 15 14 36 36 H 1.08994 * 109.47420 * 90.15762 * 18 17 15 37 37 H 0.96696 * 114.00118 * 300.00488 * 19 18 17 38 38 H 1.48492 * 110.00210 * 58.68098 * 20 18 17 39 39 H 1.48507 * 109.99735 * 179.97438 * 20 18 17 40 40 H 1.09002 * 109.47152 * 269.71462 * 22 21 17 41 41 H 1.09001 * 109.46980 * 149.71563 * 22 21 17 42 42 H 1.09004 * 109.47113 * 29.71544 * 22 21 17 43 43 H 0.97002 * 125.68092 * 180.27765 * 23 21 17 44 44 H 1.09006 * 113.61907 * 105.45916 * 24 6 5 45 45 H 1.08997 * 113.61298 * 334.55076 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 1 3.4247 3.3539 0.6945 8 6 5.5208 2.9348 0.1232 9 6 5.3816 4.0680 -0.9071 10 1 5.1851 5.0426 -0.4604 11 7 6.4652 4.1018 -1.8924 12 6 6.7755 5.2570 -2.5135 13 8 6.1553 6.2718 -2.2562 14 6 7.8601 5.2907 -3.5003 15 6 8.2833 6.3951 -4.2087 16 6 7.7201 7.7897 -4.1136 17 6 9.3372 5.9787 -5.0282 18 6 10.1186 6.8481 -5.9792 19 8 9.2810 7.9020 -6.4587 20 14 10.7087 5.8210 -7.4171 21 6 9.5293 4.6546 -4.8171 22 6 10.5666 3.7998 -5.4987 23 7 8.6404 4.2251 -3.8885 24 6 4.1162 3.3513 -1.4073 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 3.9565 0.7804 -0.8890 29 1 3.9557 0.7810 0.8909 30 1 6.0995 2.0848 -0.2382 31 1 5.8391 3.2768 1.1080 32 1 6.9594 3.2927 -2.0977 33 1 8.2562 8.3464 -3.3449 34 1 7.8340 8.2938 -5.0734 35 1 6.6628 7.7376 -3.8538 36 1 10.9772 7.2739 -5.4602 37 1 8.4954 7.5956 -6.9320 38 1 9.5491 5.2091 -8.1141 39 1 11.4803 6.6671 -8.3628 40 1 10.1448 3.3731 -6.4088 41 1 10.8727 2.9964 -4.8287 42 1 11.4325 4.4117 -5.7517 43 1 8.5666 3.3180 -3.5529 44 1 3.3006 4.0295 -1.6582 45 1 4.3109 2.6151 -2.1872 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_12297754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:24:13 Heat of formation + Delta-G solvation = -92.293871 kcal Electronic energy + Delta-G solvation = -27244.198152 eV Core-core repulsion = 23229.675645 eV Total energy + Delta-G solvation = -4014.522507 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.67377 -41.69729 -40.79103 -39.28786 -37.91619 -37.51966 -35.05032 -33.65075 -33.03733 -31.54158 -29.30033 -28.53569 -27.48006 -26.72983 -26.41230 -24.42358 -22.55524 -21.75091 -21.01409 -20.62722 -20.22339 -19.24530 -18.58430 -17.94541 -17.60561 -17.54658 -17.00646 -16.73644 -16.55131 -16.16517 -15.95061 -15.71377 -15.13741 -14.79252 -14.77882 -14.52043 -14.33296 -14.05077 -13.93634 -13.85026 -13.71376 -13.51388 -13.40020 -13.25974 -13.11411 -12.94901 -12.82996 -12.56343 -12.32322 -12.16717 -11.90097 -11.83632 -11.81632 -11.50646 -11.36636 -11.13817 -10.52058 -10.19303 -9.54073 -8.96036 -4.76340 0.35439 1.16395 1.23831 1.67848 1.70973 1.74432 1.97541 2.08144 2.17490 2.24922 3.39789 3.42285 3.45834 3.71728 3.77509 3.85085 3.85272 3.88626 3.98679 4.20591 4.24387 4.25913 4.29566 4.45294 4.52845 4.60759 4.66885 4.67344 4.67966 4.70343 4.76253 4.81468 4.82020 4.83188 4.90453 4.97150 5.06424 5.12748 5.19321 5.26300 5.33573 5.39448 5.53606 5.71102 5.83454 6.40714 6.52360 6.61067 6.69965 7.10881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.453 3.547 4 O -0.545 6.545 5 C -0.095 4.095 6 C -0.097 4.097 7 H 0.085 0.915 8 C -0.115 4.115 9 C 0.116 3.884 10 H 0.089 0.911 11 N -0.703 5.703 12 C 0.586 3.414 13 O -0.572 6.572 14 C -0.082 4.082 15 C -0.073 4.073 16 C -0.093 4.093 17 C -0.233 4.233 18 C -0.053 4.053 19 O -0.550 6.550 20 Si 0.763 3.237 21 C 0.088 3.912 22 C -0.110 4.110 23 N -0.515 5.515 24 C -0.147 4.147 25 H 0.128 0.872 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.413 0.587 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.113 0.887 37 H 0.381 0.619 38 H -0.292 1.292 39 H -0.306 1.306 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.435 0.565 44 H 0.044 0.956 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.153 -12.934 0.566 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.435 6.435 5 C -0.132 4.132 6 C -0.116 4.116 7 H 0.103 0.897 8 C -0.153 4.153 9 C 0.011 3.989 10 H 0.107 0.893 11 N -0.354 5.354 12 C 0.375 3.625 13 O -0.452 6.452 14 C -0.194 4.194 15 C -0.082 4.082 16 C -0.150 4.150 17 C -0.239 4.239 18 C -0.162 4.162 19 O -0.357 6.357 20 Si 0.668 3.332 21 C -0.032 4.032 22 C -0.165 4.165 23 N -0.114 5.114 24 C -0.186 4.186 25 H 0.147 0.853 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.142 0.858 31 H 0.105 0.895 32 H 0.250 0.750 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.229 0.771 38 H -0.218 1.218 39 H -0.235 1.235 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.276 0.724 44 H 0.063 0.937 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.833 -11.861 0.314 13.221 hybrid contribution -1.931 0.727 0.008 2.064 sum 3.902 -11.134 0.322 11.802 Atomic orbital electron populations 1.23469 0.75404 1.05464 1.02171 1.86508 1.24507 1.33461 1.83812 1.24636 0.93752 0.80793 0.71017 1.90692 1.68415 1.37597 1.46836 1.21535 0.84843 0.98279 1.08498 1.22133 0.97188 0.94618 0.97673 0.89702 1.23362 0.94618 0.97888 0.99423 1.22477 0.86585 0.99759 0.90051 0.89279 1.45666 1.36832 1.10733 1.42191 1.17299 0.81605 0.83717 0.79867 1.90820 1.53823 1.35194 1.65356 1.19894 1.02173 0.89633 1.07662 1.19933 0.97062 0.94698 0.96465 1.20412 0.99869 0.92110 1.02656 1.19648 1.03273 0.94673 1.06343 1.24671 0.95053 0.93266 1.03176 1.86513 1.39503 1.34142 1.75559 0.94465 0.82380 0.81525 0.74818 1.20708 0.94913 0.93665 0.93955 1.20720 0.95271 0.99442 1.01078 1.41659 1.26550 1.10544 1.32601 1.23587 0.97247 1.00038 0.97750 0.85341 0.92305 0.92432 0.84800 0.84505 0.85844 0.89482 0.75030 0.92857 0.89782 0.92740 0.86903 0.77058 1.21838 1.23460 0.87998 0.86226 0.86528 0.72378 0.93683 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.54 10.57 -51.36 -0.54 -1.08 16 3 C 0.45 1.06 7.96 71.24 0.57 1.63 16 4 O -0.55 -5.69 15.51 21.98 0.34 -5.35 16 5 C -0.09 0.65 5.65 29.85 0.17 0.82 16 6 C -0.10 0.36 3.15 -10.27 -0.03 0.33 16 7 H 0.08 0.11 7.68 -2.38 -0.02 0.10 16 8 C -0.12 0.95 7.39 31.12 0.23 1.18 16 9 C 0.12 -0.08 4.24 45.52 0.19 0.11 16 10 H 0.09 0.53 7.46 -2.39 -0.02 0.51 16 11 N -0.70 1.47 5.35 -444.00 -2.38 -0.91 16 12 C 0.59 4.10 7.79 86.45 0.67 4.77 16 13 O -0.57 -9.54 14.40 -4.30 -0.06 -9.60 16 14 C -0.08 -0.34 7.06 40.35 0.28 -0.06 16 15 C -0.07 -0.57 6.15 -19.56 -0.12 -0.69 16 16 C -0.09 -1.03 9.51 71.24 0.68 -0.35 16 17 C -0.23 -0.49 5.38 -20.12 -0.11 -0.60 16 18 C -0.05 -0.08 3.03 71.23 0.22 0.14 16 19 O -0.55 -3.21 10.20 -148.98 -1.52 -4.73 16 20 Si 0.76 -1.89 26.77 68.60 1.84 -0.06 16 21 C 0.09 -0.43 6.84 41.34 0.28 -0.14 16 22 C -0.11 1.54 8.22 71.24 0.59 2.12 16 23 N -0.51 2.79 5.99 -171.93 -1.03 1.76 16 24 C -0.15 0.08 7.43 31.12 0.23 0.32 16 25 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 26 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 27 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.13 -1.59 7.85 -2.39 -0.02 -1.61 16 29 H 0.14 -1.60 8.14 -2.39 -0.02 -1.62 16 30 H 0.12 -1.80 8.08 -2.39 -0.02 -1.82 16 31 H 0.09 -0.71 8.14 -2.39 -0.02 -0.72 16 32 H 0.41 -4.32 7.86 -92.70 -0.73 -5.05 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.78 5.47 -2.39 -0.01 0.76 16 35 H 0.05 0.80 6.48 -2.39 -0.02 0.79 16 36 H 0.11 0.05 7.96 -2.39 -0.02 0.04 16 37 H 0.38 0.59 8.47 -74.06 -0.63 -0.03 16 38 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 39 H -0.31 -1.81 7.11 99.48 0.71 -1.10 16 40 H 0.10 -1.56 7.15 -2.39 -0.02 -1.58 16 41 H 0.12 -2.30 8.14 -2.39 -0.02 -2.32 16 42 H 0.12 -1.89 5.15 -2.38 -0.01 -1.91 16 43 H 0.43 -6.02 8.19 -92.71 -0.76 -6.78 16 44 H 0.04 0.29 8.14 -2.38 -0.02 0.27 16 45 H 0.10 -0.45 7.90 -2.39 -0.02 -0.47 16 Total: 0.00 -32.78 364.17 0.67 -32.11 By element: Atomic # 1 Polarization: -21.87 SS G_CDS: -1.03 Total: -22.89 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.05 Total: 10.75 kcal Atomic # 7 Polarization: 4.26 SS G_CDS: -3.41 Total: 0.86 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.78 Total: -20.76 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 1.84 Total: -0.06 kcal Total: -32.78 0.67 -32.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_12297754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.179 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds