Wall clock time and date at job start Sun Mar 7 2021 14:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00334 * 2 1 4 4 O 1.20826 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00502 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47714 * 179.97438 * 5 3 2 7 7 H 1.09000 * 112.84839 * 316.20342 * 6 5 3 8 8 C 1.53783 * 113.68944 * 87.46318 * 6 5 3 9 9 C 1.53779 * 87.08135 * 139.99721 * 8 6 5 10 10 H 1.08992 * 113.68958 * 89.13004 * 9 8 6 11 11 N 1.46503 * 113.61132 * 220.01934 * 9 8 6 12 12 C 1.34771 * 120.00033 * 252.49691 * 11 9 8 13 13 O 1.21620 * 119.99909 * 359.97438 * 12 11 9 14 14 C 1.47303 * 120.00153 * 180.02562 * 12 11 9 15 15 C 1.39824 * 120.13375 * 0.22035 * 14 12 11 16 16 C 1.37586 * 119.96258 * 180.29442 * 15 14 12 17 17 C 1.50702 * 119.87892 * 179.72921 * 16 15 14 18 18 O 1.42892 * 109.47242 * 254.72956 * 17 16 15 19 19 Si 1.86298 * 109.46915 * 14.73495 * 17 16 15 20 20 C 1.39137 * 120.24038 * 359.45960 * 16 15 14 21 21 O 1.35708 * 119.86515 * 180.27094 * 20 16 15 22 22 C 1.42902 * 117.00284 * 180.02562 * 21 20 16 23 23 C 1.38728 * 120.27669 * 0.29714 * 20 16 15 24 24 C 1.38402 * 120.02981 * 359.97438 * 23 20 16 25 25 O 1.35655 * 120.12256 * 180.02562 * 24 23 20 26 26 C 1.42901 * 117.00079 * 359.97438 * 25 24 23 27 27 C 1.53778 * 87.08141 * 334.56795 * 9 8 6 28 28 H 1.09006 * 109.47387 * 60.00107 * 1 2 3 29 29 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47616 * 300.00383 * 1 2 3 31 31 H 1.09007 * 109.47196 * 59.99478 * 5 3 2 32 32 H 1.08997 * 109.47211 * 300.00187 * 5 3 2 33 33 H 1.09005 * 113.61471 * 25.44253 * 8 6 5 34 34 H 1.09004 * 113.61510 * 254.54676 * 8 6 5 35 35 H 0.97003 * 120.00026 * 72.50131 * 11 9 8 36 36 H 1.08004 * 120.01665 * 0.04985 * 15 14 12 37 37 H 1.09000 * 109.46724 * 134.73002 * 17 16 15 38 38 H 0.96703 * 114.00176 * 180.02562 * 18 17 16 39 39 H 1.48506 * 109.99834 * 178.68053 * 19 17 16 40 40 H 1.48502 * 110.00011 * 299.99318 * 19 17 16 41 41 H 1.09001 * 109.47031 * 299.99927 * 22 21 20 42 42 H 1.09000 * 109.47219 * 60.00031 * 22 21 20 43 43 H 1.08999 * 109.47048 * 180.02562 * 22 21 20 44 44 H 1.07997 * 119.98925 * 179.97438 * 23 20 16 45 45 H 1.09002 * 109.47401 * 180.02562 * 26 25 24 46 46 H 1.09004 * 109.47084 * 300.00212 * 26 25 24 47 47 H 1.08992 * 109.47133 * 59.99973 * 26 25 24 48 48 H 1.08999 * 113.61689 * 139.97876 * 27 9 8 49 49 H 1.09000 * 113.61373 * 270.80479 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7420 -0.0002 7 1 3.4252 3.3531 -0.6960 8 6 4.1150 3.3531 1.4063 9 6 5.3807 4.0692 0.9063 10 1 5.1847 5.0432 0.4582 11 7 6.4635 4.1042 1.8925 12 6 6.7732 5.2601 2.5124 13 8 6.1542 6.2742 2.2528 14 6 7.8623 5.2954 3.5036 15 6 8.5796 4.1324 3.8002 16 6 9.5921 4.1681 4.7310 17 6 10.3600 2.9121 5.0536 18 8 9.9465 2.4151 6.3279 19 14 10.0253 1.6269 3.7471 20 6 9.9134 5.3608 5.3715 21 8 10.9172 5.3885 6.2844 22 6 11.1950 6.6452 6.9053 23 6 9.2116 6.5217 5.0813 24 6 8.1872 6.4975 4.1509 25 8 7.5001 7.6317 3.8652 26 6 7.8863 8.8174 4.5630 27 6 5.5209 2.9347 -0.1224 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 4.3089 2.6179 2.1874 34 1 3.2991 4.0316 1.6556 35 1 6.9576 3.2954 2.0993 36 1 8.3364 3.2057 3.3016 37 1 11.4267 3.1350 5.0792 38 1 10.4008 1.6062 6.6009 39 1 10.8016 0.3944 4.0365 40 1 8.5742 1.3143 3.7022 41 1 11.4721 7.3736 6.1432 42 1 10.3080 6.9928 7.4348 43 1 12.0173 6.5278 7.6112 44 1 9.4646 7.4448 5.5815 45 1 7.2585 9.6487 4.2423 46 1 7.7651 8.6637 5.6354 47 1 8.9297 9.0442 4.3442 48 1 5.8400 3.2754 -1.1074 49 1 6.1005 2.0857 0.2401 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_12297780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:24:16 Heat of formation + Delta-G solvation = -163.371397 kcal Electronic energy + Delta-G solvation = -33496.553396 eV Core-core repulsion = 28778.784122 eV Total energy + Delta-G solvation = -4717.769274 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.165 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.11059 -41.64349 -40.82124 -40.06658 -39.20742 -38.37136 -37.48574 -37.13948 -34.80335 -32.38744 -32.10649 -31.10758 -28.98297 -28.47488 -28.10597 -26.65538 -26.08246 -25.30746 -23.94864 -22.70006 -21.74858 -21.51321 -20.50907 -19.96421 -18.69326 -18.52964 -18.50968 -18.16492 -17.75278 -17.55292 -17.28008 -17.08710 -16.70501 -16.53763 -16.36712 -16.12119 -15.79762 -15.76462 -15.46896 -15.36641 -14.82580 -14.50016 -14.36647 -14.16410 -13.91474 -13.84695 -13.65989 -13.49876 -13.40822 -13.32887 -12.91759 -12.78975 -12.75526 -12.54451 -12.51214 -12.15361 -12.08172 -11.86476 -11.84162 -11.79635 -11.62400 -11.44724 -11.29380 -10.89037 -10.38569 -10.05948 -9.90852 -9.18525 -4.88089 -0.25431 0.07911 1.19120 1.32812 1.63368 1.72380 1.77955 1.96636 2.11819 2.14716 2.20296 2.58480 3.34853 3.46537 3.50906 3.55275 3.68797 3.72144 3.81000 3.87709 3.89027 3.92818 4.10431 4.17265 4.23541 4.25968 4.27109 4.27520 4.28260 4.30170 4.32617 4.46980 4.50960 4.63293 4.65720 4.67087 4.68985 4.77064 4.77889 4.82482 4.90051 4.94332 5.05326 5.05707 5.14261 5.29342 5.31998 5.42774 5.63936 6.03036 6.28718 6.55940 6.66676 6.72679 7.26662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.544 6.544 5 C -0.096 4.096 6 C -0.096 4.096 7 H 0.088 0.912 8 C -0.151 4.151 9 C 0.117 3.883 10 H 0.092 0.908 11 N -0.707 5.707 12 C 0.563 3.437 13 O -0.567 6.567 14 C -0.228 4.228 15 C 0.002 3.998 16 C -0.162 4.162 17 C -0.078 4.078 18 O -0.557 6.557 19 Si 0.761 3.239 20 C 0.213 3.787 21 O -0.311 6.311 22 C 0.012 3.988 23 C -0.311 4.311 24 C 0.216 3.784 25 O -0.305 6.305 26 C 0.010 3.990 27 C -0.116 4.116 28 H 0.059 0.941 29 H 0.128 0.872 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.411 0.589 36 H 0.162 0.838 37 H 0.082 0.918 38 H 0.392 0.608 39 H -0.283 1.283 40 H -0.267 1.267 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.164 0.836 45 H 0.112 0.888 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 -4.387 -0.308 8.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.299 3.701 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.115 4.115 7 H 0.106 0.894 8 C -0.190 4.190 9 C 0.012 3.988 10 H 0.111 0.889 11 N -0.359 5.359 12 C 0.352 3.648 13 O -0.447 6.447 14 C -0.232 4.232 15 C -0.016 4.016 16 C -0.163 4.163 17 C -0.185 4.185 18 O -0.366 6.366 19 Si 0.663 3.337 20 C 0.165 3.835 21 O -0.223 6.223 22 C -0.082 4.082 23 C -0.330 4.330 24 C 0.167 3.833 25 O -0.215 6.215 26 C -0.084 4.084 27 C -0.154 4.154 28 H 0.078 0.922 29 H 0.146 0.854 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.249 0.751 36 H 0.179 0.821 37 H 0.100 0.900 38 H 0.242 0.758 39 H -0.210 1.210 40 H -0.193 1.193 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.182 0.818 45 H 0.131 0.869 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.111 0.889 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.884 -3.740 -0.743 7.011 hybrid contribution -0.158 0.205 1.812 1.830 sum 5.726 -3.535 1.069 6.813 Atomic orbital electron populations 1.23466 0.75434 1.05432 1.02179 1.86508 1.24499 1.33505 1.83838 1.24626 0.93719 0.80787 0.71008 1.90686 1.68386 1.37549 1.46821 1.21551 0.84876 0.98480 1.08423 1.22141 0.97351 0.94448 0.97562 0.89408 1.23610 0.97533 1.00096 0.97793 1.22470 0.86457 0.99833 0.90021 0.88940 1.45766 1.36915 1.10998 1.42258 1.18101 0.82590 0.83555 0.80550 1.90813 1.53781 1.34894 1.65172 1.19155 1.04324 0.93121 1.06627 1.20960 0.90368 0.96731 0.93584 1.18615 1.02242 0.93287 1.02198 1.24919 1.00296 0.99657 0.93658 1.86567 1.68066 1.46927 1.35078 0.94349 0.78878 0.75764 0.84711 1.18917 0.85657 0.92681 0.86221 1.86108 1.48255 1.36164 1.51768 1.23474 1.03009 0.83459 0.98287 1.21408 1.03188 1.00707 1.07715 1.18991 0.88146 0.86254 0.89939 1.86367 1.56114 1.16519 1.62549 1.23474 1.02756 0.84807 0.97380 1.23380 0.94459 0.97919 0.99667 0.92219 0.85381 0.92489 0.84338 0.85142 0.88441 0.93623 0.75056 0.82122 0.89986 0.75801 1.20999 1.19322 0.90874 0.91785 0.86051 0.81845 0.86938 0.91297 0.90695 0.88929 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.37 -1.07 10.56 -51.39 -0.54 -1.62 16 3 C 0.45 1.77 7.96 71.23 0.57 2.33 16 4 O -0.54 -6.36 15.51 21.97 0.34 -6.02 16 5 C -0.10 0.47 5.65 29.85 0.17 0.64 16 6 C -0.10 0.18 3.15 -10.27 -0.03 0.15 16 7 H 0.09 0.21 7.68 -2.39 -0.02 0.20 16 8 C -0.15 -0.32 7.43 31.12 0.23 -0.09 16 9 C 0.12 0.20 4.24 45.52 0.19 0.40 16 10 H 0.09 0.69 7.46 -2.39 -0.02 0.67 16 11 N -0.71 -1.31 5.30 -443.43 -2.35 -3.67 16 12 C 0.56 5.62 7.76 86.63 0.67 6.30 16 13 O -0.57 -10.73 14.75 16.87 0.25 -10.49 16 14 C -0.23 -1.65 5.89 -20.00 -0.12 -1.77 16 15 C 0.00 0.00 8.14 22.50 0.18 0.19 16 16 C -0.16 -0.48 5.31 -19.80 -0.11 -0.59 16 17 C -0.08 0.03 2.36 71.24 0.17 0.20 16 18 O -0.56 -1.41 12.86 -148.98 -1.92 -3.32 16 19 Si 0.76 -4.04 30.18 68.60 2.07 -1.97 16 20 C 0.21 0.86 6.67 22.60 0.15 1.01 16 21 O -0.31 -0.82 9.80 -90.29 -0.88 -1.70 16 22 C 0.01 -0.06 9.80 113.37 1.11 1.06 16 23 C -0.31 -1.03 8.01 22.43 0.18 -0.85 16 24 C 0.22 1.74 6.70 22.82 0.15 1.89 16 25 O -0.30 -3.11 8.56 -68.75 -0.59 -3.70 16 26 C 0.01 0.00 9.81 113.37 1.11 1.11 16 27 C -0.12 0.73 7.39 31.12 0.23 0.96 16 28 H 0.06 0.05 8.13 -2.38 -0.02 0.03 16 29 H 0.13 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 31 H 0.14 -1.40 8.14 -2.38 -0.02 -1.42 16 32 H 0.13 -1.19 7.85 -2.39 -0.02 -1.20 16 33 H 0.10 -0.07 7.90 -2.38 -0.02 -0.09 16 34 H 0.04 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.41 -2.03 6.74 -92.71 -0.63 -2.65 16 36 H 0.16 -0.68 3.20 -2.91 -0.01 -0.69 16 37 H 0.08 -0.17 7.82 -2.39 -0.02 -0.19 16 38 H 0.39 -2.16 8.74 -74.06 -0.65 -2.81 16 39 H -0.28 0.25 7.11 99.48 0.71 0.95 16 40 H -0.27 0.74 6.75 99.48 0.67 1.41 16 41 H 0.07 -0.54 7.65 -2.39 -0.02 -0.56 16 42 H 0.06 -0.36 7.65 -2.39 -0.02 -0.38 16 43 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H 0.16 -0.33 4.50 -2.91 -0.01 -0.34 16 45 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.07 -0.18 7.66 -2.38 -0.02 -0.20 16 47 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 48 H 0.09 -0.68 8.14 -2.39 -0.02 -0.69 16 49 H 0.12 -1.46 8.08 -2.39 -0.02 -1.48 16 Total: 0.00 -31.82 403.88 2.18 -29.64 By element: Atomic # 1 Polarization: -11.03 SS G_CDS: -0.26 Total: -11.29 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 6.06 Total: 14.14 kcal Atomic # 7 Polarization: -1.31 SS G_CDS: -2.35 Total: -3.67 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -3.34 Total: -26.85 kcal Atomic # 14 Polarization: -4.04 SS G_CDS: 2.07 Total: -1.97 kcal Total: -31.82 2.18 -29.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_12297780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.731 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds