Wall clock time and date at job start Sun Mar 7 2021 14:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99964 * 2 1 4 4 O 1.20830 * 120.00267 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99958 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47124 * 180.02562 * 5 3 2 7 7 H 1.09003 * 112.90715 * 316.25339 * 6 5 3 8 8 C 1.53780 * 113.61378 * 87.50034 * 6 5 3 9 9 C 1.53782 * 87.07973 * 139.98153 * 8 6 5 10 10 H 1.08998 * 113.69005 * 89.13056 * 9 8 6 11 11 N 1.46499 * 113.61315 * 220.01554 * 9 8 6 12 12 C 1.34777 * 120.00195 * 252.49517 * 11 9 8 13 13 O 1.21573 * 119.99941 * 0.02562 * 12 11 9 14 14 C 1.47689 * 119.99887 * 180.27913 * 12 11 9 15 15 C 1.39826 * 120.16655 * 179.73019 * 14 12 11 16 16 F 1.35097 * 120.10941 * 359.97438 * 15 14 12 17 17 C 1.38325 * 119.78064 * 180.02562 * 15 14 12 18 18 C 1.38197 * 120.11523 * 359.97438 * 17 15 14 19 19 C 1.38460 * 120.34267 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.89418 * 179.97438 * 19 18 17 21 21 O 1.42891 * 109.47232 * 245.00298 * 20 19 18 22 22 Si 1.86304 * 109.46767 * 5.00118 * 20 19 18 23 23 C 1.37860 * 120.21506 * 359.71625 * 19 18 17 24 24 C 1.53775 * 87.08323 * 334.56980 * 9 8 6 25 25 H 1.09002 * 109.47206 * 299.99501 * 1 2 3 26 26 H 1.09001 * 109.47448 * 60.00180 * 1 2 3 27 27 H 1.09001 * 109.47259 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47545 * 59.99971 * 5 3 2 29 29 H 1.09000 * 109.47274 * 299.99976 * 5 3 2 30 30 H 1.08993 * 113.61656 * 25.43476 * 8 6 5 31 31 H 1.09004 * 113.61428 * 254.52777 * 8 6 5 32 32 H 0.97000 * 120.00069 * 72.50245 * 11 9 8 33 33 H 1.07995 * 119.94206 * 180.02562 * 17 15 14 34 34 H 1.08000 * 119.83014 * 180.02562 * 18 17 15 35 35 H 1.08997 * 109.46648 * 124.99457 * 20 19 18 36 36 H 0.96706 * 114.00117 * 180.02562 * 21 20 19 37 37 H 1.48500 * 109.99885 * 178.67847 * 22 20 19 38 38 H 1.48498 * 110.00224 * 299.99961 * 22 20 19 39 39 H 1.08000 * 120.05996 * 180.27569 * 23 19 18 40 40 H 1.08990 * 113.61825 * 139.98413 * 24 9 8 41 41 H 1.09001 * 113.61037 * 270.88351 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.4245 3.3550 -0.6935 8 6 4.1164 3.3493 1.4082 9 6 5.3817 4.0665 0.9088 10 1 5.1854 5.0419 0.4635 11 7 6.4655 4.0988 1.8940 12 6 6.7760 5.2531 2.5167 13 8 6.1564 6.2674 2.2612 14 6 7.8726 5.2869 3.5054 15 6 8.2014 6.4837 4.1493 16 9 7.5172 7.6144 3.8690 17 6 9.2303 6.5064 5.0736 18 6 9.9307 5.3500 5.3601 19 6 9.6093 4.1622 4.7254 20 6 10.3800 2.9073 5.0450 21 8 11.0977 2.4807 3.8854 22 14 11.5811 3.2514 6.4270 23 6 8.5829 4.1226 3.8058 24 6 5.5208 2.9350 -0.1231 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7806 0.8891 30 1 4.3111 2.6120 2.1870 31 1 3.3009 4.0273 1.6601 32 1 6.9597 3.2895 2.0982 33 1 9.4862 7.4293 5.5728 34 1 10.7329 5.3729 6.0828 35 1 9.6873 2.1239 5.3524 36 1 11.6174 1.6760 4.0183 37 1 12.3250 2.0137 6.7734 38 1 12.5311 4.3180 6.0206 39 1 8.3314 3.1938 3.3155 40 1 5.8390 3.2783 -1.1074 41 1 6.0994 2.0843 0.2370 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_12335834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:24:20 Heat of formation + Delta-G solvation = -140.463926 kcal Electronic energy + Delta-G solvation = -26774.068048 eV Core-core repulsion = 22536.277763 eV Total energy + Delta-G solvation = -4237.790285 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.02416 -41.78533 -41.32792 -40.26990 -39.26735 -37.58409 -37.48912 -35.06694 -32.83024 -32.41278 -31.31872 -28.41914 -26.71415 -26.59372 -25.93327 -24.36824 -22.88659 -21.74636 -21.65967 -20.52905 -19.13545 -18.60067 -18.56336 -18.25572 -17.96700 -17.62925 -17.54059 -16.91081 -16.85087 -16.40808 -16.13613 -15.87367 -15.77600 -15.61745 -14.85407 -14.74851 -14.49408 -14.45810 -14.06024 -13.93594 -13.80643 -13.49610 -13.36957 -13.33314 -12.93747 -12.84339 -12.73593 -12.42381 -12.17170 -11.88228 -11.81701 -11.80302 -11.49020 -11.34972 -11.11321 -10.49170 -10.40843 -10.08540 -9.81353 -4.87501 -0.50457 -0.02663 1.18513 1.31725 1.58158 1.64642 1.75908 1.98797 2.01481 2.44772 3.04669 3.28310 3.39660 3.41636 3.47543 3.58924 3.74819 3.75100 3.81029 3.90238 4.03355 4.13347 4.25101 4.27453 4.28850 4.36776 4.47086 4.58488 4.63398 4.69103 4.72838 4.75457 4.77284 4.84904 4.85778 4.93611 4.99583 5.07997 5.16485 5.21671 5.40958 5.54381 5.59218 6.37824 6.63678 6.72129 7.06002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.454 3.546 4 O -0.545 6.545 5 C -0.095 4.095 6 C -0.097 4.097 7 H 0.085 0.915 8 C -0.146 4.146 9 C 0.112 3.888 10 H 0.088 0.912 11 N -0.695 5.695 12 C 0.553 3.447 13 O -0.576 6.576 14 C -0.189 4.189 15 C 0.131 3.869 16 F -0.137 7.137 17 C -0.153 4.153 18 C -0.055 4.055 19 C -0.095 4.095 20 C -0.076 4.076 21 O -0.555 6.555 22 Si 0.753 3.247 23 C -0.022 4.022 24 C -0.116 4.116 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.417 0.583 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.112 0.888 36 H 0.399 0.601 37 H -0.287 1.287 38 H -0.296 1.296 39 H 0.165 0.835 40 H 0.086 0.914 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -10.421 3.655 11.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.299 3.701 4 O -0.435 6.435 5 C -0.132 4.132 6 C -0.116 4.116 7 H 0.103 0.897 8 C -0.185 4.185 9 C 0.008 3.992 10 H 0.106 0.894 11 N -0.347 5.347 12 C 0.341 3.659 13 O -0.456 6.456 14 C -0.193 4.193 15 C 0.110 3.890 16 F -0.116 7.116 17 C -0.171 4.171 18 C -0.073 4.073 19 C -0.095 4.095 20 C -0.185 4.185 21 O -0.366 6.366 22 Si 0.659 3.341 23 C -0.041 4.041 24 C -0.154 4.154 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.257 0.743 33 H 0.184 0.816 34 H 0.180 0.820 35 H 0.129 0.871 36 H 0.250 0.750 37 H -0.214 1.214 38 H -0.224 1.224 39 H 0.182 0.818 40 H 0.104 0.896 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.210 -8.873 3.444 10.407 hybrid contribution -0.158 -0.195 -0.886 0.921 sum 4.051 -9.067 2.557 10.255 Atomic orbital electron populations 1.23468 0.75415 1.05446 1.02177 1.86507 1.24497 1.33443 1.83813 1.24618 0.93711 0.80795 0.71008 1.90693 1.68406 1.37589 1.46847 1.21534 0.84888 0.98211 1.08547 1.22131 0.97022 0.94694 0.97718 0.89679 1.23590 0.97004 1.00072 0.97812 1.22531 0.86766 0.99791 0.90158 0.89396 1.45713 1.36479 1.10954 1.41525 1.18385 0.82738 0.83825 0.80920 1.90841 1.54110 1.35142 1.65493 1.20074 1.01528 0.94909 1.02798 1.18225 0.92554 0.81631 0.96548 1.91554 1.78432 1.49272 1.92307 1.21345 0.95335 1.01819 0.98646 1.21368 0.97735 0.90602 0.97596 1.19497 0.96761 0.95000 0.98274 1.24847 1.01147 0.96599 0.95931 1.86538 1.66033 1.49415 1.34575 0.94227 0.79613 0.78246 0.81986 1.21227 0.92039 0.96595 0.94236 1.23370 0.94781 0.97914 0.99337 0.92376 0.92345 0.85364 0.84569 0.84675 0.87600 0.93518 0.74327 0.81594 0.82026 0.87066 0.75012 1.21428 1.22392 0.81777 0.89551 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.63 10.57 -51.39 -0.54 -1.17 16 3 C 0.45 1.22 7.96 71.24 0.57 1.78 16 4 O -0.55 -5.84 15.51 21.95 0.34 -5.50 16 5 C -0.09 0.60 5.65 29.85 0.17 0.77 16 6 C -0.10 0.28 3.15 -10.27 -0.03 0.25 16 7 H 0.08 0.17 7.68 -2.39 -0.02 0.16 16 8 C -0.15 -0.02 7.43 31.12 0.23 0.22 16 9 C 0.11 0.08 4.24 45.52 0.19 0.27 16 10 H 0.09 0.65 7.46 -2.39 -0.02 0.63 16 11 N -0.69 0.13 5.31 -443.06 -2.35 -2.22 16 12 C 0.55 4.74 7.77 86.74 0.67 5.41 16 13 O -0.58 -10.90 14.94 -3.95 -0.06 -10.96 16 14 C -0.19 -0.88 5.88 -20.05 -0.12 -0.99 16 15 C 0.13 0.93 7.29 22.67 0.17 1.09 16 16 F -0.14 -1.95 15.55 44.97 0.70 -1.25 16 17 C -0.15 -0.01 10.01 22.28 0.22 0.22 16 18 C -0.06 0.20 8.66 22.31 0.19 0.39 16 19 C -0.09 0.36 5.38 -19.90 -0.11 0.26 16 20 C -0.08 0.60 2.79 71.24 0.20 0.80 16 21 O -0.55 2.94 12.81 -148.98 -1.91 1.03 16 22 Si 0.75 -5.59 29.84 68.60 2.05 -3.54 16 23 C -0.02 0.06 9.17 22.52 0.21 0.27 16 24 C -0.12 0.79 7.39 31.12 0.23 1.02 16 25 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 26 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 27 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H 0.14 -1.49 8.14 -2.39 -0.02 -1.51 16 29 H 0.14 -1.54 7.84 -2.39 -0.02 -1.55 16 30 H 0.11 -0.44 7.89 -2.39 -0.02 -0.45 16 31 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.42 -3.35 6.76 -92.71 -0.63 -3.97 16 33 H 0.17 -0.69 8.06 -2.91 -0.02 -0.71 16 34 H 0.16 -1.34 4.84 -2.91 -0.01 -1.36 16 35 H 0.11 -1.48 7.96 -2.39 -0.02 -1.50 16 36 H 0.40 -5.08 8.74 -74.05 -0.65 -5.73 16 37 H -0.29 0.70 7.11 99.48 0.71 1.41 16 38 H -0.30 0.00 7.04 99.48 0.70 0.70 16 39 H 0.16 -1.52 6.41 -2.91 -0.02 -1.53 16 40 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.12 -1.60 8.08 -2.39 -0.02 -1.62 16 Total: 0.00 -31.00 352.54 2.06 -28.93 By element: Atomic # 1 Polarization: -18.09 SS G_CDS: -0.15 Total: -18.25 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 3.99 Total: 12.93 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -2.35 Total: -2.22 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -2.17 Total: -16.61 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.70 Total: -1.25 kcal Atomic # 14 Polarization: -5.59 SS G_CDS: 2.05 Total: -3.54 kcal Total: -31.00 2.06 -28.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_12335834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.533 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds