Wall clock time and date at job start Sun Mar 7 2021 14:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 H 1.09006 * 112.85174 * 314.66881 * 6 5 3 8 8 C 1.53785 * 113.61469 * 85.85800 * 6 5 3 9 9 C 1.53960 * 87.01698 * 139.95194 * 8 6 5 10 10 H 1.09010 * 113.60992 * 89.20337 * 9 8 6 11 11 N 1.46492 * 113.66740 * 220.06706 * 9 8 6 12 12 C 1.34777 * 120.00298 * 252.56118 * 11 9 8 13 13 O 1.21281 * 120.00050 * 0.02562 * 12 11 9 14 14 C 1.50704 * 120.00268 * 179.97438 * 12 11 9 15 15 C 1.50695 * 109.47343 * 180.02562 * 14 12 11 16 16 C 1.38238 * 120.00460 * 269.73022 * 15 14 12 17 17 C 1.38230 * 120.00084 * 179.73926 * 16 15 14 18 18 C 1.38231 * 120.00132 * 0.55829 * 17 16 15 19 19 C 1.50698 * 120.00345 * 179.72186 * 18 17 16 20 20 O 1.42902 * 109.47284 * 244.97519 * 19 18 17 21 21 Si 1.86305 * 109.47024 * 4.97369 * 19 18 17 22 22 C 1.38231 * 120.00081 * 359.69358 * 18 17 16 23 23 C 1.38236 * 119.99827 * 0.02727 * 22 18 17 24 24 C 1.53781 * 113.61747 * 183.47128 * 6 5 3 25 25 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 27 27 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 29 29 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 30 30 H 1.08990 * 113.61776 * 254.52903 * 8 6 5 31 31 H 1.09003 * 113.61076 * 25.43911 * 8 6 5 32 32 H 0.97001 * 120.00324 * 72.56172 * 11 9 8 33 33 H 1.09001 * 109.47099 * 300.00618 * 14 12 11 34 34 H 1.09007 * 109.46642 * 60.00122 * 14 12 11 35 35 H 1.08003 * 119.99863 * 0.02562 * 16 15 14 36 36 H 1.08005 * 119.99747 * 180.27500 * 17 16 15 37 37 H 1.08996 * 109.47459 * 124.97305 * 19 18 17 38 38 H 0.96703 * 113.99861 * 59.99894 * 20 19 18 39 39 H 1.48501 * 109.99867 * 58.67894 * 21 19 18 40 40 H 1.48502 * 110.00300 * 180.02562 * 21 19 18 41 41 H 1.08000 * 120.00385 * 180.02562 * 22 18 17 42 42 H 1.08004 * 120.00358 * 179.97438 * 23 22 18 43 43 H 1.09004 * 113.61304 * 334.56532 * 24 6 5 44 44 H 1.08993 * 113.61499 * 105.38745 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.4426 3.3481 -0.7154 8 6 4.0777 3.3620 1.4041 9 6 5.3581 4.0743 0.9314 10 1 5.1733 5.0459 0.4730 11 7 6.4162 4.1151 1.9437 12 6 6.7108 5.2746 2.5645 13 8 6.0996 6.2842 2.2853 14 6 7.7989 5.3163 3.6063 15 6 7.9275 6.7188 4.1425 16 6 8.7950 7.6118 3.5416 17 6 8.9089 8.8998 4.0302 18 6 8.1639 9.2915 5.1267 19 6 8.2927 10.6939 5.6632 20 8 8.8489 10.6514 6.9788 21 14 9.4091 11.6851 4.5487 22 6 7.3003 8.3971 5.7308 23 6 7.1821 7.1107 5.2387 24 6 5.5234 2.9341 -0.0870 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 3.9563 0.7806 0.8892 29 1 3.9557 0.7809 -0.8908 30 1 3.2557 4.0420 1.6273 31 1 4.2508 2.6317 2.1945 32 1 6.9049 3.3075 2.1674 33 1 7.5478 4.6376 4.4214 34 1 8.7439 5.0106 3.1570 35 1 9.3804 7.3044 2.6876 36 1 9.5834 9.5988 3.5580 37 1 7.3085 11.1607 5.6998 38 1 9.7266 10.2476 7.0219 39 1 8.8580 11.7101 3.1700 40 1 9.5448 13.0700 5.0672 41 1 6.7179 8.7032 6.5872 42 1 6.5076 6.4117 5.7108 43 1 6.0926 2.0865 0.2950 44 1 5.8669 3.2677 -1.0661 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_12335836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:24:23 Heat of formation + Delta-G solvation = -107.548710 kcal Electronic energy + Delta-G solvation = -25704.845510 eV Core-core repulsion = 21782.398892 eV Total energy + Delta-G solvation = -3922.446617 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73213 -41.20967 -40.42406 -39.31936 -37.64451 -37.48840 -34.79813 -33.97411 -31.94227 -31.62268 -29.69934 -28.36576 -26.69039 -26.00374 -24.32143 -23.81564 -22.37142 -21.67321 -21.42162 -20.44729 -18.62899 -18.44757 -18.00591 -17.91367 -17.57962 -17.24794 -16.86824 -16.52837 -16.31182 -16.10992 -15.97695 -15.53947 -15.00113 -14.86845 -14.71032 -14.52447 -14.45295 -14.11098 -13.93545 -13.47100 -13.37909 -13.24938 -13.13326 -12.92674 -12.82058 -12.74305 -12.26731 -12.13507 -12.00288 -11.87332 -11.82556 -11.72232 -11.47948 -11.33141 -10.92483 -10.45273 -10.00835 -9.87868 -9.61685 -5.05126 0.23841 0.44950 1.16881 1.28310 1.61418 1.64231 1.76442 1.92661 2.22776 2.80154 3.44414 3.49800 3.50108 3.63766 3.76032 3.79191 3.82529 3.90303 3.91747 4.04922 4.05628 4.24617 4.26150 4.33485 4.36275 4.46759 4.47110 4.48211 4.62736 4.63302 4.67844 4.72215 4.75022 4.81498 4.86405 5.02063 5.03831 5.08552 5.10417 5.30082 5.37665 5.41292 5.53119 5.59176 5.62864 6.01829 6.60878 6.70567 6.75428 7.31818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.099 4.099 7 H 0.081 0.919 8 C -0.148 4.148 9 C 0.116 3.884 10 H 0.083 0.917 11 N -0.705 5.705 12 C 0.510 3.490 13 O -0.586 6.586 14 C -0.097 4.097 15 C -0.072 4.072 16 C -0.110 4.110 17 C -0.122 4.122 18 C -0.130 4.130 19 C -0.077 4.077 20 O -0.555 6.555 21 Si 0.784 3.216 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.115 4.115 25 H 0.129 0.871 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.421 0.579 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.395 0.605 39 H -0.294 1.294 40 H -0.297 1.297 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 -10.297 -0.950 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.118 4.118 7 H 0.100 0.900 8 C -0.187 4.187 9 C 0.010 3.990 10 H 0.101 0.899 11 N -0.358 5.358 12 C 0.298 3.702 13 O -0.466 6.466 14 C -0.136 4.136 15 C -0.072 4.072 16 C -0.127 4.127 17 C -0.139 4.139 18 C -0.130 4.130 19 C -0.186 4.186 20 O -0.363 6.363 21 Si 0.690 3.310 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.153 4.153 25 H 0.147 0.853 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.259 0.741 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.116 0.884 38 H 0.245 0.755 39 H -0.221 1.221 40 H -0.225 1.225 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.895 -8.343 -1.516 10.327 hybrid contribution -1.507 0.111 0.286 1.538 sum 4.388 -8.232 -1.230 9.409 Atomic orbital electron populations 1.23468 0.75419 1.05470 1.02157 1.86509 1.24504 1.33483 1.83813 1.24656 0.93767 0.80776 0.70992 1.90690 1.68428 1.37605 1.46865 1.21544 0.84782 0.98391 1.08470 1.22149 0.97392 0.94447 0.97845 0.90019 1.23603 0.97327 1.00008 0.97724 1.22387 0.87467 0.99147 0.89958 0.89894 1.45854 1.37997 1.11609 1.40298 1.21157 0.84006 0.82924 0.82117 1.90750 1.54033 1.35915 1.65908 1.20777 0.99477 0.94981 0.98378 1.19619 0.96340 0.95982 0.95289 1.21263 0.98743 0.93065 0.99671 1.21168 0.99597 0.96985 0.96167 1.20401 0.98653 0.96653 0.97292 1.25198 1.04328 0.97614 0.91481 1.86460 1.38807 1.84399 1.26649 0.93759 0.86530 0.76771 0.73933 1.21089 0.98220 0.93692 0.99839 1.21239 0.98967 0.96458 0.96905 1.23338 0.94348 0.98054 0.99542 0.85324 0.92424 0.92335 0.84748 0.84636 0.94060 0.87858 0.74073 0.85218 0.84446 0.83751 0.83918 0.88396 0.75451 1.22102 1.22499 0.86172 0.85222 0.85813 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.67 10.56 -51.41 -0.54 -1.21 16 3 C 0.45 1.22 7.96 71.24 0.57 1.79 16 4 O -0.55 -5.87 15.54 21.97 0.34 -5.53 16 5 C -0.09 0.61 5.63 29.85 0.17 0.78 16 6 C -0.10 0.34 3.11 -10.27 -0.03 0.31 16 7 H 0.08 0.15 7.73 -2.38 -0.02 0.13 16 8 C -0.15 0.10 7.45 31.18 0.23 0.33 16 9 C 0.12 -0.18 4.24 45.58 0.19 0.02 16 10 H 0.08 0.47 7.47 -2.38 -0.02 0.45 16 11 N -0.71 3.43 5.36 -439.75 -2.36 1.08 16 12 C 0.51 0.77 7.82 87.66 0.69 1.46 16 13 O -0.59 -7.85 15.63 -3.03 -0.05 -7.89 16 14 C -0.10 0.52 5.83 29.10 0.17 0.69 16 15 C -0.07 -0.11 4.37 -19.87 -0.09 -0.20 16 16 C -0.11 -0.14 9.70 22.27 0.22 0.08 16 17 C -0.12 -0.24 8.67 22.27 0.19 -0.05 16 18 C -0.13 -0.56 5.35 -19.87 -0.11 -0.67 16 19 C -0.08 -0.26 2.80 71.24 0.20 -0.06 16 20 O -0.56 -1.70 12.83 -148.98 -1.91 -3.61 16 21 Si 0.78 0.62 29.80 68.60 2.04 2.66 16 22 C -0.11 -0.64 9.69 22.27 0.22 -0.42 16 23 C -0.12 -0.47 9.70 22.27 0.22 -0.25 16 24 C -0.12 0.96 7.40 31.12 0.23 1.19 16 25 H 0.13 -0.86 8.14 -2.39 -0.02 -0.87 16 26 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 27 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.13 -1.54 7.88 -2.39 -0.02 -1.56 16 29 H 0.14 -1.51 8.14 -2.39 -0.02 -1.53 16 30 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.10 -0.47 7.92 -2.39 -0.02 -0.49 16 32 H 0.42 -5.45 8.73 -92.71 -0.81 -6.26 16 33 H 0.13 -1.34 8.08 -2.39 -0.02 -1.36 16 34 H 0.14 -1.61 8.08 -2.38 -0.02 -1.63 16 35 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 36 H 0.14 -0.37 4.91 -2.91 -0.01 -0.38 16 37 H 0.10 0.56 7.96 -2.39 -0.02 0.54 16 38 H 0.40 -2.23 8.70 -74.06 -0.64 -2.87 16 39 H -0.29 -1.96 7.11 99.48 0.71 -1.25 16 40 H -0.30 -2.27 7.11 99.48 0.71 -1.56 16 41 H 0.12 0.65 8.06 -2.91 -0.02 0.63 16 42 H 0.13 0.14 8.06 -2.91 -0.02 0.12 16 43 H 0.12 -1.78 8.08 -2.38 -0.02 -1.80 16 44 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 Total: 0.00 -30.43 372.77 1.39 -29.04 By element: Atomic # 1 Polarization: -20.31 SS G_CDS: -0.39 Total: -20.70 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 4.26 Total: 6.17 kcal Atomic # 7 Polarization: 3.43 SS G_CDS: -2.36 Total: 1.08 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -2.16 Total: -18.25 kcal Atomic # 14 Polarization: 0.62 SS G_CDS: 2.04 Total: 2.66 kcal Total: -30.43 1.39 -29.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_12335836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.508 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds