Wall clock time and date at job start Sun Mar 7 2021 14:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99658 * 2 1 4 4 O 1.20824 * 120.00111 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99800 * 180.02562 * 3 2 1 6 6 C 1.52991 * 109.47186 * 179.97438 * 5 3 2 7 7 H 1.09007 * 112.85146 * 316.19556 * 6 5 3 8 8 C 1.53959 * 113.74619 * 87.40234 * 6 5 3 9 9 C 1.53775 * 87.01914 * 139.94508 * 8 6 5 10 10 H 1.09003 * 113.61761 * 89.23591 * 9 8 6 11 11 N 1.46501 * 113.61193 * 220.04971 * 9 8 6 12 12 C 1.34777 * 120.00114 * 254.14089 * 11 9 8 13 13 O 1.21553 * 119.99768 * 359.97438 * 12 11 9 14 14 C 1.47859 * 120.00302 * 180.02562 * 12 11 9 15 15 C 1.39576 * 120.11145 * 359.97438 * 14 12 11 16 16 C 1.38021 * 119.98812 * 180.02562 * 15 14 12 17 17 C 1.38215 * 120.21370 * 359.97438 * 16 15 14 18 18 C 1.38953 * 120.23263 * 359.97438 * 17 16 15 19 19 N 1.40229 * 119.99984 * 180.02562 * 18 17 16 20 20 C 1.36559 * 125.66743 * 245.17145 * 19 18 17 21 21 C 1.50701 * 125.90113 * 0.05361 * 20 19 18 22 22 C 1.34851 * 108.20023 * 180.28376 * 20 19 18 23 23 C 1.40943 * 107.46605 * 359.73325 * 22 20 19 24 24 C 1.50702 * 126.26614 * 180.02562 * 23 22 20 25 25 O 1.42902 * 109.46773 * 254.99948 * 24 23 22 26 26 Si 1.86299 * 109.47105 * 15.00098 * 24 23 22 27 27 C 1.34852 * 107.46493 * 0.02562 * 23 22 20 28 28 C 1.50703 * 125.89723 * 179.97438 * 27 23 22 29 29 C 1.38552 * 120.00654 * 0.27873 * 18 17 16 30 30 C 1.53777 * 87.17572 * 334.63775 * 9 8 6 31 31 H 1.09004 * 109.47133 * 299.99719 * 1 2 3 32 32 H 1.09000 * 109.47515 * 59.99851 * 1 2 3 33 33 H 1.09006 * 109.47243 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46876 * 59.99880 * 5 3 2 35 35 H 1.09003 * 109.46701 * 299.99888 * 5 3 2 36 36 H 1.09003 * 113.60939 * 25.41979 * 8 6 5 37 37 H 1.09001 * 113.66378 * 254.47749 * 8 6 5 38 38 H 0.97003 * 120.00177 * 74.13781 * 11 9 8 39 39 H 1.08005 * 120.01106 * 0.02562 * 15 14 12 40 40 H 1.07999 * 119.89308 * 180.02562 * 16 15 14 41 41 H 1.07998 * 119.88634 * 180.02562 * 17 16 15 42 42 H 1.08997 * 109.47345 * 270.28948 * 21 20 19 43 43 H 1.09001 * 109.47256 * 30.29827 * 21 20 19 44 44 H 1.09003 * 109.46982 * 150.28756 * 21 20 19 45 45 H 1.07999 * 126.26637 * 179.75643 * 22 20 19 46 46 H 1.09000 * 109.46914 * 135.00305 * 24 23 22 47 47 H 0.96700 * 113.99701 * 60.00265 * 25 24 23 48 48 H 1.48502 * 110.00035 * 58.68172 * 26 24 23 49 49 H 1.48497 * 109.99993 * 179.97438 * 26 24 23 50 50 H 1.09002 * 109.47152 * 90.02525 * 28 27 23 51 51 H 1.09001 * 109.46980 * 330.02625 * 28 27 23 52 52 H 1.09004 * 109.47113 * 210.02606 * 28 27 23 53 53 H 1.07996 * 120.10772 * 179.72497 * 29 18 17 54 54 H 1.09001 * 113.61607 * 139.93983 * 30 9 8 55 55 H 1.09002 * 113.61922 * 270.84425 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7420 -0.0011 7 1 3.4246 3.3534 -0.6964 8 6 4.1151 3.3550 1.4065 9 6 5.3813 4.0689 0.9047 10 1 5.1850 5.0432 0.4570 11 7 6.4649 4.1036 1.8900 12 6 6.7548 5.2522 2.5327 13 8 6.1175 6.2595 2.2945 14 6 7.8488 5.2874 3.5268 15 6 8.5825 4.1323 3.8018 16 6 9.6028 4.1680 4.7306 17 6 9.9020 5.3450 5.3903 18 6 9.1781 6.5005 5.1228 19 7 9.4862 7.6922 5.7946 20 6 8.6683 8.3466 6.6708 21 6 7.2847 7.9124 7.0809 22 6 9.3106 9.4512 7.1018 23 6 10.5727 9.4784 6.4750 24 6 11.6356 10.5313 6.6562 25 8 11.6730 11.3736 5.5024 26 14 11.2436 11.5568 8.1613 27 6 10.6550 8.3896 5.6836 28 6 11.8313 8.0112 4.8209 29 6 8.1485 6.4741 4.1961 30 6 5.5208 2.9348 -0.1245 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.9556 0.7810 -0.8908 35 1 3.9563 0.7806 0.8892 36 1 4.3087 2.6203 2.1881 37 1 3.3003 4.0348 1.6556 38 1 6.9738 3.2998 2.0799 39 1 8.3519 3.2108 3.2879 40 1 10.1698 3.2734 4.9419 41 1 10.7018 5.3670 6.1158 42 1 6.5515 8.3441 6.3996 43 1 7.2192 6.8250 7.0438 44 1 7.0827 8.2540 8.0961 45 1 8.9281 10.1812 7.7998 46 1 12.6050 10.0503 6.7865 47 1 10.8418 11.8347 5.3249 48 1 11.1703 10.6876 9.3631 49 1 12.2847 12.5985 8.3513 50 1 12.5141 7.3828 5.3927 51 1 12.3512 8.9137 4.4993 52 1 11.4794 7.4635 3.9466 53 1 7.5819 7.3702 3.9901 54 1 5.8391 3.2759 -1.1096 55 1 6.0994 2.0851 0.2377 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_12335854.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:24:34 Heat of formation + Delta-G solvation = -48.348689 kcal Electronic energy + Delta-G solvation = -36604.792007 eV Core-core repulsion = 31768.195306 eV Total energy + Delta-G solvation = -4836.596701 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.192 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.90286 -41.77462 -41.31016 -40.04059 -39.04732 -37.68465 -37.49972 -35.18567 -34.16678 -33.71469 -32.44060 -31.50801 -30.37977 -30.16472 -28.41758 -27.22967 -26.70696 -25.88309 -24.77825 -23.89525 -23.65941 -22.09116 -21.70685 -21.09670 -20.72874 -20.12825 -18.78103 -18.52725 -17.97118 -17.58294 -17.53248 -17.46704 -17.35207 -17.09743 -16.66434 -16.30367 -16.06491 -15.95980 -15.49124 -15.30850 -15.03821 -14.97465 -14.87620 -14.68205 -14.48915 -14.35279 -14.18932 -14.01072 -13.96956 -13.64209 -13.49599 -13.45159 -13.36799 -13.25488 -13.20142 -12.94541 -12.91491 -12.80871 -12.75059 -12.45494 -12.17686 -12.15406 -11.87759 -11.81572 -11.80773 -11.48941 -11.34457 -11.14342 -10.48277 -10.34162 -10.28123 -10.05540 -9.52142 -8.85096 -4.92913 -0.44653 -0.05711 1.07355 1.18549 1.43514 1.62113 1.64691 1.73900 1.78131 1.82731 2.00781 2.07837 2.57308 3.41144 3.45115 3.50144 3.65716 3.66732 3.69495 3.75782 3.81234 3.88010 3.89990 3.93696 3.96669 4.09482 4.18239 4.25126 4.27220 4.29026 4.32336 4.39739 4.44489 4.48494 4.56875 4.63053 4.63912 4.65715 4.67040 4.69050 4.72592 4.74176 4.78765 4.86195 4.96410 4.99663 5.00214 5.01179 5.06404 5.09261 5.13146 5.16187 5.22745 5.34544 5.41118 5.51599 5.57737 5.97587 6.13637 6.41093 6.45530 6.72031 6.83604 7.07802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.098 4.098 7 H 0.084 0.916 8 C -0.147 4.147 9 C 0.114 3.886 10 H 0.088 0.912 11 N -0.694 5.694 12 C 0.556 3.444 13 O -0.583 6.583 14 C -0.133 4.133 15 C -0.063 4.063 16 C -0.100 4.100 17 C -0.086 4.086 18 C 0.096 3.904 19 N -0.406 5.406 20 C 0.011 3.989 21 C -0.082 4.082 22 C -0.194 4.194 23 C -0.206 4.206 24 C -0.037 4.037 25 O -0.560 6.560 26 Si 0.782 3.218 27 C 0.034 3.966 28 C -0.082 4.082 29 C -0.066 4.066 30 C -0.115 4.115 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.045 0.955 38 H 0.419 0.581 39 H 0.173 0.827 40 H 0.176 0.824 41 H 0.140 0.860 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.164 0.836 46 H 0.098 0.902 47 H 0.391 0.609 48 H -0.292 1.292 49 H -0.300 1.300 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.062 0.938 53 H 0.115 0.885 54 H 0.087 0.913 55 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 -10.789 -0.670 10.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.117 4.117 7 H 0.102 0.898 8 C -0.186 4.186 9 C 0.009 3.991 10 H 0.106 0.894 11 N -0.346 5.346 12 C 0.344 3.656 13 O -0.463 6.463 14 C -0.137 4.137 15 C -0.081 4.081 16 C -0.118 4.118 17 C -0.106 4.106 18 C 0.007 3.993 19 N -0.081 5.081 20 C -0.097 4.097 21 C -0.140 4.140 22 C -0.217 4.217 23 C -0.213 4.213 24 C -0.148 4.148 25 O -0.368 6.368 26 Si 0.689 3.311 27 C -0.076 4.076 28 C -0.139 4.139 29 C -0.086 4.086 30 C -0.153 4.153 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.064 0.936 38 H 0.259 0.741 39 H 0.190 0.810 40 H 0.194 0.806 41 H 0.158 0.842 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.181 0.819 46 H 0.116 0.884 47 H 0.240 0.760 48 H -0.219 1.219 49 H -0.228 1.228 50 H 0.100 0.900 51 H 0.101 0.899 52 H 0.081 0.919 53 H 0.133 0.867 54 H 0.105 0.895 55 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.316 -10.051 -0.258 10.140 hybrid contribution -0.239 -0.044 -0.113 0.268 sum 1.077 -10.095 -0.372 10.159 Atomic orbital electron populations 1.23467 0.75426 1.05441 1.02174 1.86509 1.24493 1.33506 1.83816 1.24654 0.93780 0.80773 0.71002 1.90690 1.68420 1.37590 1.46854 1.21541 0.84786 0.98316 1.08543 1.22174 0.97233 0.94584 0.97751 0.89775 1.23621 0.97151 1.00067 0.97773 1.22505 0.86711 0.99749 0.90125 0.89389 1.45720 1.36071 1.11811 1.40970 1.18514 0.82794 0.83480 0.80788 1.90799 1.53430 1.35719 1.66383 1.19758 0.98936 0.95148 0.99821 1.21812 0.93002 0.97327 0.95984 1.21456 0.97204 0.98274 0.94870 1.21653 0.98858 0.91168 0.98879 1.17673 0.98947 0.86024 0.96667 1.41526 1.13705 1.18297 1.34570 1.20798 0.95672 0.95819 0.97430 1.20361 0.89351 1.01197 1.03074 1.20847 0.94949 0.99734 1.06202 1.19792 0.97984 0.98952 1.04557 1.24448 0.98106 0.93485 0.98712 1.86412 1.40893 1.62138 1.47351 0.93537 0.86110 0.78282 0.73144 1.20599 0.89033 0.94533 1.03413 1.20341 0.93352 1.02844 0.97410 1.21120 0.95976 0.98309 0.93206 1.23363 0.94608 0.97900 0.99408 0.92399 0.92319 0.85389 0.84548 0.84686 0.87701 0.93635 0.74109 0.80954 0.80649 0.84173 0.91027 0.92228 0.88354 0.81894 0.88420 0.75971 1.21947 1.22791 0.89997 0.89933 0.91894 0.86705 0.89458 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.38 10.57 -51.38 -0.54 -0.92 16 3 C 0.45 0.79 7.96 71.24 0.57 1.36 16 4 O -0.55 -5.33 15.51 21.97 0.34 -4.99 16 5 C -0.09 0.72 5.65 29.85 0.17 0.89 16 6 C -0.10 0.45 3.15 -10.21 -0.03 0.42 16 7 H 0.08 0.04 7.68 -2.38 -0.02 0.03 16 8 C -0.15 0.27 7.45 31.18 0.23 0.50 16 9 C 0.11 -0.24 4.21 45.51 0.19 -0.05 16 10 H 0.09 0.40 7.50 -2.39 -0.02 0.38 16 11 N -0.69 2.77 5.31 -442.90 -2.35 0.42 16 12 C 0.56 2.40 7.77 86.79 0.67 3.07 16 13 O -0.58 -8.60 15.96 -3.88 -0.06 -8.67 16 14 C -0.13 -0.08 5.87 -20.10 -0.12 -0.20 16 15 C -0.06 0.49 9.54 22.54 0.21 0.70 16 16 C -0.10 0.81 10.02 22.21 0.22 1.03 16 17 C -0.09 0.21 9.72 22.44 0.22 0.43 16 18 C 0.10 0.30 4.66 38.04 0.18 0.48 16 19 N -0.41 -2.37 2.79 -320.36 -0.89 -3.26 16 20 C 0.01 0.06 6.81 41.05 0.28 0.34 16 21 C -0.08 -0.13 9.92 71.24 0.71 0.58 16 22 C -0.19 -0.87 9.27 22.15 0.21 -0.66 16 23 C -0.21 -1.19 5.35 -19.98 -0.11 -1.29 16 24 C -0.04 -0.15 2.50 71.24 0.18 0.03 16 25 O -0.56 -2.65 12.88 -148.98 -1.92 -4.57 16 26 Si 0.78 1.63 30.81 68.60 2.11 3.74 16 27 C 0.03 0.21 6.81 41.05 0.28 0.49 16 28 C -0.08 -0.23 9.72 71.24 0.69 0.47 16 29 C -0.07 -0.33 9.26 22.65 0.21 -0.12 16 30 C -0.12 1.07 7.39 31.12 0.23 1.30 16 31 H 0.06 -0.02 8.13 -2.38 -0.02 -0.04 16 32 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 33 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 34 H 0.14 -1.67 8.14 -2.39 -0.02 -1.69 16 35 H 0.14 -1.71 7.86 -2.39 -0.02 -1.73 16 36 H 0.10 -0.61 7.91 -2.39 -0.02 -0.63 16 37 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.42 -5.19 6.74 -92.71 -0.63 -5.81 16 39 H 0.17 -2.78 6.40 -2.91 -0.02 -2.80 16 40 H 0.18 -2.57 8.06 -2.91 -0.02 -2.60 16 41 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 42 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.06 0.11 7.84 -2.39 -0.02 0.09 16 44 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.16 -0.07 6.59 -2.91 -0.02 -0.09 16 46 H 0.10 0.48 7.96 -2.39 -0.02 0.46 16 47 H 0.39 -0.83 8.70 -74.06 -0.64 -1.47 16 48 H -0.29 -2.21 7.11 99.48 0.71 -1.50 16 49 H -0.30 -2.57 7.11 99.48 0.71 -1.87 16 50 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 51 H 0.08 0.33 7.87 -2.39 -0.02 0.31 16 52 H 0.06 0.16 7.83 -2.38 -0.02 0.14 16 53 H 0.11 1.16 7.65 -2.91 -0.02 1.14 16 54 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 55 H 0.13 -1.97 8.07 -2.39 -0.02 -1.99 16 Total: 0.00 -32.04 457.60 2.77 -29.27 By element: Atomic # 1 Polarization: -21.62 SS G_CDS: -0.31 Total: -21.93 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.39 Total: 10.91 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -3.25 Total: -2.85 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -2.18 Total: -19.15 kcal Atomic # 14 Polarization: 1.63 SS G_CDS: 2.11 Total: 3.74 kcal Total: -32.04 2.77 -29.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_12335854.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.076 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds