Wall clock time and date at job start Sun Mar 7 2021 14:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 116.99483 * 2 1 4 4 O 1.20824 * 120.00576 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99485 * 179.97438 * 3 2 1 6 6 C 1.53010 * 109.47006 * 180.02562 * 5 3 2 7 7 H 1.08994 * 112.84618 * 316.19789 * 6 5 3 8 8 C 1.53946 * 113.74394 * 87.40189 * 6 5 3 9 9 C 1.53780 * 87.02044 * 139.94258 * 8 6 5 10 10 H 1.09004 * 113.61410 * 89.23252 * 9 8 6 11 11 N 1.46502 * 113.61601 * 220.04578 * 9 8 6 12 12 C 1.34776 * 120.00110 * 253.86395 * 11 9 8 13 13 O 1.21576 * 120.00115 * 0.27568 * 12 11 9 14 14 C 1.47666 * 119.99634 * 180.27621 * 12 11 9 15 15 C 1.40003 * 120.45868 * 353.98651 * 14 12 11 16 16 N 1.31303 * 121.37976 * 179.97438 * 15 14 12 17 17 C 1.32823 * 121.88869 * 0.02587 * 16 15 14 18 18 N 1.37159 * 132.96457 * 180.02562 * 17 16 15 19 19 C 1.36941 * 110.11434 * 179.97438 * 18 17 16 20 20 C 1.34176 * 109.95410 * 0.02562 * 19 18 17 21 21 C 1.50696 * 126.60363 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47639 * 104.97334 * 21 20 19 23 23 Si 1.86300 * 109.47149 * 344.97107 * 21 20 19 24 24 C 1.41016 * 120.08291 * 359.97438 * 17 16 15 25 25 C 1.39277 * 119.61949 * 359.70211 * 24 17 16 26 26 C 1.50707 * 121.03252 * 180.29450 * 25 24 17 27 27 C 1.53777 * 87.17338 * 334.63972 * 9 8 6 28 28 H 1.08997 * 109.46947 * 299.99932 * 1 2 3 29 29 H 1.09004 * 109.46936 * 59.99991 * 1 2 3 30 30 H 1.08998 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47613 * 60.00467 * 5 3 2 32 32 H 1.09000 * 109.47543 * 300.00060 * 5 3 2 33 33 H 1.09010 * 113.61436 * 25.42554 * 8 6 5 34 34 H 1.08998 * 113.66897 * 254.47554 * 8 6 5 35 35 H 0.96998 * 119.99492 * 74.13885 * 11 9 8 36 36 H 1.08002 * 119.30958 * 359.97438 * 15 14 12 37 37 H 0.96997 * 124.94296 * 359.93673 * 18 17 16 38 38 H 1.08002 * 125.02595 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.47303 * 224.97488 * 21 20 19 40 40 H 0.96702 * 113.99662 * 300.00774 * 22 21 20 41 41 H 1.48500 * 110.00137 * 179.97438 * 23 21 20 42 42 H 1.48499 * 110.00034 * 301.32185 * 23 21 20 43 43 H 1.08998 * 109.47213 * 263.97790 * 26 25 24 44 44 H 1.08997 * 109.46561 * 23.97644 * 26 25 24 45 45 H 1.08998 * 109.47007 * 143.97182 * 26 25 24 46 46 H 1.09000 * 113.61835 * 139.93711 * 27 9 8 47 47 H 1.09008 * 113.61163 * 270.75977 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7422 0.0011 7 1 3.4251 3.3537 -0.6942 8 6 4.1141 3.3544 1.4090 9 6 5.3807 4.0685 0.9086 10 1 5.1847 5.0430 0.4612 11 7 6.4636 4.1028 1.8947 12 6 6.7566 5.2525 2.5341 13 8 6.1191 6.2600 2.2962 14 6 7.8521 5.2884 3.5237 15 6 8.5094 4.1103 3.8977 16 7 9.4860 4.1213 4.7753 17 6 9.8988 5.2446 5.3516 18 7 10.8748 5.5171 6.2760 19 6 10.9043 6.8589 6.5481 20 6 9.9680 7.4932 5.8260 21 6 9.6756 8.9715 5.8342 22 8 10.1907 9.5657 4.6410 23 14 10.4841 9.7563 7.3178 24 6 9.2860 6.4724 5.0266 25 6 8.2514 6.4999 4.0946 26 6 7.5785 7.7950 3.7188 27 6 5.5209 2.9350 -0.1211 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7807 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 4.3072 2.6194 2.1905 34 1 3.2991 4.0341 1.6579 35 1 6.9722 3.2990 2.0846 36 1 8.2070 3.1727 3.4551 37 1 11.4587 4.8556 6.6788 38 1 11.5811 7.3360 7.2414 39 1 8.5980 9.1285 5.8822 40 1 11.1462 9.4643 4.5321 41 1 10.2037 11.2145 7.3370 42 1 9.9803 9.1252 8.5640 43 1 6.6718 7.9186 4.3111 44 1 8.2560 8.6262 3.9138 45 1 7.3211 7.7767 2.6598 46 1 5.8400 3.2765 -1.1058 47 1 6.1005 2.0857 0.2407 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_12890568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:25:19 Heat of formation + Delta-G solvation = -54.499600 kcal Electronic energy + Delta-G solvation = -31531.891077 eV Core-core repulsion = 27068.903120 eV Total energy + Delta-G solvation = -4462.987957 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.84983 -41.71130 -41.11126 -39.70012 -38.62032 -37.71802 -37.49314 -35.30181 -34.73116 -32.05469 -31.77120 -30.69983 -28.94600 -28.36241 -26.67777 -26.51697 -25.25339 -24.29692 -23.62101 -22.05934 -21.63520 -20.73743 -20.46053 -19.30194 -18.79264 -18.51129 -17.89063 -17.62950 -17.56493 -17.42395 -17.01451 -16.73556 -16.36381 -16.16995 -15.97989 -15.53758 -15.52597 -15.20716 -14.86513 -14.64186 -14.46271 -14.22423 -14.04186 -13.87493 -13.79162 -13.64618 -13.47013 -13.35165 -13.22940 -13.15737 -12.89387 -12.73421 -12.31322 -12.11668 -12.03518 -11.85800 -11.80298 -11.46572 -11.31034 -11.17165 -11.13369 -10.55669 -10.20838 -10.09618 -9.61273 -9.11179 -4.98951 -0.35961 -0.07701 1.18636 1.35339 1.43931 1.66217 1.75485 1.76333 1.79602 2.05798 2.11438 2.75020 3.31124 3.45072 3.48472 3.50881 3.59289 3.64783 3.71008 3.75074 3.80976 3.86008 3.91838 4.15487 4.24617 4.26608 4.27705 4.29718 4.35892 4.45985 4.49530 4.58916 4.63546 4.64754 4.68767 4.75301 4.77077 4.82176 4.88238 4.97153 5.05553 5.11726 5.16607 5.24428 5.29177 5.39423 5.42817 5.61409 5.73838 6.24178 6.49808 6.72162 6.83019 6.88891 7.18077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.545 6.545 5 C -0.096 4.096 6 C -0.097 4.097 7 H 0.085 0.915 8 C -0.148 4.148 9 C 0.117 3.883 10 H 0.091 0.909 11 N -0.700 5.700 12 C 0.568 3.432 13 O -0.571 6.571 14 C -0.241 4.241 15 C 0.181 3.819 16 N -0.514 5.514 17 C 0.288 3.712 18 N -0.559 5.559 19 C 0.098 3.902 20 C -0.208 4.208 21 C -0.050 4.050 22 O -0.558 6.558 23 Si 0.806 3.194 24 C -0.167 4.167 25 C 0.058 3.942 26 C -0.121 4.121 27 C -0.117 4.117 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.416 0.584 36 H 0.198 0.802 37 H 0.440 0.560 38 H 0.232 0.768 39 H 0.092 0.908 40 H 0.395 0.605 41 H -0.306 1.306 42 H -0.281 1.281 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.385 -6.696 2.028 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.298 3.702 4 O -0.435 6.435 5 C -0.133 4.133 6 C -0.116 4.116 7 H 0.103 0.897 8 C -0.187 4.187 9 C 0.013 3.987 10 H 0.109 0.891 11 N -0.351 5.351 12 C 0.356 3.644 13 O -0.451 6.451 14 C -0.249 4.249 15 C 0.012 3.988 16 N -0.227 5.227 17 C 0.054 3.946 18 N -0.166 5.166 19 C -0.029 4.029 20 C -0.215 4.215 21 C -0.159 4.159 22 O -0.366 6.366 23 Si 0.711 3.289 24 C -0.175 4.175 25 C 0.049 3.951 26 C -0.177 4.177 27 C -0.154 4.154 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.255 0.745 36 H 0.214 0.786 37 H 0.281 0.719 38 H 0.248 0.752 39 H 0.110 0.890 40 H 0.245 0.755 41 H -0.234 1.234 42 H -0.208 1.208 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.542 -5.941 2.856 10.017 hybrid contribution -1.508 0.236 -0.339 1.564 sum 6.034 -5.705 2.518 8.677 Atomic orbital electron populations 1.23468 0.75426 1.05446 1.02172 1.86512 1.24504 1.33507 1.83828 1.24638 0.93744 0.80777 0.70995 1.90687 1.68403 1.37565 1.46847 1.21546 0.84824 0.98417 1.08465 1.22168 0.97201 0.94498 0.97754 0.89658 1.23619 0.97303 1.00074 0.97690 1.22470 0.86574 0.99731 0.89975 0.89126 1.45726 1.36276 1.11664 1.41471 1.18103 0.82457 0.83507 0.80296 1.90746 1.52998 1.34839 1.66560 1.20537 1.03389 0.95406 1.05538 1.22985 0.87975 0.97513 0.90304 1.66524 1.16276 1.27924 1.11973 1.18783 0.92270 0.90009 0.93536 1.41616 1.30292 1.09224 1.35477 1.22398 0.99439 0.81143 0.99938 1.20804 1.01721 0.95581 1.03418 1.24738 1.02415 0.89764 0.99000 1.86476 1.29483 1.78243 1.42404 0.94068 0.87576 0.75454 0.71823 1.19783 1.00310 0.95205 1.02157 1.20062 0.90491 0.95363 0.89176 1.21070 0.99762 0.93647 1.03230 1.23365 0.94571 0.98011 0.99480 0.92442 0.92274 0.85369 0.84550 0.84861 0.87982 0.93625 0.74546 0.78587 0.71891 0.75174 0.89023 0.75515 1.23410 1.20786 0.91357 0.89728 0.90174 0.89429 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.37 -0.89 10.57 -51.39 -0.54 -1.43 16 3 C 0.45 1.48 7.96 71.24 0.57 2.04 16 4 O -0.55 -6.06 15.51 21.97 0.34 -5.72 16 5 C -0.10 0.55 5.65 29.85 0.17 0.72 16 6 C -0.10 0.27 3.15 -10.21 -0.03 0.24 16 7 H 0.09 0.17 7.68 -2.39 -0.02 0.15 16 8 C -0.15 -0.05 7.45 31.18 0.23 0.19 16 9 C 0.12 0.00 4.21 45.52 0.19 0.19 16 10 H 0.09 0.53 7.50 -2.39 -0.02 0.52 16 11 N -0.70 0.57 5.31 -443.07 -2.35 -1.78 16 12 C 0.57 4.22 7.72 86.73 0.67 4.89 16 13 O -0.57 -8.83 13.12 -3.95 -0.05 -8.89 16 14 C -0.24 -1.53 5.89 -19.99 -0.12 -1.65 16 15 C 0.18 0.30 10.67 85.20 0.91 1.20 16 16 N -0.51 -2.29 10.37 -191.75 -1.99 -4.28 16 17 C 0.29 1.17 8.42 134.02 1.13 2.30 16 18 N -0.56 2.19 6.04 -192.25 -1.16 1.03 16 19 C 0.10 -0.65 10.44 82.97 0.87 0.22 16 20 C -0.21 -0.04 5.57 -18.64 -0.10 -0.14 16 21 C -0.05 0.01 1.88 71.23 0.13 0.14 16 22 O -0.56 -0.41 11.64 -148.98 -1.73 -2.14 16 23 Si 0.81 -4.04 30.77 68.60 2.11 -1.93 16 24 C -0.17 -1.05 6.16 -20.19 -0.12 -1.17 16 25 C 0.06 0.53 5.98 -19.25 -0.12 0.41 16 26 C -0.12 -1.30 8.45 71.24 0.60 -0.70 16 27 C -0.12 0.83 7.39 31.12 0.23 1.06 16 28 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 29 H 0.06 0.03 8.13 -2.38 -0.02 0.01 16 30 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.14 -1.43 8.14 -2.39 -0.02 -1.45 16 32 H 0.13 -1.39 7.86 -2.39 -0.02 -1.41 16 33 H 0.10 -0.32 7.91 -2.38 -0.02 -0.34 16 34 H 0.04 0.31 8.14 -2.39 -0.02 0.30 16 35 H 0.42 -3.43 6.79 -92.71 -0.63 -4.06 16 36 H 0.20 -1.44 6.43 -2.91 -0.02 -1.46 16 37 H 0.44 -4.27 8.96 -92.71 -0.83 -5.11 16 38 H 0.23 -3.87 6.36 -2.91 -0.02 -3.89 16 39 H 0.09 0.35 7.16 -2.38 -0.02 0.33 16 40 H 0.39 -3.26 8.70 -74.06 -0.64 -3.90 16 41 H -0.31 -1.20 7.11 99.48 0.71 -0.49 16 42 H -0.28 0.17 7.11 99.48 0.71 0.88 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.08 0.82 4.79 -2.39 -0.01 0.81 16 45 H 0.08 1.13 5.97 -2.39 -0.01 1.12 16 46 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 47 H 0.12 -1.60 8.07 -2.38 -0.02 -1.61 16 Total: 0.00 -34.30 386.19 0.02 -34.28 By element: Atomic # 1 Polarization: -19.26 SS G_CDS: -1.00 Total: -20.26 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.40 Total: 11.12 kcal Atomic # 7 Polarization: 0.47 SS G_CDS: -5.50 Total: -5.03 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -1.99 Total: -18.18 kcal Atomic # 14 Polarization: -4.04 SS G_CDS: 2.11 Total: -1.93 kcal Total: -34.30 0.02 -34.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_12890568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.224 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds