Wall clock time and date at job start Sun Mar 7 2021 14:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99822 * 2 1 4 4 O 1.20819 * 120.00275 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99620 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46954 * 180.02562 * 5 3 2 7 7 H 1.08997 * 112.85474 * 43.80300 * 6 5 3 8 8 C 1.53781 * 113.61406 * 175.00066 * 6 5 3 9 9 C 1.53786 * 87.17350 * 140.02181 * 8 6 5 10 10 H 1.08993 * 113.61491 * 89.15923 * 9 8 6 11 11 N 1.46501 * 113.61366 * 220.06429 * 9 8 6 12 12 C 1.34773 * 120.00122 * 204.99908 * 11 9 8 13 13 O 1.21584 * 119.99539 * 359.97438 * 12 11 9 14 14 C 1.47600 * 120.00108 * 179.97438 * 12 11 9 15 15 C 1.39705 * 120.09019 * 359.72242 * 14 12 11 16 16 C 1.37726 * 119.91397 * 179.71646 * 15 14 12 17 17 C 1.50699 * 119.95746 * 180.29678 * 16 15 14 18 18 C 1.38975 * 120.08416 * 0.58324 * 16 15 14 19 19 O 1.35709 * 119.91229 * 179.69365 * 18 16 15 20 20 C 1.39018 * 120.17893 * 359.67735 * 18 16 15 21 21 C 1.50700 * 119.95751 * 180.02562 * 20 18 16 22 22 O 1.42897 * 109.46839 * 285.01350 * 21 20 18 23 23 Si 1.86305 * 109.46918 * 165.01858 * 21 20 18 24 24 C 1.37687 * 120.08697 * 0.03451 * 20 18 16 25 25 C 1.53782 * 113.68747 * 272.53598 * 6 5 3 26 26 H 1.08996 * 109.47402 * 59.98923 * 1 2 3 27 27 H 1.08995 * 109.46925 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46597 * 299.99776 * 1 2 3 29 29 H 1.08995 * 109.47062 * 59.99970 * 5 3 2 30 30 H 1.09003 * 109.47062 * 300.00361 * 5 3 2 31 31 H 1.09002 * 113.61445 * 254.61180 * 8 6 5 32 32 H 1.09002 * 113.61408 * 25.42911 * 8 6 5 33 33 H 0.97002 * 119.99797 * 24.99368 * 11 9 8 34 34 H 1.07999 * 120.04457 * 0.02562 * 15 14 12 35 35 H 1.08994 * 109.47379 * 270.27998 * 17 16 15 36 36 H 1.08996 * 109.47022 * 30.28952 * 17 16 15 37 37 H 1.09006 * 109.46373 * 150.28524 * 17 16 15 38 38 H 0.96696 * 114.00269 * 269.97796 * 19 18 16 39 39 H 1.08995 * 109.47411 * 45.01507 * 21 20 18 40 40 H 0.96706 * 114.00334 * 300.00639 * 22 21 20 41 41 H 1.48496 * 110.00231 * 58.67720 * 23 21 20 42 42 H 1.48502 * 109.99789 * 179.97438 * 23 21 20 43 43 H 1.07997 * 120.04542 * 179.97438 * 24 20 18 44 44 H 1.08997 * 113.61668 * 334.55355 * 25 6 5 45 45 H 1.08994 * 113.61387 * 105.46089 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4253 3.3531 0.6961 8 6 5.5210 2.9347 0.1225 9 6 5.3834 4.0688 -0.9070 10 1 5.1874 5.0432 -0.4596 11 7 6.4668 4.1014 -1.8926 12 6 6.7790 5.2564 -2.5130 13 8 6.1611 6.2712 -2.2550 14 6 7.8709 5.2893 -3.5056 15 6 8.5859 4.1255 -3.7992 16 6 9.6002 4.1590 -4.7302 17 6 10.3677 2.9028 -5.0525 18 6 9.9208 5.3512 -5.3685 19 8 10.9250 5.3816 -6.2808 20 6 9.2153 6.5126 -5.0752 21 6 9.5668 7.8025 -5.7708 22 8 10.7795 8.3236 -5.2234 23 14 8.1930 9.0361 -5.5226 24 6 8.1960 6.4860 -4.1500 25 6 4.1150 3.3531 -1.4063 26 1 -0.3634 0.5140 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.9557 0.7809 -0.8908 30 1 3.9564 0.7805 0.8891 31 1 5.8401 3.2754 1.1074 32 1 6.0993 2.0845 -0.2392 33 1 6.9595 3.2916 -2.0986 34 1 8.3403 3.1997 -3.3003 35 1 11.2245 2.8189 -4.3841 36 1 9.7186 2.0370 -4.9219 37 1 10.7150 2.9442 -6.0850 38 1 11.7932 5.5790 -5.9037 39 1 9.6997 7.6162 -6.8364 40 1 10.7340 8.5133 -4.2762 41 1 7.9804 9.2748 -4.0724 42 1 8.5277 10.3128 -6.2033 43 1 7.6487 7.3888 -3.9224 44 1 4.3090 2.6179 -2.1873 45 1 3.2992 4.0316 -1.6555 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:25:47 Heat of formation + Delta-G solvation = -146.978612 kcal Electronic energy + Delta-G solvation = -28539.133191 eV Core-core repulsion = 24296.294573 eV Total energy + Delta-G solvation = -4242.838618 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.86671 -41.54170 -40.72334 -39.41603 -37.97821 -37.53533 -37.43825 -35.00471 -33.97272 -32.16955 -31.12488 -28.40861 -27.96871 -26.93384 -26.67356 -25.55157 -23.77552 -22.15334 -21.77197 -21.56146 -20.48839 -19.58621 -18.80114 -18.50177 -18.15545 -17.88202 -17.55507 -17.27744 -16.73687 -16.59202 -16.13698 -16.06840 -16.01408 -15.83796 -15.33707 -14.86332 -14.73154 -14.50576 -14.33373 -14.10564 -13.89506 -13.86560 -13.45711 -13.35470 -13.30069 -12.94750 -12.88071 -12.82579 -12.72967 -12.48001 -12.14579 -11.93297 -11.85474 -11.80084 -11.63825 -11.46599 -11.31834 -11.05488 -10.65243 -10.16919 -9.96337 -9.63493 -5.02513 -0.39446 0.07532 1.19354 1.19813 1.49357 1.59535 1.77960 1.82148 2.08172 2.54971 3.14799 3.32756 3.43902 3.47291 3.50548 3.58465 3.70449 3.78865 3.84318 3.91922 4.03438 4.18372 4.26321 4.28328 4.30419 4.40942 4.48455 4.50727 4.64707 4.65384 4.70015 4.74173 4.76853 4.81553 4.84725 4.88413 5.03060 5.05731 5.09743 5.11266 5.22935 5.26354 5.34509 5.42697 5.57374 5.62621 6.38675 6.46606 6.71794 6.73286 7.13138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.545 6.545 5 C -0.095 4.095 6 C -0.098 4.098 7 H 0.084 0.916 8 C -0.116 4.116 9 C 0.114 3.886 10 H 0.090 0.910 11 N -0.696 5.696 12 C 0.557 3.443 13 O -0.583 6.583 14 C -0.151 4.151 15 C -0.051 4.051 16 C -0.119 4.119 17 C -0.112 4.112 18 C 0.157 3.843 19 O -0.496 6.496 20 C -0.153 4.153 21 C -0.059 4.059 22 O -0.539 6.539 23 Si 0.740 3.260 24 C -0.068 4.068 25 C -0.147 4.147 26 H 0.057 0.943 27 H 0.128 0.872 28 H 0.058 0.942 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.418 0.582 34 H 0.167 0.833 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.412 0.588 39 H 0.127 0.873 40 H 0.385 0.615 41 H -0.290 1.290 42 H -0.291 1.291 43 H 0.129 0.871 44 H 0.104 0.896 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 -10.310 1.107 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.435 6.435 5 C -0.132 4.132 6 C -0.117 4.117 7 H 0.103 0.897 8 C -0.154 4.154 9 C 0.009 3.991 10 H 0.108 0.892 11 N -0.348 5.348 12 C 0.346 3.654 13 O -0.464 6.464 14 C -0.154 4.154 15 C -0.070 4.070 16 C -0.119 4.119 17 C -0.168 4.168 18 C 0.112 3.888 19 O -0.310 6.310 20 C -0.154 4.154 21 C -0.170 4.170 22 O -0.347 6.347 23 Si 0.647 3.353 24 C -0.087 4.087 25 C -0.186 4.186 26 H 0.076 0.924 27 H 0.146 0.854 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.257 0.743 34 H 0.184 0.816 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.272 0.728 39 H 0.145 0.855 40 H 0.235 0.765 41 H -0.218 1.218 42 H -0.218 1.218 43 H 0.147 0.853 44 H 0.123 0.877 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.426 -8.756 0.610 9.107 hybrid contribution 0.635 0.662 1.050 1.394 sum 3.061 -8.095 1.660 8.812 Atomic orbital electron populations 1.23465 0.75436 1.05425 1.02175 1.86511 1.24485 1.33509 1.83824 1.24641 0.93755 0.80775 0.71004 1.90688 1.68411 1.37575 1.46841 1.21542 0.84817 0.98364 1.08493 1.22136 0.97184 0.94552 0.97842 0.89745 1.23366 0.94622 0.97987 0.99426 1.22527 0.86738 0.99746 0.90123 0.89223 1.45732 1.36406 1.11110 1.41535 1.18477 0.82728 0.83536 0.80683 1.90794 1.54490 1.35312 1.65814 1.19801 0.99347 0.95374 1.00851 1.21386 0.92671 0.97566 0.95371 1.20461 0.98662 0.96380 0.96439 1.20774 1.00135 0.93002 1.02916 1.18448 0.90736 0.91177 0.88482 1.84625 1.19497 1.93125 1.33755 1.20480 0.98852 0.96501 0.99521 1.24797 0.94922 0.95886 1.01361 1.86575 1.33698 1.84896 1.29512 0.93945 0.83736 0.77677 0.79957 1.21116 0.95317 0.98194 0.94028 1.23620 0.97162 1.00091 0.97704 0.92383 0.85408 0.92332 0.84726 0.84622 0.89556 0.85807 0.74281 0.81552 0.89732 0.89360 0.91165 0.72782 0.85525 0.76544 1.21752 1.21790 0.85346 0.87743 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.47 10.57 -51.43 -0.54 -1.01 16 3 C 0.45 0.92 7.96 71.24 0.57 1.48 16 4 O -0.55 -5.43 15.51 21.99 0.34 -5.09 16 5 C -0.10 0.68 5.65 29.85 0.17 0.85 16 6 C -0.10 0.42 3.15 -10.27 -0.03 0.38 16 7 H 0.08 0.07 7.68 -2.39 -0.02 0.05 16 8 C -0.12 1.01 7.39 31.12 0.23 1.24 16 9 C 0.11 -0.18 4.25 45.58 0.19 0.01 16 10 H 0.09 0.43 7.46 -2.39 -0.02 0.41 16 11 N -0.70 2.15 5.31 -442.85 -2.35 -0.20 16 12 C 0.56 2.74 7.76 86.72 0.67 3.41 16 13 O -0.58 -8.56 15.94 -3.98 -0.06 -8.63 16 14 C -0.15 -0.24 5.87 -20.08 -0.12 -0.36 16 15 C -0.05 0.25 9.18 22.50 0.21 0.46 16 16 C -0.12 0.43 5.89 -19.81 -0.12 0.31 16 17 C -0.11 0.88 9.78 71.24 0.70 1.57 16 18 C 0.16 -0.04 6.66 22.63 0.15 0.11 16 19 O -0.50 0.61 11.84 -90.30 -1.07 -0.46 16 20 C -0.15 -0.25 5.27 -19.81 -0.10 -0.35 16 21 C -0.06 -0.10 2.37 71.24 0.17 0.07 16 22 O -0.54 -1.22 12.88 -148.98 -1.92 -3.14 16 23 Si 0.74 2.30 30.24 68.60 2.07 4.38 16 24 C -0.07 -0.26 8.20 22.51 0.18 -0.08 16 25 C -0.15 0.22 7.44 31.18 0.23 0.45 16 26 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 27 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 28 H 0.06 -0.02 8.13 -2.38 -0.02 -0.04 16 29 H 0.13 -1.63 7.85 -2.39 -0.02 -1.65 16 30 H 0.14 -1.60 8.14 -2.39 -0.02 -1.62 16 31 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.12 -1.84 8.08 -2.39 -0.02 -1.86 16 33 H 0.42 -4.58 6.75 -92.71 -0.63 -5.20 16 34 H 0.17 -2.11 6.39 -2.91 -0.02 -2.13 16 35 H 0.08 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.09 -0.96 8.08 -2.39 -0.02 -0.98 16 37 H 0.07 -0.39 7.52 -2.38 -0.02 -0.40 16 38 H 0.41 -3.19 9.06 -74.06 -0.67 -3.87 16 39 H 0.13 0.14 7.82 -2.39 -0.02 0.12 16 40 H 0.39 -1.08 8.70 -74.05 -0.64 -1.72 16 41 H -0.29 -2.55 6.68 99.48 0.66 -1.89 16 42 H -0.29 -2.67 7.11 99.48 0.71 -1.96 16 43 H 0.13 0.86 4.43 -2.91 -0.01 0.85 16 44 H 0.10 -0.56 7.90 -2.39 -0.02 -0.58 16 45 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 Total: 0.00 -28.10 378.16 -0.12 -28.22 By element: Atomic # 1 Polarization: -23.90 SS G_CDS: -0.89 Total: -24.79 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 4.30 Total: 10.73 kcal Atomic # 7 Polarization: 2.15 SS G_CDS: -2.35 Total: -0.20 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -3.25 Total: -18.33 kcal Atomic # 14 Polarization: 2.30 SS G_CDS: 2.07 Total: 4.38 kcal Total: -28.10 -0.12 -28.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.761 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds