Wall clock time and date at job start Sun Mar 7 2021 14:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00314 * 2 1 4 4 O 1.20823 * 120.00134 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00045 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47329 * 179.97438 * 5 3 2 7 7 H 1.08997 * 112.90473 * 43.74810 * 6 5 3 8 8 C 1.53786 * 113.61599 * 174.99977 * 6 5 3 9 9 C 1.53774 * 87.07988 * 139.98184 * 8 6 5 10 10 H 1.09000 * 113.61294 * 89.20015 * 9 8 6 11 11 N 1.46507 * 113.61551 * 220.01786 * 9 8 6 12 12 C 1.34771 * 119.99888 * 203.47284 * 11 9 8 13 13 O 1.21609 * 120.00598 * 359.97438 * 12 11 9 14 14 C 1.47388 * 119.99685 * 179.97438 * 12 11 9 15 15 C 1.36409 * 127.19055 * 179.97438 * 14 12 11 16 16 C 1.50702 * 125.80578 * 359.96014 * 15 14 12 17 17 O 1.33652 * 108.39616 * 179.97438 * 15 14 12 18 18 C 1.34213 * 110.90944 * 0.02562 * 17 15 14 19 19 C 1.50696 * 125.44073 * 179.97438 * 18 17 15 20 20 O 1.42903 * 109.47131 * 120.01975 * 19 18 17 21 21 Si 1.86305 * 109.47185 * 0.02562 * 19 18 17 22 22 C 1.34183 * 109.12308 * 0.26362 * 18 17 15 23 23 C 1.53775 * 87.17618 * 334.60971 * 9 8 6 24 24 H 1.09001 * 109.46739 * 300.00148 * 1 2 3 25 25 H 1.09004 * 109.46915 * 59.99318 * 1 2 3 26 26 H 1.08991 * 109.47505 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46930 * 59.99938 * 5 3 2 28 28 H 1.09002 * 109.47592 * 300.00188 * 5 3 2 29 29 H 1.08998 * 113.61003 * 25.43121 * 8 6 5 30 30 H 1.08993 * 113.61404 * 254.53038 * 8 6 5 31 31 H 0.97000 * 119.99263 * 23.47131 * 11 9 8 32 32 H 1.08999 * 109.47393 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.46904 * 300.00094 * 16 15 14 34 34 H 1.08992 * 109.46996 * 59.99629 * 16 15 14 35 35 H 1.08999 * 109.47358 * 240.02335 * 19 18 17 36 36 H 0.96700 * 114.00311 * 300.00591 * 20 19 18 37 37 H 1.48499 * 109.99670 * 58.67633 * 21 19 18 38 38 H 1.48497 * 110.00233 * 179.97438 * 21 19 18 39 39 H 1.07997 * 127.02182 * 179.70527 * 22 18 17 40 40 H 1.09005 * 113.61698 * 139.94219 * 23 9 8 41 41 H 1.09004 * 113.61484 * 270.84274 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0003 2.7419 -0.0011 7 1 3.4254 3.3546 0.6932 8 6 5.5211 2.9346 0.1211 9 6 5.3814 4.0666 -0.9102 10 1 5.1854 5.0417 -0.4643 11 7 6.4644 4.0993 -1.8963 12 6 6.7541 5.2466 -2.5413 13 8 6.1163 6.2547 -2.3052 14 6 7.8441 5.2795 -3.5328 15 6 8.2594 6.3520 -4.2664 16 6 7.6750 7.7399 -4.2076 17 8 9.2725 5.9628 -5.0463 18 6 9.5491 4.6628 -4.8591 19 6 10.6284 3.8879 -5.5700 20 8 11.5534 3.3706 -4.6115 21 14 11.5248 5.0139 -6.7530 22 6 8.7069 4.1618 -3.9424 23 6 4.1147 3.3521 -1.4099 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9557 0.7807 -0.8908 28 1 3.9565 0.7804 0.8891 29 1 6.0993 2.0840 -0.2398 30 1 5.8401 3.2775 1.1053 31 1 6.9729 3.2950 -2.0848 32 1 8.2070 8.3880 -4.9040 33 1 6.6204 7.7019 -4.4805 34 1 7.7745 8.1334 -3.1961 35 1 10.1791 3.0632 -6.1233 36 1 11.9920 4.0502 -4.0815 37 1 12.1148 6.1596 -6.0151 38 1 12.5923 4.2618 -7.4600 39 1 8.6716 3.1457 -3.5784 40 1 3.2999 4.0316 -1.6600 41 1 4.3078 2.6158 -2.1902 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_13308374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:25:57 Heat of formation + Delta-G solvation = -113.886752 kcal Electronic energy + Delta-G solvation = -25153.066052 eV Core-core repulsion = 21195.426164 eV Total energy + Delta-G solvation = -3957.639888 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.76560 -41.69735 -40.88902 -39.33192 -38.14508 -37.49733 -34.96266 -34.02138 -33.10588 -31.53232 -29.42290 -28.40811 -26.70335 -26.17738 -24.93083 -23.66871 -22.31076 -21.55521 -21.12991 -20.21105 -18.97674 -18.57088 -17.99977 -17.82500 -17.71928 -17.55910 -16.94080 -16.77764 -16.18077 -16.00280 -15.87416 -15.66166 -14.88075 -14.82885 -14.49714 -14.21952 -14.17956 -13.97617 -13.89120 -13.81334 -13.47703 -13.34800 -12.94469 -12.91910 -12.84590 -12.77105 -12.19771 -12.14094 -11.87865 -11.81703 -11.47947 -11.33522 -11.14566 -10.94775 -10.72632 -10.08161 -9.57360 -4.93324 0.22623 0.83098 1.18049 1.18813 1.42552 1.70474 1.77039 1.92051 2.19872 2.23635 3.17576 3.38997 3.43254 3.48139 3.70398 3.76617 3.79536 3.85071 3.90779 4.10952 4.25551 4.27514 4.29854 4.40187 4.46944 4.49677 4.58523 4.62362 4.65341 4.68994 4.73753 4.74946 4.83919 4.85474 5.01693 5.08719 5.12797 5.21994 5.27447 5.41519 5.58640 5.89095 6.34794 6.51434 6.71673 7.17728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.544 6.544 5 C -0.096 4.096 6 C -0.096 4.096 7 H 0.087 0.913 8 C -0.118 4.118 9 C 0.117 3.883 10 H 0.092 0.908 11 N -0.699 5.699 12 C 0.586 3.414 13 O -0.578 6.578 14 C -0.269 4.269 15 C 0.083 3.917 16 C -0.076 4.076 17 O -0.172 6.172 18 C -0.059 4.059 19 C -0.030 4.030 20 O -0.532 6.532 21 Si 0.767 3.233 22 C -0.144 4.144 23 C -0.147 4.147 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.415 0.585 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.159 0.841 36 H 0.390 0.610 37 H -0.296 1.296 38 H -0.282 1.282 39 H 0.181 0.819 40 H 0.048 0.952 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -5.397 -1.211 5.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.299 3.701 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.115 4.115 7 H 0.105 0.895 8 C -0.156 4.156 9 C 0.012 3.988 10 H 0.110 0.890 11 N -0.350 5.350 12 C 0.375 3.625 13 O -0.460 6.460 14 C -0.273 4.273 15 C 0.029 3.971 16 C -0.132 4.132 17 O -0.069 6.069 18 C -0.107 4.107 19 C -0.139 4.139 20 O -0.341 6.341 21 Si 0.671 3.329 22 C -0.163 4.163 23 C -0.186 4.186 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.105 0.895 31 H 0.253 0.747 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.176 0.824 36 H 0.240 0.760 37 H -0.223 1.223 38 H -0.209 1.209 39 H 0.198 0.802 40 H 0.067 0.933 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.202 -4.458 -1.709 5.258 hybrid contribution 0.004 -0.058 1.205 1.207 sum 2.206 -4.516 -0.503 5.051 Atomic orbital electron populations 1.23471 0.75372 1.05447 1.02213 1.86509 1.24545 1.33484 1.83814 1.24588 0.93662 0.80806 0.71027 1.90685 1.68370 1.37530 1.46818 1.21535 0.84970 0.98419 1.08370 1.22168 0.97024 0.94526 0.97800 0.89475 1.23353 0.94726 0.98010 0.99469 1.22477 0.86643 0.99703 0.89978 0.89001 1.45653 1.36206 1.11932 1.41186 1.17465 0.81737 0.83395 0.79875 1.90777 1.53321 1.35152 1.66724 1.21241 1.04154 0.95571 1.06351 1.23193 0.87034 0.97553 0.89282 1.20559 1.01147 0.86756 1.04758 1.83682 1.43344 1.26458 1.53434 1.22863 1.02785 0.81683 1.03378 1.24456 0.89916 1.03802 0.95769 1.86638 1.57379 1.37475 1.52578 0.93537 0.82304 0.75039 0.82016 1.22803 0.94836 0.99967 0.98735 1.23604 0.97303 1.00058 0.97595 0.92261 0.92365 0.85398 0.85003 0.84642 0.86308 0.89454 0.74746 0.88295 0.88751 0.89038 0.82389 0.75979 1.22307 1.20872 0.80194 0.93340 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.77 10.56 -51.36 -0.54 -1.31 16 3 C 0.45 1.33 7.96 71.24 0.57 1.90 16 4 O -0.54 -5.76 15.51 21.97 0.34 -5.42 16 5 C -0.10 0.55 5.65 29.85 0.17 0.72 16 6 C -0.10 0.28 3.15 -10.21 -0.03 0.25 16 7 H 0.09 0.13 7.68 -2.39 -0.02 0.12 16 8 C -0.12 0.80 7.39 31.12 0.23 1.03 16 9 C 0.12 0.00 4.21 45.51 0.19 0.19 16 10 H 0.09 0.50 7.50 -2.39 -0.02 0.49 16 11 N -0.70 0.26 5.36 -443.35 -2.38 -2.11 16 12 C 0.59 3.81 7.81 86.65 0.68 4.48 16 13 O -0.58 -7.96 15.28 -4.06 -0.06 -8.02 16 14 C -0.27 -1.04 6.31 -18.99 -0.12 -1.16 16 15 C 0.08 0.31 7.37 25.26 0.19 0.49 16 16 C -0.08 -0.08 9.14 71.24 0.65 0.58 16 17 O -0.17 -0.35 8.89 4.49 0.04 -0.31 16 18 C -0.06 0.04 6.20 24.76 0.15 0.20 16 19 C -0.03 0.12 2.97 71.23 0.21 0.33 16 20 O -0.53 1.09 12.87 -148.98 -1.92 -0.83 16 21 Si 0.77 -2.16 32.09 68.60 2.20 0.04 16 22 C -0.14 0.14 10.46 23.65 0.25 0.39 16 23 C -0.15 -0.01 7.44 31.18 0.23 0.22 16 24 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 25 H 0.06 0.02 8.13 -2.38 -0.02 0.00 16 26 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 27 H 0.13 -1.34 7.85 -2.39 -0.02 -1.36 16 28 H 0.14 -1.40 8.14 -2.39 -0.02 -1.42 16 29 H 0.12 -1.42 8.07 -2.39 -0.02 -1.44 16 30 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.42 -2.71 7.88 -92.71 -0.73 -3.45 16 32 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.09 0.19 8.08 -2.39 -0.02 0.17 16 34 H 0.09 0.21 8.08 -2.39 -0.02 0.19 16 35 H 0.16 -1.28 7.96 -2.39 -0.02 -1.30 16 36 H 0.39 -2.58 8.70 -74.06 -0.64 -3.23 16 37 H -0.30 -1.14 7.11 99.48 0.71 -0.43 16 38 H -0.28 -0.79 7.11 99.48 0.71 -0.08 16 39 H 0.18 -1.15 7.74 -2.91 -0.02 -1.18 16 40 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 41 H 0.10 -0.30 7.90 -2.38 -0.02 -0.32 16 Total: 0.00 -23.95 355.83 1.98 -21.98 By element: Atomic # 1 Polarization: -14.53 SS G_CDS: -0.27 Total: -14.80 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 4.56 Total: 10.78 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -2.38 Total: -2.11 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -2.14 Total: -15.89 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: 2.20 Total: 0.04 kcal Total: -23.95 1.98 -21.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_13308374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.908 kcal (2) G-P(sol) polarization free energy of solvation -23.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds