Wall clock time and date at job start Sun Mar 7 2021 14:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99805 * 2 1 4 4 O 1.20830 * 120.00120 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99980 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47158 * 179.97438 * 5 3 2 7 7 H 1.08997 * 112.85461 * 316.20458 * 6 5 3 8 8 C 1.53789 * 113.60943 * 87.50563 * 6 5 3 9 9 C 1.53774 * 87.07988 * 139.98177 * 8 6 5 10 10 H 1.09007 * 113.69535 * 89.12897 * 9 8 6 11 11 N 1.46500 * 113.61748 * 220.01671 * 9 8 6 12 12 C 1.34773 * 120.00442 * 252.50461 * 11 9 8 13 13 O 1.21596 * 119.99878 * 359.97438 * 12 11 9 14 14 C 1.47555 * 120.00110 * 179.97438 * 12 11 9 15 15 C 1.39830 * 120.00326 * 179.97438 * 14 12 11 16 16 C 1.36565 * 120.00220 * 180.02562 * 15 14 12 17 17 C 1.39819 * 120.00187 * 359.97438 * 16 15 14 18 18 C 1.47555 * 120.00053 * 179.97438 * 17 16 15 19 19 C 1.34980 * 125.27805 * 180.02562 * 18 17 16 20 20 C 1.37800 * 114.70563 * 179.97438 * 19 18 17 21 21 C 1.33744 * 115.07558 * 0.02562 * 20 19 18 22 22 C 1.50704 * 125.11371 * 179.97438 * 21 20 19 23 23 O 1.42901 * 109.47256 * 300.00044 * 22 21 20 24 24 Si 1.86299 * 109.46700 * 180.02562 * 22 21 20 25 25 S 1.75853 * 109.76495 * 0.02562 * 21 20 19 26 26 C 1.39827 * 119.99726 * 0.25245 * 17 16 15 27 27 C 1.36564 * 120.00497 * 359.49079 * 26 17 16 28 28 C 1.53775 * 113.61797 * 184.99880 * 6 5 3 29 29 H 1.09008 * 109.46839 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46993 * 300.00182 * 1 2 3 31 31 H 1.09003 * 109.47083 * 60.00262 * 1 2 3 32 32 H 1.09005 * 109.46784 * 60.00062 * 5 3 2 33 33 H 1.08999 * 109.47285 * 300.00008 * 5 3 2 34 34 H 1.08996 * 113.61583 * 25.43021 * 8 6 5 35 35 H 1.08996 * 113.61424 * 254.52880 * 8 6 5 36 36 H 0.97008 * 119.99760 * 72.49156 * 11 9 8 37 37 H 1.08004 * 119.99862 * 0.04222 * 15 14 12 38 38 H 1.08004 * 120.00016 * 179.97438 * 16 15 14 39 39 H 1.08008 * 122.64848 * 0.02562 * 19 18 17 40 40 H 1.07997 * 122.46036 * 180.27356 * 20 19 18 41 41 H 1.09002 * 109.46911 * 60.00319 * 22 21 20 42 42 H 0.96699 * 114.00005 * 179.97438 * 23 22 21 43 43 H 1.48492 * 110.00219 * 59.99903 * 24 22 21 44 44 H 1.48499 * 109.99758 * 181.31994 * 24 22 21 45 45 H 1.08001 * 119.99381 * 179.74157 * 26 17 16 46 46 H 1.07992 * 120.00202 * 180.27453 * 27 26 17 47 47 H 1.09003 * 113.61532 * 105.46994 * 28 6 5 48 48 H 1.09005 * 113.61255 * 334.57885 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.4251 3.3532 -0.6960 8 6 4.1153 3.3511 1.4073 9 6 5.3809 4.0677 0.9080 10 1 5.1850 5.0426 0.4614 11 7 6.4640 4.1013 1.8940 12 6 6.7739 5.2562 2.5156 13 8 6.1548 6.2706 2.2578 14 6 7.8644 5.2898 3.5091 15 6 8.1863 6.4882 4.1537 16 6 9.1959 6.5193 5.0728 17 6 9.9074 5.3529 5.3696 18 6 10.9986 5.3867 6.3623 19 6 11.7524 4.3286 6.7285 20 6 12.7139 4.6067 7.6756 21 6 12.7533 5.8787 8.0869 22 6 13.7111 6.4291 9.1120 23 8 13.5281 5.7425 10.3519 24 14 13.3834 8.2468 9.3551 25 16 11.5182 6.8119 7.2526 26 6 9.5886 4.1556 4.7216 27 6 8.5756 4.1231 3.8063 28 6 5.5208 2.9349 -0.1224 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 4.3093 2.6147 2.1871 35 1 3.2996 4.0293 1.6577 36 1 6.9579 3.2921 2.0995 37 1 7.6363 7.3891 3.9250 38 1 9.4449 7.4450 5.5704 39 1 11.6136 3.3420 6.3114 40 1 13.3888 3.8537 8.0549 41 1 14.7349 6.2872 8.7657 42 1 14.1136 6.0456 11.0594 43 1 11.9907 8.4531 9.8273 44 1 14.3422 8.8084 10.3402 45 1 10.1410 3.2555 4.9479 46 1 8.3265 3.1974 3.3091 47 1 5.8398 3.2770 -1.1070 48 1 6.0991 2.0847 0.2391 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17321982_13308390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:26:01 Heat of formation + Delta-G solvation = -64.512364 kcal Electronic energy + Delta-G solvation = -30979.699998 eV Core-core repulsion = 26479.829642 eV Total energy + Delta-G solvation = -4499.870356 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.122 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.73796 -41.27072 -40.29568 -39.37416 -38.78530 -37.53701 -37.37349 -34.94719 -33.51469 -32.33418 -31.56786 -30.49776 -28.47178 -27.29525 -26.80501 -25.20027 -24.23905 -23.80761 -23.19504 -21.92258 -21.51440 -20.66689 -20.09787 -19.03001 -18.72498 -18.50561 -18.27910 -17.83736 -17.51234 -17.08032 -16.98741 -16.29952 -16.22546 -16.05810 -15.92441 -15.61734 -15.42258 -14.97271 -14.93191 -14.55398 -14.53229 -14.43598 -14.17774 -14.06368 -13.86486 -13.63151 -13.42295 -13.36710 -13.29753 -13.05980 -12.97803 -12.84762 -12.70923 -12.37430 -12.19978 -12.15722 -11.91993 -11.75557 -11.59336 -11.45437 -11.34700 -10.88068 -10.81112 -10.52391 -10.19883 -10.04235 -9.52447 -9.00398 -5.14235 -0.86442 0.26439 0.33402 0.38970 0.75022 1.14908 1.24568 1.50457 1.60325 1.72090 1.84074 2.03395 2.13120 2.85857 3.19546 3.33548 3.37484 3.43551 3.62364 3.64308 3.68462 3.73464 3.78005 3.81554 3.85938 4.16535 4.17565 4.19856 4.24311 4.25091 4.29450 4.30212 4.41439 4.42076 4.52379 4.56536 4.60221 4.61185 4.69728 4.76429 4.88458 4.94019 4.99632 5.04301 5.09665 5.21481 5.23505 5.28249 5.31130 5.43423 5.46980 5.53214 5.72978 6.29357 6.46632 6.77684 7.21377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.102 4.102 6 C -0.099 4.099 7 H 0.108 0.892 8 C -0.147 4.147 9 C 0.124 3.876 10 H 0.119 0.881 11 N -0.717 5.717 12 C 0.560 3.440 13 O -0.533 6.533 14 C -0.137 4.137 15 C -0.049 4.049 16 C -0.120 4.120 17 C 0.015 3.985 18 C -0.151 4.151 19 C -0.118 4.118 20 C -0.105 4.105 21 C -0.173 4.173 22 C -0.034 4.034 23 O -0.532 6.532 24 Si 0.645 3.355 25 S 0.141 5.859 26 C -0.110 4.110 27 C -0.078 4.078 28 C -0.140 4.140 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.400 0.600 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.087 0.913 42 H 0.383 0.617 43 H -0.235 1.235 44 H -0.238 1.238 45 H 0.134 0.866 46 H 0.130 0.870 47 H 0.082 0.918 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.849 -4.545 -1.086 6.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.390 6.390 5 C -0.140 4.140 6 C -0.118 4.118 7 H 0.126 0.874 8 C -0.186 4.186 9 C 0.019 3.981 10 H 0.137 0.863 11 N -0.368 5.368 12 C 0.348 3.652 13 O -0.410 6.410 14 C -0.141 4.141 15 C -0.067 4.067 16 C -0.139 4.139 17 C 0.012 3.988 18 C -0.268 4.268 19 C -0.148 4.148 20 C -0.135 4.135 21 C -0.290 4.290 22 C -0.146 4.146 23 O -0.340 6.340 24 Si 0.543 3.457 25 S 0.409 5.591 26 C -0.130 4.130 27 C -0.097 4.097 28 C -0.178 4.178 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.236 0.764 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.105 0.895 42 H 0.231 0.769 43 H -0.159 1.159 44 H -0.161 1.161 45 H 0.152 0.848 46 H 0.147 0.853 47 H 0.100 0.900 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.060 -1.633 -0.980 3.604 hybrid contribution 0.887 -2.549 1.150 2.933 sum 3.946 -4.182 0.170 5.752 Atomic orbital electron populations 1.23300 0.75954 1.03915 1.02714 1.86504 1.23784 1.33555 1.84102 1.23826 0.92311 0.81391 0.72411 1.90700 1.67228 1.36302 1.44760 1.21407 0.87603 0.98889 1.06074 1.22255 0.96166 0.94157 0.99250 0.87381 1.23568 0.98413 1.00195 0.96399 1.22509 0.86431 0.99989 0.89189 0.86276 1.45891 1.36912 1.11428 1.42563 1.18256 0.82872 0.83389 0.80693 1.90812 1.52551 1.33433 1.64176 1.20020 0.98721 0.95057 1.00285 1.20952 0.95068 0.97698 0.93024 1.20981 0.96392 0.97636 0.98901 1.18290 0.92812 0.94055 0.93599 1.23067 1.02230 0.97372 1.04084 1.20358 0.96045 0.99516 0.98893 1.19970 1.00030 0.95906 0.97604 1.23826 1.02904 0.98003 1.04271 1.24011 0.98991 1.07165 0.84465 1.86604 1.64923 1.61819 1.20656 0.95278 0.82975 0.75710 0.91725 1.84114 1.28589 1.11087 1.35335 1.20865 0.98007 0.97389 0.96746 1.20945 0.94724 0.97200 0.96827 1.23432 0.95715 0.98496 1.00136 0.87931 0.91786 0.91755 0.87175 0.87437 0.89603 0.90332 0.76399 0.84066 0.85134 0.83716 0.83777 0.89494 0.76858 1.15909 1.16101 0.84816 0.85259 0.89960 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.41 10.57 -39.26 -0.41 -0.82 16 3 C 0.46 0.60 7.96 36.01 0.29 0.88 16 4 O -0.50 -2.25 15.51 -18.75 -0.29 -2.54 16 5 C -0.10 0.24 5.65 -27.88 -0.16 0.08 16 6 C -0.10 0.16 3.15 -89.81 -0.28 -0.13 16 7 H 0.11 -0.01 7.68 -51.93 -0.40 -0.41 16 8 C -0.15 0.07 7.43 -25.92 -0.19 -0.12 16 9 C 0.12 -0.07 4.24 -67.12 -0.28 -0.35 16 10 H 0.12 0.18 7.46 -51.93 -0.39 -0.21 16 11 N -0.72 0.51 5.30 -54.05 -0.29 0.22 16 12 C 0.56 1.39 7.76 -12.46 -0.10 1.29 16 13 O -0.53 -3.41 15.93 5.28 0.08 -3.33 16 14 C -0.14 -0.16 5.88 -104.91 -0.62 -0.77 16 15 C -0.05 -0.08 9.53 -39.59 -0.38 -0.45 16 16 C -0.12 -0.10 9.54 -39.59 -0.38 -0.48 16 17 C 0.01 0.01 5.88 -104.91 -0.62 -0.61 16 18 C -0.15 -0.14 6.37 -36.94 -0.24 -0.37 16 19 C -0.12 -0.03 9.64 -40.90 -0.39 -0.42 16 20 C -0.10 -0.08 10.00 -41.32 -0.41 -0.49 16 21 C -0.17 -0.17 5.76 -35.88 -0.21 -0.38 16 22 C -0.03 0.01 2.95 36.01 0.11 0.12 16 23 O -0.53 -0.34 12.83 -35.23 -0.45 -0.79 16 24 Si 0.64 -0.51 30.96 -169.99 -5.26 -5.77 16 25 S 0.14 0.10 19.46 -107.50 -2.09 -1.99 16 26 C -0.11 0.09 9.48 -39.59 -0.38 -0.28 16 27 C -0.08 0.10 9.48 -39.59 -0.38 -0.28 16 28 C -0.14 0.43 7.39 -25.92 -0.19 0.23 16 29 H 0.10 -0.30 8.14 -51.92 -0.42 -0.72 16 30 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 31 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 32 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 33 H 0.11 -0.42 7.84 -51.93 -0.41 -0.83 16 34 H 0.09 -0.13 7.90 -51.93 -0.41 -0.54 16 35 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.40 -1.46 6.74 -40.82 -0.28 -1.73 16 37 H 0.14 0.24 7.64 -52.48 -0.40 -0.17 16 38 H 0.13 -0.04 7.26 -52.48 -0.38 -0.42 16 39 H 0.15 -0.29 6.88 -52.48 -0.36 -0.65 16 40 H 0.14 -0.05 8.06 -52.49 -0.42 -0.47 16 41 H 0.09 -0.21 7.96 -51.93 -0.41 -0.62 16 42 H 0.38 -1.34 8.74 45.56 0.40 -0.95 16 43 H -0.24 -0.55 7.11 56.52 0.40 -0.15 16 44 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 45 H 0.13 -0.40 6.74 -52.49 -0.35 -0.75 16 46 H 0.13 -0.56 6.38 -52.49 -0.34 -0.90 16 47 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 48 H 0.09 -0.43 8.08 -51.93 -0.42 -0.85 16 LS Contribution 417.61 15.07 6.29 6.29 Total: 0.00 -10.55 417.61 -12.46 -23.00 By element: Atomic # 1 Polarization: -6.49 SS G_CDS: -6.30 Total: -12.79 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.74 Total: -1.48 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -0.29 Total: 0.22 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -1.07 Total: -7.49 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: -5.26 Total: -5.77 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.09 Total: -1.99 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -10.55 -12.46 -23.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_13308390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.510 kcal (2) G-P(sol) polarization free energy of solvation -10.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds