Wall clock time and date at job start Sun Mar 7 2021 14:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47248 * 180.02562 * 5 3 2 7 7 H 1.08996 * 112.84904 * 316.19618 * 6 5 3 8 8 C 1.53789 * 113.61438 * 87.50222 * 6 5 3 9 9 C 1.53782 * 87.08138 * 139.98021 * 8 6 5 10 10 H 1.09005 * 113.61016 * 89.11568 * 9 8 6 11 11 N 1.46488 * 113.61385 * 220.01540 * 9 8 6 12 12 C 1.34779 * 120.00628 * 252.49876 * 11 9 8 13 13 O 1.21593 * 119.99255 * 359.97438 * 12 11 9 14 14 C 1.47528 * 120.00697 * 180.02562 * 12 11 9 15 15 C 1.40136 * 120.19709 * 179.72232 * 14 12 11 16 16 O 1.35655 * 120.14476 * 359.97438 * 15 14 12 17 17 C 1.38708 * 119.70268 * 179.74444 * 15 14 12 18 18 C 1.38048 * 120.08108 * 0.53408 * 17 15 14 19 19 C 1.50707 * 119.80450 * 179.76166 * 18 17 15 20 20 O 1.42904 * 109.47045 * 64.97590 * 19 18 17 21 21 Si 1.86304 * 109.47223 * 184.97692 * 19 18 17 22 22 C 1.38543 * 120.39629 * 359.74183 * 18 17 15 23 23 C 1.37786 * 120.29667 * 359.97438 * 22 18 17 24 24 C 1.53778 * 87.08212 * 334.57025 * 9 8 6 25 25 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 26 26 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 27 27 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47488 * 300.00148 * 5 3 2 29 29 H 1.09001 * 109.47517 * 59.99934 * 5 3 2 30 30 H 1.08999 * 113.61224 * 254.53205 * 8 6 5 31 31 H 1.09003 * 113.61275 * 25.43293 * 8 6 5 32 32 H 0.97008 * 119.99729 * 72.50274 * 11 9 8 33 33 H 0.96706 * 113.99791 * 89.99930 * 16 15 14 34 34 H 1.08002 * 119.95926 * 180.24998 * 17 15 14 35 35 H 1.09002 * 109.46915 * 304.97683 * 19 18 17 36 36 H 0.96694 * 113.99625 * 179.97438 * 20 19 18 37 37 H 1.48501 * 109.99684 * 178.68229 * 21 19 18 38 38 H 1.48495 * 110.00187 * 300.00140 * 21 19 18 39 39 H 1.07999 * 119.85681 * 180.02562 * 22 18 17 40 40 H 1.08008 * 120.04744 * 180.02562 * 23 22 18 41 41 H 1.09007 * 113.60786 * 270.88353 * 24 9 8 42 42 H 1.08996 * 113.69662 * 139.99496 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.4247 3.3540 -0.6944 8 6 4.1165 3.3494 1.4083 9 6 5.3818 4.0666 0.9089 10 1 5.1840 5.0417 0.4636 11 7 6.4655 4.0989 1.8940 12 6 6.7761 5.2531 2.5168 13 8 6.1570 6.2677 2.2606 14 6 7.8678 5.2857 3.5086 15 6 8.1979 6.4849 4.1542 16 8 7.5151 7.6220 3.8699 17 6 9.2227 6.5027 5.0888 18 6 9.9207 5.3460 5.3725 19 6 11.0366 5.3737 6.3851 20 8 10.5015 5.6748 7.6755 21 14 11.8735 3.7099 6.4327 22 6 9.6013 4.1596 4.7322 23 6 8.5825 4.1224 3.8053 24 6 5.5208 2.9350 -0.1231 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9565 0.7806 0.8892 29 1 3.9557 0.7810 -0.8908 30 1 3.3009 4.0272 1.6602 31 1 4.3112 2.6120 2.1871 32 1 6.9597 3.2894 2.0981 33 1 6.7393 7.7653 4.4292 34 1 9.4779 7.4237 5.5919 35 1 11.7622 6.1375 6.1053 36 1 11.1648 5.7087 8.3781 37 1 12.9961 3.7337 7.4045 38 1 10.8948 2.6597 6.8128 39 1 10.1529 3.2597 4.9610 40 1 8.3366 3.1953 3.3088 41 1 6.0994 2.0843 0.2371 42 1 5.8392 3.2769 -1.1078 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:26:04 Heat of formation + Delta-G solvation = -139.435909 kcal Electronic energy + Delta-G solvation = -26411.745936 eV Core-core repulsion = 22324.772013 eV Total energy + Delta-G solvation = -4086.973923 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83547 -41.49214 -40.44127 -39.19283 -38.36478 -37.48393 -37.29127 -34.91764 -32.91828 -31.37401 -31.10733 -28.47070 -27.53227 -26.67449 -24.79237 -23.84588 -23.14972 -21.89966 -21.51804 -20.59646 -19.28268 -18.69402 -18.60225 -18.48555 -17.94204 -17.56944 -17.43661 -16.64849 -16.59992 -16.32397 -16.02678 -15.89735 -15.55390 -15.38945 -14.82072 -14.65926 -14.45926 -14.07506 -13.97852 -13.89279 -13.46099 -13.34600 -13.30852 -12.95107 -12.91486 -12.78181 -12.53742 -12.18379 -12.07746 -11.85817 -11.80570 -11.61789 -11.46196 -11.31264 -10.86348 -10.55859 -10.18883 -9.96412 -9.76394 -4.89113 -0.40842 0.15736 1.19199 1.28361 1.63994 1.70351 1.77791 1.97524 2.11399 2.54546 3.14076 3.27772 3.45086 3.50759 3.60345 3.72892 3.78807 3.81938 3.85846 3.92224 4.11767 4.25969 4.27114 4.27657 4.30235 4.33890 4.49250 4.61580 4.65484 4.69280 4.75855 4.77233 4.81462 4.88478 5.01805 5.04356 5.11944 5.13989 5.26896 5.28256 5.42473 5.58695 5.61574 6.51424 6.54970 6.68551 6.72719 7.19820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.098 4.098 7 H 0.084 0.916 8 C -0.147 4.147 9 C 0.115 3.885 10 H 0.087 0.913 11 N -0.699 5.699 12 C 0.555 3.445 13 O -0.569 6.569 14 C -0.181 4.181 15 C 0.149 3.851 16 O -0.498 6.498 17 C -0.141 4.141 18 C -0.035 4.035 19 C -0.100 4.100 20 O -0.558 6.558 21 Si 0.779 3.221 22 C -0.134 4.134 23 C -0.051 4.051 24 C -0.116 4.116 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.417 0.583 33 H 0.405 0.595 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.397 0.603 37 H -0.290 1.290 38 H -0.285 1.285 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.125 0.875 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -9.320 -0.284 11.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.117 4.117 7 H 0.102 0.898 8 C -0.186 4.186 9 C 0.010 3.990 10 H 0.105 0.895 11 N -0.351 5.351 12 C 0.343 3.657 13 O -0.448 6.448 14 C -0.184 4.184 15 C 0.103 3.897 16 O -0.311 6.311 17 C -0.160 4.160 18 C -0.036 4.036 19 C -0.207 4.207 20 O -0.369 6.369 21 Si 0.683 3.317 22 C -0.151 4.151 23 C -0.069 4.069 24 C -0.154 4.154 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.256 0.744 33 H 0.265 0.735 34 H 0.152 0.848 35 H 0.113 0.887 36 H 0.248 0.752 37 H -0.218 1.218 38 H -0.212 1.212 39 H 0.179 0.821 40 H 0.192 0.808 41 H 0.143 0.857 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.411 -8.899 -0.760 10.443 hybrid contribution -0.977 1.124 1.711 2.268 sum 4.434 -7.775 0.951 9.001 Atomic orbital electron populations 1.23465 0.75449 1.05432 1.02160 1.86510 1.24475 1.33499 1.83824 1.24650 0.93766 0.80771 0.70988 1.90688 1.68420 1.37590 1.46861 1.21547 0.84789 0.98349 1.08520 1.22140 0.97251 0.94563 0.97723 0.89768 1.23594 0.97211 1.00077 0.97732 1.22454 0.86709 0.99638 0.90155 0.89463 1.45735 1.36515 1.11157 1.41732 1.18377 0.82767 0.83624 0.80936 1.90810 1.53861 1.34913 1.65245 1.20467 1.00466 0.95129 1.02367 1.18773 0.92931 0.85051 0.92933 1.84710 1.44857 1.38691 1.62798 1.21346 0.97177 0.99865 0.97621 1.19617 0.95516 0.93215 0.95245 1.25262 0.97942 1.14030 0.83482 1.86538 1.39570 1.92997 1.17770 0.93961 0.76342 0.72650 0.88753 1.21241 0.98571 0.97653 0.97643 1.21499 0.92822 0.97168 0.95395 1.23369 0.94556 0.98016 0.99420 0.92315 0.92432 0.85383 0.84752 0.84529 0.93696 0.87822 0.74350 0.73510 0.84802 0.88681 0.75223 1.21773 1.21188 0.82133 0.80845 0.85718 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.64 10.57 -51.42 -0.54 -1.19 16 3 C 0.45 1.18 7.96 71.24 0.57 1.74 16 4 O -0.55 -5.78 15.51 21.98 0.34 -5.44 16 5 C -0.10 0.62 5.65 29.85 0.17 0.79 16 6 C -0.10 0.33 3.15 -10.26 -0.03 0.30 16 7 H 0.08 0.13 7.68 -2.39 -0.02 0.12 16 8 C -0.15 0.07 7.43 31.12 0.23 0.30 16 9 C 0.12 -0.05 4.24 45.52 0.19 0.14 16 10 H 0.09 0.55 7.47 -2.38 -0.02 0.53 16 11 N -0.70 1.25 5.30 -443.22 -2.35 -1.10 16 12 C 0.55 3.70 7.76 86.69 0.67 4.38 16 13 O -0.57 -9.22 14.76 16.91 0.25 -8.97 16 14 C -0.18 -0.65 5.89 -20.01 -0.12 -0.76 16 15 C 0.15 1.03 6.72 22.84 0.15 1.18 16 16 O -0.50 -4.91 11.58 -68.79 -0.80 -5.71 16 17 C -0.14 -0.58 9.60 22.34 0.21 -0.36 16 18 C -0.04 -0.01 5.39 -19.83 -0.11 -0.11 16 19 C -0.10 0.29 2.78 71.24 0.20 0.49 16 20 O -0.56 -0.18 12.81 -148.98 -1.91 -2.08 16 21 Si 0.78 -4.66 29.83 68.60 2.05 -2.61 16 22 C -0.13 0.52 8.64 22.24 0.19 0.71 16 23 C -0.05 0.21 9.54 22.52 0.21 0.43 16 24 C -0.12 0.91 7.39 31.12 0.23 1.14 16 25 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 26 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 27 H 0.13 -0.85 8.14 -2.38 -0.02 -0.86 16 28 H 0.13 -1.54 7.84 -2.38 -0.02 -1.56 16 29 H 0.14 -1.55 8.14 -2.39 -0.02 -1.57 16 30 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.10 -0.45 7.90 -2.39 -0.02 -0.47 16 32 H 0.42 -4.15 6.76 -92.70 -0.63 -4.78 16 33 H 0.41 1.42 9.06 -74.05 -0.67 0.75 16 34 H 0.13 0.51 8.06 -2.91 -0.02 0.49 16 35 H 0.10 -0.57 7.96 -2.39 -0.02 -0.59 16 36 H 0.40 -3.01 8.74 -74.06 -0.65 -3.65 16 37 H -0.29 0.25 7.11 99.48 0.71 0.95 16 38 H -0.28 0.15 7.04 99.48 0.70 0.85 16 39 H 0.16 -1.48 4.83 -2.91 -0.01 -1.50 16 40 H 0.17 -2.27 6.40 -2.91 -0.02 -2.28 16 41 H 0.12 -1.77 8.08 -2.38 -0.02 -1.78 16 42 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 Total: 0.00 -31.55 356.81 0.19 -31.36 By element: Atomic # 1 Polarization: -14.98 SS G_CDS: -0.82 Total: -15.80 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 3.98 Total: 11.54 kcal Atomic # 7 Polarization: 1.25 SS G_CDS: -2.35 Total: -1.10 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -2.66 Total: -23.39 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: 2.05 Total: -2.61 kcal Total: -31.55 0.19 -31.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.073 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds