Wall clock time and date at job start Sun Mar 7 2021 14:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99656 * 2 1 4 4 O 1.20822 * 120.00735 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99645 * 179.97438 * 3 2 1 6 6 C 1.53008 * 109.47096 * 180.02562 * 5 3 2 7 7 H 1.08993 * 112.85100 * 43.80412 * 6 5 3 8 8 C 1.53783 * 113.61297 * 174.99959 * 6 5 3 9 9 C 1.53776 * 87.07857 * 139.98080 * 8 6 5 10 10 H 1.09003 * 113.61605 * 89.19956 * 9 8 6 11 11 N 1.46505 * 113.61777 * 220.01834 * 9 8 6 12 12 C 1.34770 * 120.00444 * 205.00306 * 11 9 8 13 13 O 1.21598 * 120.00322 * 359.97438 * 12 11 9 14 14 C 1.47522 * 120.00215 * 179.97438 * 12 11 9 15 15 C 1.39773 * 120.06904 * 179.97438 * 14 12 11 16 16 C 1.37629 * 119.92914 * 180.02562 * 15 14 12 17 17 C 1.50697 * 119.96465 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47290 * 104.97836 * 17 16 15 19 19 Si 1.86298 * 109.47388 * 344.97454 * 17 16 15 20 20 C 1.39203 * 120.06996 * 359.97387 * 16 15 14 21 21 N 1.39043 * 119.93121 * 180.02562 * 20 16 15 22 22 C 1.46901 * 110.99815 * 240.00456 * 21 20 16 23 23 C 1.46898 * 110.99710 * 116.04837 * 21 20 16 24 24 C 1.39238 * 120.13433 * 0.30025 * 20 16 15 25 25 C 1.37582 * 120.07193 * 359.44355 * 24 20 16 26 26 C 1.53777 * 113.61264 * 272.49679 * 6 5 3 27 27 H 1.09000 * 109.47053 * 59.99958 * 1 2 3 28 28 H 1.09000 * 109.46991 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47360 * 300.00129 * 1 2 3 30 30 H 1.08996 * 109.47297 * 60.00386 * 5 3 2 31 31 H 1.09003 * 109.47509 * 299.99720 * 5 3 2 32 32 H 1.08998 * 113.61702 * 25.43111 * 8 6 5 33 33 H 1.08999 * 113.61123 * 254.52523 * 8 6 5 34 34 H 0.97006 * 119.99120 * 24.99388 * 11 9 8 35 35 H 1.08000 * 120.03508 * 359.97438 * 15 14 12 36 36 H 1.08998 * 109.47004 * 224.97346 * 17 16 15 37 37 H 0.96699 * 114.00359 * 59.99790 * 18 17 16 38 38 H 1.48504 * 109.99992 * 300.00460 * 19 17 16 39 39 H 1.48507 * 109.99852 * 61.32086 * 19 17 16 40 40 H 1.09002 * 109.47401 * 59.99935 * 22 21 20 41 41 H 1.09001 * 109.46874 * 299.99948 * 22 21 20 42 42 H 1.09004 * 109.46970 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.46770 * 179.97438 * 23 21 20 44 44 H 1.09001 * 109.47456 * 299.99877 * 23 21 20 45 45 H 1.09000 * 109.46814 * 60.00182 * 23 21 20 46 46 H 1.08002 * 119.96411 * 179.72290 * 24 20 16 47 47 H 1.08002 * 120.03967 * 180.27141 * 25 24 20 48 48 H 1.09000 * 113.61829 * 105.46926 * 26 6 5 49 49 H 1.09001 * 113.61561 * 334.56833 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7422 0.0011 7 1 3.4247 3.3534 0.6963 8 6 5.5208 2.9348 0.1245 9 6 5.3817 4.0674 -0.9064 10 1 5.1854 5.0423 -0.4602 11 7 6.4655 4.1006 -1.8916 12 6 6.7760 5.2553 -2.5133 13 8 6.1563 6.2696 -2.2569 14 6 7.8676 5.2888 -3.5050 15 6 8.1905 6.4855 -4.1510 16 6 9.2091 6.5133 -5.0761 17 6 9.5582 7.8033 -5.7726 18 8 10.7699 8.3273 -5.2255 19 14 8.1819 9.0344 -5.5261 20 6 9.9179 5.3515 -5.3682 21 7 10.9469 5.3830 -6.3029 22 6 10.6716 4.4693 -7.4198 23 6 12.2381 5.0729 -5.6749 24 6 9.5949 4.1566 -4.7305 25 6 8.5812 4.1234 -3.8010 26 6 4.1164 3.3506 -1.4064 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9564 0.7807 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 6.0994 2.0845 -0.2363 33 1 5.8390 3.2774 1.1092 34 1 6.9596 3.2913 -2.0964 35 1 7.6406 7.3872 -3.9251 36 1 9.6919 7.6162 -6.8381 37 1 11.5307 7.7379 -5.3184 38 1 6.9162 8.5012 -6.0909 39 1 8.0110 9.3222 -4.0793 40 1 9.7443 4.7646 -7.9107 41 1 10.5743 3.4518 -7.0413 42 1 11.4923 4.5133 -8.1359 43 1 13.0253 5.1040 -6.4283 44 1 12.4497 5.8070 -4.8974 45 1 12.1975 4.0772 -5.2333 46 1 10.1437 3.2558 -4.9626 47 1 8.3340 3.1972 -3.3034 48 1 3.3009 4.0287 -1.6578 49 1 4.3111 2.6139 -2.1858 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_13422196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:26:09 Heat of formation + Delta-G solvation = -85.219194 kcal Electronic energy + Delta-G solvation = -30571.203754 eV Core-core repulsion = 26273.224268 eV Total energy + Delta-G solvation = -4297.979486 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.177 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.98511 -41.62163 -40.86365 -39.54335 -37.72298 -37.54258 -37.36818 -35.12737 -32.94006 -31.85837 -31.09470 -28.57536 -28.46338 -26.96522 -26.76477 -26.51171 -24.52802 -23.29670 -22.98115 -21.84953 -21.44348 -20.55115 -19.19165 -18.60565 -18.24443 -17.92019 -17.80488 -17.60057 -17.38989 -16.71432 -16.47794 -16.22149 -16.16350 -15.97179 -15.78247 -15.25212 -15.09089 -14.91348 -14.69547 -14.52875 -14.11941 -14.01474 -13.89482 -13.60651 -13.52503 -13.42789 -13.18619 -13.07479 -12.96259 -12.85592 -12.74672 -12.65841 -12.38192 -12.23873 -11.92651 -11.85055 -11.53846 -11.44675 -11.39765 -11.27234 -11.01045 -10.31757 -10.23264 -9.88484 -9.63815 -4.95313 -0.53925 0.00831 1.15039 1.29139 1.47807 1.56339 1.72360 1.89808 1.96204 2.48125 2.67956 3.35127 3.40705 3.43969 3.49449 3.55646 3.70192 3.75597 3.83396 3.86409 3.97271 4.03911 4.11065 4.20921 4.24082 4.25565 4.36453 4.38285 4.42305 4.43553 4.56968 4.59120 4.60010 4.65078 4.66468 4.68677 4.74636 4.80385 4.89709 4.94049 4.98596 4.98908 5.00992 5.03369 5.10829 5.15989 5.36885 5.40571 5.50280 5.76506 6.14701 6.33323 6.64944 6.68657 6.99341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.096 4.096 7 H 0.085 0.915 8 C -0.114 4.114 9 C 0.111 3.889 10 H 0.087 0.913 11 N -0.693 5.693 12 C 0.553 3.447 13 O -0.589 6.589 14 C -0.150 4.150 15 C -0.084 4.084 16 C -0.113 4.113 17 C -0.061 4.061 18 O -0.544 6.544 19 Si 0.794 3.206 20 C 0.133 3.867 21 N -0.524 5.524 22 C 0.024 3.976 23 C 0.022 3.978 24 C -0.147 4.147 25 C -0.055 4.055 26 C -0.148 4.148 27 H 0.057 0.943 28 H 0.129 0.871 29 H 0.058 0.942 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.419 0.581 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.374 0.626 38 H -0.277 1.277 39 H -0.303 1.303 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.161 0.839 47 H 0.169 0.831 48 H 0.044 0.956 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.512 -10.516 -2.663 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.115 4.115 7 H 0.103 0.897 8 C -0.152 4.152 9 C 0.006 3.994 10 H 0.105 0.895 11 N -0.344 5.344 12 C 0.342 3.658 13 O -0.470 6.470 14 C -0.153 4.153 15 C -0.103 4.103 16 C -0.115 4.115 17 C -0.172 4.172 18 O -0.351 6.351 19 Si 0.700 3.300 20 C 0.038 3.962 21 N -0.246 5.246 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.167 4.167 25 C -0.074 4.074 26 C -0.186 4.186 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.259 0.741 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.224 0.776 38 H -0.203 1.203 39 H -0.232 1.232 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.178 0.822 47 H 0.186 0.814 48 H 0.063 0.937 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.751 -8.427 -2.195 9.920 hybrid contribution -0.220 -1.926 0.589 2.026 sum 4.531 -10.353 -1.607 11.415 Atomic orbital electron populations 1.23472 0.75392 1.05477 1.02172 1.86508 1.24518 1.33425 1.83804 1.24624 0.93732 0.80800 0.71010 1.90691 1.68421 1.37602 1.46854 1.21538 0.84883 0.98175 1.08578 1.22131 0.97137 0.94715 0.97558 0.89665 1.23368 0.94719 0.97797 0.99324 1.22555 0.86775 0.99851 0.90244 0.89470 1.45715 1.36376 1.10917 1.41427 1.18541 0.82776 0.83631 0.80845 1.90794 1.54599 1.35608 1.66026 1.19906 0.99360 0.95508 1.00549 1.21062 0.96520 0.97516 0.95198 1.20321 0.96263 0.97015 0.97872 1.25003 0.95308 0.97049 0.99793 1.86689 1.18446 1.46917 1.83019 0.92884 0.72480 0.85769 0.78885 1.18936 0.92805 0.91705 0.92728 1.59437 1.01590 1.54427 1.09105 1.22557 1.03277 0.93728 0.92593 1.22613 0.88910 1.00560 1.00263 1.21935 0.98651 0.98995 0.97126 1.21496 0.93164 0.96979 0.95770 1.23597 0.97019 1.00071 0.97935 0.92438 0.85315 0.92299 0.84720 0.84442 0.85642 0.89399 0.74144 0.87415 0.88456 0.77635 1.20324 1.23186 0.91712 0.93637 0.89031 0.88844 0.91134 0.93792 0.82155 0.81390 0.93674 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -0.69 10.57 -51.39 -0.54 -1.24 16 3 C 0.45 1.29 7.96 71.24 0.57 1.86 16 4 O -0.55 -5.97 15.51 21.97 0.34 -5.63 16 5 C -0.09 0.60 5.65 29.85 0.17 0.77 16 6 C -0.10 0.28 3.15 -10.27 -0.03 0.25 16 7 H 0.08 0.18 7.68 -2.39 -0.02 0.16 16 8 C -0.11 0.82 7.39 31.12 0.23 1.05 16 9 C 0.11 0.09 4.24 45.52 0.19 0.28 16 10 H 0.09 0.67 7.46 -2.39 -0.02 0.65 16 11 N -0.69 0.18 5.30 -443.21 -2.35 -2.17 16 12 C 0.55 5.10 7.76 86.69 0.67 5.78 16 13 O -0.59 -11.77 15.94 -4.03 -0.06 -11.83 16 14 C -0.15 -0.90 5.88 -20.08 -0.12 -1.01 16 15 C -0.08 -0.87 8.19 22.50 0.18 -0.69 16 16 C -0.11 -0.65 5.28 -19.78 -0.10 -0.76 16 17 C -0.06 -0.28 2.29 71.24 0.16 -0.12 16 18 O -0.54 -2.83 12.65 -148.98 -1.89 -4.72 16 19 Si 0.79 5.35 30.40 68.60 2.09 7.44 16 20 C 0.13 0.01 4.66 38.47 0.18 0.19 16 21 N -0.52 1.89 3.70 -745.08 -2.76 -0.87 16 22 C 0.02 -0.15 9.33 127.69 1.19 1.04 16 23 C 0.02 -0.16 9.09 127.69 1.16 1.01 16 24 C -0.15 0.56 8.53 22.36 0.19 0.75 16 25 C -0.06 0.17 9.53 22.50 0.21 0.38 16 26 C -0.15 -0.07 7.43 31.12 0.23 0.16 16 27 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 28 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 30 H 0.13 -1.52 7.84 -2.39 -0.02 -1.54 16 31 H 0.14 -1.53 8.14 -2.39 -0.02 -1.55 16 32 H 0.13 -1.71 8.08 -2.39 -0.02 -1.73 16 33 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.42 -3.69 6.75 -92.70 -0.63 -4.32 16 35 H 0.11 1.73 4.50 -2.91 -0.01 1.72 16 36 H 0.10 0.14 7.78 -2.39 -0.02 0.12 16 37 H 0.37 0.10 7.47 -74.06 -0.55 -0.45 16 38 H -0.28 -2.99 7.11 99.48 0.71 -2.28 16 39 H -0.30 -4.73 6.81 99.48 0.68 -4.05 16 40 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.05 -0.37 7.08 -2.39 -0.02 -0.39 16 42 H 0.09 -0.76 8.12 -2.38 -0.02 -0.78 16 43 H 0.09 -0.86 8.12 -2.38 -0.02 -0.88 16 44 H 0.07 -0.43 7.41 -2.39 -0.02 -0.44 16 45 H 0.04 -0.37 7.33 -2.39 -0.02 -0.38 16 46 H 0.16 -1.51 6.99 -2.91 -0.02 -1.53 16 47 H 0.17 -1.96 6.39 -2.91 -0.02 -1.98 16 48 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.10 -0.38 7.90 -2.39 -0.02 -0.40 16 Total: 0.00 -29.41 398.77 0.93 -28.48 By element: Atomic # 1 Polarization: -21.37 SS G_CDS: -0.18 Total: -21.56 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.29 Total: 12.11 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -5.11 Total: -3.05 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -2.15 Total: -23.42 kcal Atomic # 14 Polarization: 5.35 SS G_CDS: 2.09 Total: 7.44 kcal Total: -29.41 0.93 -28.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_13422196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.743 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds