Wall clock time and date at job start Sun Mar 7 2021 14:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00218 * 2 1 4 4 O 1.20827 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00085 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46994 * 179.97438 * 5 3 2 7 7 H 1.08999 * 112.84920 * 316.19617 * 6 5 3 8 8 C 1.53958 * 113.66573 * 87.44002 * 6 5 3 9 9 C 1.53781 * 87.01946 * 139.93167 * 8 6 5 10 10 H 1.08997 * 113.61342 * 89.22850 * 9 8 6 11 11 N 1.46500 * 113.61510 * 220.05095 * 9 8 6 12 12 C 1.34771 * 119.99658 * 254.13547 * 11 9 8 13 13 O 1.21693 * 120.00188 * 0.02562 * 12 11 9 14 14 C 1.46680 * 119.99875 * 179.97438 * 12 11 9 15 15 C 1.37876 * 126.23468 * 179.71008 * 14 12 11 16 16 C 1.50704 * 126.45452 * 0.24762 * 15 14 12 17 17 C 1.39831 * 107.08651 * 180.26342 * 15 14 12 18 18 C 1.35452 * 107.86497 * 0.02562 * 17 15 14 19 19 C 1.50706 * 125.56404 * 179.97438 * 18 17 15 20 20 O 1.42897 * 109.46921 * 119.99973 * 19 18 17 21 21 Si 1.86298 * 109.47171 * 359.97438 * 19 18 17 22 22 N 1.35531 * 108.87411 * 359.97438 * 18 17 15 23 23 C 1.53781 * 113.61524 * 185.00028 * 6 5 3 24 24 H 1.09000 * 109.46790 * 60.00543 * 1 2 3 25 25 H 1.09000 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47100 * 299.99980 * 1 2 3 27 27 H 1.08996 * 109.46481 * 60.00169 * 5 3 2 28 28 H 1.08994 * 109.46711 * 299.99957 * 5 3 2 29 29 H 1.08995 * 113.61103 * 25.41269 * 8 6 5 30 30 H 1.08995 * 113.66856 * 254.45839 * 8 6 5 31 31 H 0.97000 * 120.00292 * 74.13322 * 11 9 8 32 32 H 1.09002 * 109.47116 * 89.99565 * 16 15 14 33 33 H 1.09001 * 109.46889 * 209.99704 * 16 15 14 34 34 H 1.08999 * 109.46738 * 329.99523 * 16 15 14 35 35 H 1.08003 * 126.06753 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.46756 * 239.99844 * 19 18 17 37 37 H 0.96698 * 114.00216 * 179.97438 * 20 19 18 38 38 H 1.48500 * 110.00062 * 59.99851 * 21 19 18 39 39 H 1.48497 * 109.99938 * 181.31729 * 21 19 18 40 40 H 0.97004 * 125.68166 * 180.02562 * 22 18 17 41 41 H 1.08993 * 113.61273 * 105.46942 * 23 6 5 42 42 H 1.09003 * 113.68893 * 334.57962 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7419 -0.0002 7 1 3.4254 3.3529 -0.6961 8 6 4.1145 3.3533 1.4082 9 6 5.3812 4.0676 0.9079 10 1 5.1852 5.0423 0.4612 11 7 6.4642 4.1010 1.8940 12 6 6.7538 5.2489 2.5380 13 8 6.1155 6.2575 2.3008 14 6 7.8378 5.2823 3.5256 15 6 8.2452 6.3813 4.2516 16 6 7.6584 7.7677 4.1828 17 6 9.3057 5.9673 5.0635 18 6 9.5232 4.6519 4.8243 19 6 10.5777 3.8031 5.4867 20 8 9.9520 2.7235 6.1830 21 14 11.5448 4.8431 6.6925 22 7 8.6377 4.2236 3.8919 23 6 5.5210 2.9346 -0.1225 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9564 0.7804 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 4.3075 2.6178 2.1890 30 1 3.2997 4.0330 1.6575 31 1 6.9727 3.2970 2.0833 32 1 6.8515 7.8573 4.9101 33 1 8.4327 8.5015 4.4070 34 1 7.2668 7.9471 3.1815 35 1 9.8546 6.5866 5.7575 36 1 11.2521 3.4045 4.7288 37 1 10.5721 2.1343 6.6340 38 1 10.6369 5.3931 7.7310 39 1 12.6085 4.0255 7.3291 40 1 8.5775 3.3212 3.5411 41 1 5.8400 3.2767 -1.1070 42 1 6.1006 2.0850 0.2387 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17321982_13940406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:26:23 Heat of formation + Delta-G solvation = -86.785672 kcal Electronic energy + Delta-G solvation = -25084.605232 eV Core-core repulsion = 21225.859197 eV Total energy + Delta-G solvation = -3858.746035 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.52537 -41.63634 -40.69920 -39.17555 -37.92073 -37.39482 -34.98486 -33.39070 -32.08150 -31.27781 -28.51651 -28.10815 -26.99349 -26.83997 -24.54911 -22.50275 -21.74932 -21.37644 -20.97727 -20.11962 -19.30108 -18.73045 -18.52929 -17.85542 -17.52950 -17.00161 -16.84376 -16.35804 -16.19924 -15.97031 -15.21705 -15.08866 -14.82248 -14.62795 -14.48558 -14.20028 -14.01652 -13.80723 -13.66582 -13.46701 -13.43359 -13.24140 -13.06436 -12.98924 -12.86304 -12.40018 -12.20710 -11.99239 -11.95001 -11.77067 -11.47798 -11.36885 -10.93132 -10.70289 -10.11476 -9.75515 -9.08605 -4.99764 0.41181 1.10137 1.22824 1.53580 1.59332 1.70127 1.88804 2.07969 2.17306 2.41405 3.08328 3.30664 3.34785 3.61403 3.68054 3.70802 3.83275 3.86354 4.05701 4.16227 4.17387 4.21692 4.23243 4.27471 4.38453 4.40077 4.53090 4.58954 4.66174 4.73972 4.80357 4.88520 4.93335 5.02572 5.08840 5.18206 5.28567 5.40736 5.45772 5.52808 5.73162 5.96385 6.19899 6.30004 6.49130 6.75956 7.19945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.502 6.502 5 C -0.102 4.102 6 C -0.099 4.099 7 H 0.109 0.891 8 C -0.147 4.147 9 C 0.126 3.874 10 H 0.121 0.879 11 N -0.724 5.724 12 C 0.592 3.408 13 O -0.520 6.520 14 C -0.057 4.057 15 C -0.062 4.062 16 C -0.093 4.093 17 C -0.198 4.198 18 C 0.073 3.927 19 C -0.062 4.062 20 O -0.542 6.542 21 Si 0.713 3.287 22 N -0.525 5.525 23 C -0.140 4.140 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.394 0.606 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.151 0.849 36 H 0.078 0.922 37 H 0.384 0.616 38 H -0.250 1.250 39 H -0.259 1.259 40 H 0.415 0.585 41 H 0.082 0.918 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 -4.793 -1.205 7.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.389 6.389 5 C -0.140 4.140 6 C -0.118 4.118 7 H 0.127 0.873 8 C -0.186 4.186 9 C 0.022 3.978 10 H 0.138 0.862 11 N -0.374 5.374 12 C 0.380 3.620 13 O -0.396 6.396 14 C -0.170 4.170 15 C -0.071 4.071 16 C -0.150 4.150 17 C -0.222 4.222 18 C -0.045 4.045 19 C -0.171 4.171 20 O -0.350 6.350 21 Si 0.612 3.388 22 N -0.121 5.121 23 C -0.178 4.178 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.233 0.767 38 H -0.174 1.174 39 H -0.184 1.184 40 H 0.253 0.747 41 H 0.101 0.899 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.074 -3.501 -0.878 5.443 hybrid contribution -0.153 -2.316 0.238 2.333 sum 3.921 -5.818 -0.640 7.045 Atomic orbital electron populations 1.23300 0.75924 1.03925 1.02728 1.86501 1.23807 1.33547 1.84096 1.23807 0.92284 0.81406 0.72435 1.90700 1.67216 1.36290 1.44737 1.21402 0.87666 0.98890 1.06025 1.22281 0.96064 0.94151 0.99256 0.87309 1.23596 0.98467 1.00181 0.96334 1.22500 0.86295 1.00021 0.89024 0.86162 1.45875 1.36977 1.11829 1.42735 1.17051 0.81862 0.83458 0.79621 1.90840 1.50723 1.33321 1.64686 1.20221 1.00727 0.89066 1.06967 1.19919 0.96210 0.95051 0.95915 1.20398 1.00195 0.90536 1.03892 1.20537 1.02225 0.93813 1.05644 1.19795 0.95462 0.94158 0.95067 1.24596 0.97026 0.93883 1.01563 1.86568 1.37412 1.40473 1.70519 0.94320 0.79535 0.84953 0.80040 1.41801 1.26672 1.10893 1.32769 1.23422 0.95794 0.98430 1.00138 0.91744 0.87925 0.91771 0.87184 0.87520 0.89754 0.90222 0.77272 0.91273 0.91493 0.89971 0.83146 0.90406 0.76684 1.17360 1.18437 0.74750 0.89906 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.46 10.56 -39.23 -0.41 -0.88 16 3 C 0.46 0.67 7.96 36.01 0.29 0.96 16 4 O -0.50 -2.31 15.51 -18.75 -0.29 -2.60 16 5 C -0.10 0.22 5.65 -27.88 -0.16 0.06 16 6 C -0.10 0.14 3.15 -89.71 -0.28 -0.14 16 7 H 0.11 -0.01 7.68 -51.93 -0.40 -0.40 16 8 C -0.15 0.03 7.45 -25.83 -0.19 -0.16 16 9 C 0.13 -0.05 4.21 -67.12 -0.28 -0.33 16 10 H 0.12 0.17 7.50 -51.93 -0.39 -0.22 16 11 N -0.72 0.26 5.36 -54.32 -0.29 -0.04 16 12 C 0.59 1.80 7.79 -12.85 -0.10 1.70 16 13 O -0.52 -3.31 14.42 5.20 0.07 -3.23 16 14 C -0.06 -0.14 7.06 -81.98 -0.58 -0.72 16 15 C -0.06 -0.18 6.21 -104.16 -0.65 -0.83 16 16 C -0.09 -0.22 9.83 36.01 0.35 0.13 16 17 C -0.20 -0.28 9.27 -39.98 -0.37 -0.65 16 18 C 0.07 0.05 6.51 -81.95 -0.53 -0.48 16 19 C -0.06 0.09 3.07 36.01 0.11 0.20 16 20 O -0.54 0.27 12.86 -35.23 -0.45 -0.18 16 21 Si 0.71 -1.40 30.54 -169.99 -5.19 -6.59 16 22 N -0.53 -0.09 5.99 -5.69 -0.03 -0.12 16 23 C -0.14 0.41 7.39 -25.92 -0.19 0.22 16 24 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 25 H 0.10 -0.28 8.14 -51.93 -0.42 -0.71 16 26 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 27 H 0.11 -0.43 8.14 -51.93 -0.42 -0.85 16 28 H 0.11 -0.39 7.85 -51.93 -0.41 -0.79 16 29 H 0.08 -0.08 7.90 -51.93 -0.41 -0.49 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.39 -1.22 7.84 -40.82 -0.32 -1.54 16 32 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 34 H 0.08 0.31 6.48 -51.93 -0.34 -0.02 16 35 H 0.15 -0.09 6.17 -52.48 -0.32 -0.42 16 36 H 0.08 -0.27 7.96 -51.93 -0.41 -0.69 16 37 H 0.38 -1.71 8.74 45.56 0.40 -1.31 16 38 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 39 H -0.26 0.06 7.11 56.52 0.40 0.46 16 40 H 0.42 -1.04 8.19 -40.82 -0.33 -1.38 16 41 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 42 H 0.09 -0.40 8.07 -51.93 -0.42 -0.82 16 LS Contribution 355.05 15.07 5.35 5.35 Total: 0.00 -10.21 355.05 -8.70 -18.91 By element: Atomic # 1 Polarization: -5.70 SS G_CDS: -5.93 Total: -11.63 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.52 Total: 1.01 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -0.33 Total: -0.16 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -1.08 Total: -6.89 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.19 Total: -6.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -10.21 -8.70 -18.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_13940406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.872 kcal (2) G-P(sol) polarization free energy of solvation -10.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds