Wall clock time and date at job start Sun Mar 7 2021 14:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00218 * 2 1 4 4 O 1.20827 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00085 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46994 * 179.97438 * 5 3 2 7 7 H 1.08999 * 112.84920 * 316.19617 * 6 5 3 8 8 C 1.53958 * 113.66573 * 87.44002 * 6 5 3 9 9 C 1.53781 * 87.01946 * 139.93167 * 8 6 5 10 10 H 1.08997 * 113.61342 * 89.22850 * 9 8 6 11 11 N 1.46500 * 113.61510 * 220.05095 * 9 8 6 12 12 C 1.34771 * 119.99658 * 254.13547 * 11 9 8 13 13 O 1.21693 * 120.00188 * 0.02562 * 12 11 9 14 14 C 1.46680 * 119.99875 * 179.97438 * 12 11 9 15 15 C 1.37876 * 126.23468 * 179.71008 * 14 12 11 16 16 C 1.50704 * 126.45452 * 0.24762 * 15 14 12 17 17 C 1.39831 * 107.08651 * 180.26342 * 15 14 12 18 18 C 1.35452 * 107.86497 * 0.02562 * 17 15 14 19 19 C 1.50706 * 125.56404 * 179.97438 * 18 17 15 20 20 O 1.42897 * 109.46921 * 119.99973 * 19 18 17 21 21 Si 1.86298 * 109.47171 * 359.97438 * 19 18 17 22 22 N 1.35531 * 108.87411 * 359.97438 * 18 17 15 23 23 C 1.53781 * 113.61524 * 185.00028 * 6 5 3 24 24 H 1.09000 * 109.46790 * 60.00543 * 1 2 3 25 25 H 1.09000 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47100 * 299.99980 * 1 2 3 27 27 H 1.08996 * 109.46481 * 60.00169 * 5 3 2 28 28 H 1.08994 * 109.46711 * 299.99957 * 5 3 2 29 29 H 1.08995 * 113.61103 * 25.41269 * 8 6 5 30 30 H 1.08995 * 113.66856 * 254.45839 * 8 6 5 31 31 H 0.97000 * 120.00292 * 74.13322 * 11 9 8 32 32 H 1.09002 * 109.47116 * 89.99565 * 16 15 14 33 33 H 1.09001 * 109.46889 * 209.99704 * 16 15 14 34 34 H 1.08999 * 109.46738 * 329.99523 * 16 15 14 35 35 H 1.08003 * 126.06753 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.46756 * 239.99844 * 19 18 17 37 37 H 0.96698 * 114.00216 * 179.97438 * 20 19 18 38 38 H 1.48500 * 110.00062 * 59.99851 * 21 19 18 39 39 H 1.48497 * 109.99938 * 181.31729 * 21 19 18 40 40 H 0.97004 * 125.68166 * 180.02562 * 22 18 17 41 41 H 1.08993 * 113.61273 * 105.46942 * 23 6 5 42 42 H 1.09003 * 113.68893 * 334.57962 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7419 -0.0002 7 1 3.4254 3.3529 -0.6961 8 6 4.1145 3.3533 1.4082 9 6 5.3812 4.0676 0.9079 10 1 5.1852 5.0423 0.4612 11 7 6.4642 4.1010 1.8940 12 6 6.7538 5.2489 2.5380 13 8 6.1155 6.2575 2.3008 14 6 7.8378 5.2823 3.5256 15 6 8.2452 6.3813 4.2516 16 6 7.6584 7.7677 4.1828 17 6 9.3057 5.9673 5.0635 18 6 9.5232 4.6519 4.8243 19 6 10.5777 3.8031 5.4867 20 8 9.9520 2.7235 6.1830 21 14 11.5448 4.8431 6.6925 22 7 8.6377 4.2236 3.8919 23 6 5.5210 2.9346 -0.1225 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9564 0.7804 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 4.3075 2.6178 2.1890 30 1 3.2997 4.0330 1.6575 31 1 6.9727 3.2970 2.0833 32 1 6.8515 7.8573 4.9101 33 1 8.4327 8.5015 4.4070 34 1 7.2668 7.9471 3.1815 35 1 9.8546 6.5866 5.7575 36 1 11.2521 3.4045 4.7288 37 1 10.5721 2.1343 6.6340 38 1 10.6369 5.3931 7.7310 39 1 12.6085 4.0255 7.3291 40 1 8.5775 3.3212 3.5411 41 1 5.8400 3.2767 -1.1070 42 1 6.1006 2.0850 0.2387 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_13940406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:26:22 Heat of formation + Delta-G solvation = -89.031704 kcal Electronic energy + Delta-G solvation = -25084.702627 eV Core-core repulsion = 21225.859197 eV Total energy + Delta-G solvation = -3858.843430 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59866 -41.69655 -40.77216 -39.28234 -37.82494 -37.52294 -35.09575 -33.50078 -32.08970 -31.25667 -28.50618 -28.20414 -27.01173 -26.74291 -24.55828 -22.59246 -21.80787 -21.41895 -20.96024 -20.17772 -19.34981 -18.60895 -18.59302 -17.90101 -17.59196 -17.08683 -16.82747 -16.45294 -16.18165 -15.95757 -15.30575 -15.07969 -14.86522 -14.70033 -14.51243 -14.24572 -13.99236 -13.88241 -13.60634 -13.52360 -13.40418 -13.30695 -13.12750 -12.95015 -12.82402 -12.48435 -12.19241 -12.00126 -11.90730 -11.84184 -11.51314 -11.36715 -11.08400 -10.62944 -10.20714 -9.82863 -9.18156 -4.83799 0.28649 1.15405 1.21297 1.52504 1.65413 1.73591 1.95921 2.04868 2.20156 2.23614 3.24152 3.39049 3.44456 3.70725 3.75299 3.79583 3.83461 3.87560 4.12624 4.16999 4.23402 4.25274 4.28140 4.42352 4.44368 4.59518 4.66391 4.69061 4.71127 4.75400 4.80994 4.82594 4.88634 4.96627 5.05569 5.14894 5.19565 5.34848 5.38698 5.51617 5.64689 5.84155 6.31535 6.48023 6.54489 6.69010 7.07351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.544 6.544 5 C -0.096 4.096 6 C -0.096 4.096 7 H 0.088 0.912 8 C -0.149 4.149 9 C 0.117 3.883 10 H 0.094 0.906 11 N -0.706 5.706 12 C 0.587 3.413 13 O -0.565 6.565 14 C -0.071 4.071 15 C -0.087 4.087 16 C -0.090 4.090 17 C -0.211 4.211 18 C 0.074 3.926 19 C -0.063 4.063 20 O -0.561 6.561 21 Si 0.785 3.215 22 N -0.512 5.512 23 C -0.116 4.116 24 H 0.059 0.941 25 H 0.128 0.872 26 H 0.057 0.943 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.410 0.590 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.165 0.835 36 H 0.109 0.891 37 H 0.401 0.599 38 H -0.302 1.302 39 H -0.278 1.278 40 H 0.428 0.572 41 H 0.090 0.910 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 -7.238 -1.513 10.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.115 4.115 7 H 0.106 0.894 8 C -0.188 4.188 9 C 0.013 3.987 10 H 0.113 0.887 11 N -0.356 5.356 12 C 0.376 3.624 13 O -0.444 6.444 14 C -0.184 4.184 15 C -0.096 4.096 16 C -0.147 4.147 17 C -0.235 4.235 18 C -0.045 4.045 19 C -0.172 4.172 20 O -0.372 6.372 21 Si 0.688 3.312 22 N -0.110 5.110 23 C -0.154 4.154 24 H 0.078 0.922 25 H 0.146 0.854 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.247 0.753 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.182 0.818 36 H 0.127 0.873 37 H 0.253 0.747 38 H -0.230 1.230 39 H -0.205 1.205 40 H 0.268 0.732 41 H 0.109 0.891 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.075 -6.031 -1.215 8.646 hybrid contribution -0.808 -1.579 0.412 1.821 sum 5.267 -7.609 -0.802 9.289 Atomic orbital electron populations 1.23472 0.75364 1.05463 1.02208 1.86506 1.24551 1.33474 1.83813 1.24605 0.93695 0.80813 0.71044 1.90689 1.68377 1.37542 1.46798 1.21535 0.84951 0.98412 1.08366 1.22170 0.97154 0.94529 0.97624 0.89359 1.23617 0.97442 1.00061 0.97699 1.22506 0.86394 0.99951 0.89878 0.88747 1.45727 1.36605 1.11535 1.41779 1.17246 0.81731 0.83681 0.79752 1.90817 1.52342 1.35022 1.66179 1.20137 1.01166 0.89818 1.07276 1.20163 0.97171 0.95348 0.96911 1.20339 1.00481 0.91390 1.02516 1.20771 1.02161 0.94669 1.05874 1.20168 0.95443 0.94288 0.94573 1.24710 0.96339 0.93816 1.02312 1.86519 1.38789 1.40931 1.70935 0.93448 0.76967 0.82912 0.77832 1.41746 1.25872 1.11051 1.32293 1.23350 0.94636 0.97830 0.99541 0.92210 0.85368 0.92436 0.84484 0.85118 0.88439 0.93428 0.75319 0.91965 0.89784 0.91870 0.81815 0.87324 0.74689 1.22990 1.20475 0.73165 0.89150 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.37 -0.84 10.56 -51.33 -0.54 -1.38 16 3 C 0.45 1.42 7.96 71.24 0.57 1.99 16 4 O -0.54 -5.95 15.51 21.96 0.34 -5.61 16 5 C -0.10 0.55 5.65 29.85 0.17 0.72 16 6 C -0.10 0.28 3.15 -10.21 -0.03 0.25 16 7 H 0.09 0.13 7.68 -2.39 -0.02 0.11 16 8 C -0.15 -0.09 7.45 31.18 0.23 0.15 16 9 C 0.12 -0.01 4.21 45.52 0.19 0.18 16 10 H 0.09 0.52 7.50 -2.39 -0.02 0.50 16 11 N -0.71 0.43 5.36 -444.00 -2.38 -1.94 16 12 C 0.59 4.41 7.79 86.45 0.67 5.09 16 13 O -0.56 -8.85 14.42 -4.32 -0.06 -8.92 16 14 C -0.07 -0.39 7.06 40.35 0.28 -0.11 16 15 C -0.09 -0.61 6.21 -19.56 -0.12 -0.73 16 16 C -0.09 -0.62 9.83 71.24 0.70 0.08 16 17 C -0.21 -0.61 9.27 22.01 0.20 -0.41 16 18 C 0.07 0.03 6.51 41.35 0.27 0.30 16 19 C -0.06 0.31 3.07 71.24 0.22 0.53 16 20 O -0.56 1.58 12.86 -148.98 -1.92 -0.33 16 21 Si 0.78 -3.69 30.54 68.60 2.10 -1.59 16 22 N -0.51 0.27 5.99 -171.92 -1.03 -0.76 16 23 C -0.12 0.86 7.39 31.12 0.23 1.09 16 24 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 25 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 26 H 0.06 0.04 8.13 -2.39 -0.02 0.02 16 27 H 0.14 -1.47 8.14 -2.39 -0.02 -1.48 16 28 H 0.13 -1.32 7.85 -2.39 -0.02 -1.34 16 29 H 0.10 -0.22 7.90 -2.39 -0.02 -0.24 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.41 -3.14 7.84 -92.71 -0.73 -3.87 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.06 0.67 6.48 -2.39 -0.02 0.66 16 35 H 0.16 -0.19 6.17 -2.91 -0.02 -0.20 16 36 H 0.11 -1.13 7.96 -2.39 -0.02 -1.15 16 37 H 0.40 -4.36 8.74 -74.06 -0.65 -5.01 16 38 H -0.30 -1.27 7.11 99.48 0.71 -0.56 16 39 H -0.28 0.41 7.11 99.48 0.71 1.12 16 40 H 0.43 -2.91 8.19 -92.71 -0.76 -3.67 16 41 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 42 H 0.12 -1.54 8.07 -2.39 -0.02 -1.56 16 Total: 0.00 -27.79 355.05 0.27 -27.52 By element: Atomic # 1 Polarization: -16.26 SS G_CDS: -1.02 Total: -17.29 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 4.78 Total: 10.30 kcal Atomic # 7 Polarization: 0.70 SS G_CDS: -3.41 Total: -2.71 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -2.18 Total: -16.24 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.10 Total: -1.59 kcal Total: -27.79 0.27 -27.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_13940406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.510 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds