Wall clock time and date at job start Sun Mar 7 2021 14:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47581 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.84811 * 43.79680 * 6 5 3 8 8 C 1.53776 * 113.62044 * 174.99953 * 6 5 3 9 9 C 1.53781 * 87.08638 * 139.97658 * 8 6 5 10 10 H 1.08995 * 113.60861 * 89.19777 * 9 8 6 11 11 N 1.46498 * 113.61382 * 220.02313 * 9 8 6 12 12 C 1.34774 * 119.99625 * 205.00117 * 11 9 8 13 13 O 1.21558 * 119.99915 * 359.97438 * 12 11 9 14 14 C 1.47844 * 120.00186 * 179.97438 * 12 11 9 15 15 C 1.39558 * 120.14612 * 179.72286 * 14 12 11 16 16 C 1.37982 * 119.84762 * 179.74414 * 15 14 12 17 17 C 1.50702 * 119.92204 * 180.26931 * 16 15 14 18 18 O 1.42894 * 109.47669 * 270.25980 * 17 16 15 19 19 C 1.35903 * 117.00300 * 180.02562 * 18 17 16 20 20 C 1.38715 * 120.05363 * 179.72623 * 19 18 17 21 21 C 1.38167 * 119.93880 * 179.71468 * 20 19 18 22 22 C 1.50702 * 119.96919 * 180.27202 * 21 20 19 23 23 O 1.42895 * 109.47474 * 300.30101 * 22 21 20 24 24 Si 1.86299 * 109.47085 * 180.30235 * 22 21 20 25 25 C 1.38243 * 120.05917 * 0.57820 * 21 20 19 26 26 C 1.38289 * 120.10605 * 359.67463 * 25 21 20 27 27 C 1.38126 * 120.06216 * 0.04695 * 26 25 21 28 28 C 1.38328 * 120.14888 * 0.53136 * 16 15 14 29 29 C 1.38381 * 120.29202 * 359.74269 * 28 16 15 30 30 C 1.37933 * 120.14687 * 359.97438 * 29 28 16 31 31 C 1.53778 * 87.07826 * 334.56876 * 9 8 6 32 32 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 34 34 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 35 35 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 36 36 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 37 37 H 1.08999 * 113.61219 * 254.53069 * 8 6 5 38 38 H 1.09010 * 113.61212 * 25.34120 * 8 6 5 39 39 H 0.96995 * 120.00579 * 24.99464 * 11 9 8 40 40 H 1.07997 * 120.07636 * 0.02562 * 15 14 12 41 41 H 1.08999 * 109.47014 * 30.26351 * 17 16 15 42 42 H 1.09006 * 109.46732 * 150.25636 * 17 16 15 43 43 H 1.07994 * 120.03138 * 359.97438 * 20 19 18 44 44 H 1.09000 * 109.47227 * 60.30689 * 22 21 20 45 45 H 0.96695 * 114.00289 * 179.97438 * 23 22 21 46 46 H 1.48507 * 110.00180 * 298.68309 * 24 22 21 47 47 H 1.48503 * 110.00023 * 59.99834 * 24 22 21 48 48 H 1.07994 * 119.94724 * 179.69423 * 25 21 20 49 49 H 1.08005 * 119.97033 * 180.02562 * 26 25 21 50 50 H 1.08000 * 120.03053 * 180.02562 * 27 26 25 51 51 H 1.08004 * 119.85775 * 179.71886 * 28 16 15 52 52 H 1.08005 * 119.92677 * 180.02562 * 29 28 16 53 53 H 1.08001 * 120.07590 * 180.02562 * 30 29 28 54 54 H 1.09007 * 113.61587 * 270.88136 * 31 9 8 55 55 H 1.09000 * 113.61680 * 139.97923 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4252 3.3531 0.6960 8 6 5.5209 2.9348 0.1225 9 6 5.3811 4.0677 -0.9080 10 1 5.1851 5.0424 -0.4612 11 7 6.4641 4.1011 -1.8940 12 6 6.7741 5.2561 -2.5155 13 8 6.1548 6.2699 -2.2582 14 6 7.8674 5.2900 -3.5101 15 6 8.1872 6.4831 -4.1598 16 6 9.2122 6.5089 -5.0831 17 6 9.5629 7.7977 -5.7811 18 8 8.7933 7.9152 -6.9794 19 6 8.9909 9.0289 -7.7328 20 6 8.2813 9.2049 -8.9117 21 6 8.4797 10.3408 -9.6729 22 6 7.7047 10.5357 -10.9506 23 8 7.9857 9.4590 -11.8471 24 14 8.2041 12.1475 -11.7401 25 6 9.3932 11.2957 -9.2667 26 6 10.1055 11.1199 -8.0946 27 6 9.9067 9.9889 -7.3270 28 6 9.9150 5.3534 -5.3735 29 6 9.5992 4.1659 -4.7371 30 6 8.5807 4.1275 -3.8077 31 6 4.1155 3.3511 -1.4072 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3632 0.5138 -0.8900 35 1 3.9564 0.7806 0.8893 36 1 3.9558 0.7809 -0.8907 37 1 5.8399 3.2769 1.1070 38 1 6.0993 2.0839 -0.2378 39 1 6.9581 3.2920 -2.0994 40 1 7.6366 7.3850 -3.9369 41 1 9.3423 8.6386 -5.1236 42 1 10.6243 7.7992 -6.0293 43 1 7.5714 8.4568 -9.2321 44 1 6.6377 10.5549 -10.7290 45 1 7.5195 9.5190 -12.6921 46 1 7.8877 13.2781 -10.8307 47 1 9.6570 12.1341 -12.0472 48 1 9.5504 12.1805 -9.8656 49 1 10.8183 11.8676 -7.7791 50 1 10.4631 9.8523 -6.4115 51 1 10.7134 5.3780 -6.1003 52 1 10.1521 3.2672 -4.9680 53 1 8.3355 3.2001 -3.3114 54 1 4.3095 2.6146 -2.1871 55 1 3.2997 4.0292 -1.6576 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_4549630.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:26:53 Heat of formation + Delta-G solvation = -105.082546 kcal Electronic energy + Delta-G solvation = -36779.554778 eV Core-core repulsion = 31714.553110 eV Total energy + Delta-G solvation = -5065.001668 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.181 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.82545 -41.54808 -41.25374 -40.19752 -39.33448 -38.76815 -37.50842 -37.33625 -35.11950 -33.47594 -32.70196 -32.32253 -31.47026 -31.12084 -28.45331 -27.82499 -26.71847 -26.64592 -25.81263 -23.86757 -23.82274 -23.16684 -22.19873 -21.80914 -21.45401 -20.49052 -19.07262 -18.88601 -18.54352 -18.42307 -17.96243 -17.59088 -17.57686 -17.42632 -17.23200 -17.15225 -16.80461 -16.27509 -16.07751 -15.92751 -15.88679 -15.58674 -15.27674 -14.88471 -14.84529 -14.66557 -14.62158 -14.49972 -14.30425 -13.98765 -13.86219 -13.69811 -13.50223 -13.48656 -13.37489 -13.20079 -12.93954 -12.84455 -12.77356 -12.45915 -12.37300 -12.18387 -12.16635 -12.01221 -11.88695 -11.85339 -11.82484 -11.49816 -11.35446 -11.08832 -10.45401 -10.28311 -10.06517 -9.98730 -9.95166 -9.41969 -4.94964 -0.29763 0.05358 0.11998 0.21560 1.17349 1.26653 1.63088 1.64089 1.75652 1.95398 2.03407 2.17257 2.49450 2.82582 3.34000 3.40562 3.45830 3.47733 3.54117 3.69279 3.73149 3.74618 3.78410 3.80644 3.83740 3.89241 3.95289 4.05043 4.10971 4.12965 4.17494 4.24127 4.26252 4.27417 4.29733 4.38529 4.45662 4.47662 4.55975 4.61735 4.67474 4.68778 4.72811 4.79040 4.83011 4.84532 4.86377 4.99106 5.07546 5.07679 5.15688 5.18923 5.21544 5.27288 5.28007 5.35732 5.40235 5.53032 5.54959 5.75892 6.24133 6.43337 6.70939 6.87266 7.09723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.097 4.097 7 H 0.085 0.915 8 C -0.115 4.115 9 C 0.113 3.887 10 H 0.089 0.911 11 N -0.696 5.696 12 C 0.555 3.445 13 O -0.587 6.587 14 C -0.156 4.156 15 C -0.056 4.056 16 C -0.115 4.115 17 C 0.097 3.903 18 O -0.323 6.323 19 C 0.123 3.877 20 C -0.142 4.142 21 C -0.051 4.051 22 C -0.087 4.087 23 O -0.564 6.564 24 Si 0.786 3.214 25 C -0.182 4.182 26 C -0.074 4.074 27 C -0.207 4.207 28 C -0.069 4.069 29 C -0.124 4.124 30 C -0.065 4.065 31 C -0.149 4.149 32 H 0.128 0.872 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.418 0.582 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.092 0.908 45 H 0.404 0.596 46 H -0.287 1.287 47 H -0.293 1.293 48 H 0.122 0.878 49 H 0.154 0.846 50 H 0.155 0.845 51 H 0.149 0.851 52 H 0.167 0.833 53 H 0.164 0.836 54 H 0.103 0.897 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 -7.446 -1.131 8.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.116 4.116 7 H 0.103 0.897 8 C -0.153 4.153 9 C 0.008 3.992 10 H 0.107 0.893 11 N -0.348 5.348 12 C 0.344 3.656 13 O -0.468 6.468 14 C -0.159 4.159 15 C -0.075 4.075 16 C -0.115 4.115 17 C 0.023 3.977 18 O -0.238 6.238 19 C 0.078 3.922 20 C -0.161 4.161 21 C -0.052 4.052 22 C -0.196 4.196 23 O -0.374 6.374 24 Si 0.692 3.308 25 C -0.200 4.200 26 C -0.091 4.091 27 C -0.226 4.226 28 C -0.087 4.087 29 C -0.141 4.141 30 C -0.083 4.083 31 C -0.187 4.187 32 H 0.147 0.853 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.106 0.894 38 H 0.142 0.858 39 H 0.258 0.742 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.147 0.853 44 H 0.110 0.890 45 H 0.255 0.745 46 H -0.214 1.214 47 H -0.221 1.221 48 H 0.139 0.861 49 H 0.172 0.828 50 H 0.172 0.828 51 H 0.167 0.833 52 H 0.184 0.816 53 H 0.181 0.819 54 H 0.122 0.878 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.188 -6.134 -0.404 7.438 hybrid contribution -0.511 0.139 0.585 0.789 sum 3.676 -5.995 0.181 7.034 Atomic orbital electron populations 1.23471 0.75401 1.05461 1.02175 1.86508 1.24516 1.33466 1.83810 1.24636 0.93749 0.80789 0.71001 1.90692 1.68418 1.37589 1.46862 1.21541 0.84844 0.98279 1.08539 1.22141 0.97225 0.94635 0.97629 0.89665 1.23363 0.94607 0.97896 0.99401 1.22510 0.86751 0.99770 0.90184 0.89329 1.45733 1.36424 1.11134 1.41494 1.18637 0.82765 0.83485 0.80741 1.90776 1.54508 1.35527 1.65974 1.19905 0.99362 0.95896 1.00745 1.21160 0.94629 0.97748 0.93982 1.19485 0.98172 0.95516 0.98329 1.21788 0.96237 0.95767 0.83927 1.86138 1.63316 1.38877 1.35441 1.19175 0.95013 0.86689 0.91354 1.20344 1.02908 0.99112 0.93741 1.19519 0.96257 0.93967 0.95428 1.24983 1.01806 1.02310 0.90497 1.86440 1.72864 1.47029 1.31031 0.94335 0.79378 0.71905 0.85231 1.20989 0.99499 1.00009 0.99522 1.21204 0.97854 0.97114 0.92961 1.21559 1.01855 0.95723 1.03444 1.21650 0.98270 0.91548 0.97276 1.21542 0.97591 0.99033 0.95981 1.21724 0.93496 0.97093 0.96011 1.23601 0.97189 1.00098 0.97847 0.85347 0.92284 0.92433 0.84477 0.84767 0.89397 0.85760 0.74243 0.86621 0.90354 0.88593 0.85257 0.89034 0.74452 1.21444 1.22109 0.86091 0.82832 0.82785 0.83331 0.81560 0.81854 0.87821 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -0.72 10.57 -51.35 -0.54 -1.27 16 3 C 0.45 1.29 7.96 71.23 0.57 1.86 16 4 O -0.55 -5.93 15.51 21.94 0.34 -5.59 16 5 C -0.10 0.60 5.65 29.85 0.17 0.77 16 6 C -0.10 0.30 3.15 -10.27 -0.03 0.27 16 7 H 0.08 0.15 7.68 -2.39 -0.02 0.13 16 8 C -0.11 0.87 7.39 31.12 0.23 1.10 16 9 C 0.11 0.00 4.24 45.52 0.19 0.20 16 10 H 0.09 0.57 7.46 -2.39 -0.02 0.56 16 11 N -0.70 0.85 5.31 -442.92 -2.35 -1.50 16 12 C 0.55 4.00 7.77 86.79 0.67 4.67 16 13 O -0.59 -10.14 15.95 -3.90 -0.06 -10.20 16 14 C -0.16 -0.57 5.87 -20.09 -0.12 -0.68 16 15 C -0.06 -0.36 9.25 22.53 0.21 -0.15 16 16 C -0.11 -0.31 5.50 -19.90 -0.11 -0.42 16 17 C 0.10 0.20 4.86 71.24 0.35 0.54 16 18 O -0.32 -2.67 10.12 -92.46 -0.94 -3.61 16 19 C 0.12 1.05 6.69 22.51 0.15 1.20 16 20 C -0.14 -1.41 9.55 22.37 0.21 -1.19 16 21 C -0.05 -0.43 5.42 -19.88 -0.11 -0.54 16 22 C -0.09 -0.21 2.81 71.24 0.20 -0.01 16 23 O -0.56 -1.34 12.74 -148.98 -1.90 -3.23 16 24 Si 0.79 -0.43 29.79 68.60 2.04 1.62 16 25 C -0.18 -1.36 8.67 22.28 0.19 -1.16 16 26 C -0.07 -0.34 10.04 22.26 0.22 -0.12 16 27 C -0.21 -0.97 9.04 22.37 0.20 -0.77 16 28 C -0.07 0.13 9.69 22.33 0.22 0.35 16 29 C -0.12 0.64 10.03 22.23 0.22 0.87 16 30 C -0.06 0.27 9.54 22.53 0.21 0.49 16 31 C -0.15 -0.03 7.43 31.12 0.23 0.20 16 32 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.06 0.01 8.13 -2.39 -0.02 0.00 16 34 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 35 H 0.14 -1.53 8.14 -2.38 -0.02 -1.55 16 36 H 0.13 -1.49 7.84 -2.39 -0.02 -1.51 16 37 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.12 -1.71 8.08 -2.38 -0.02 -1.73 16 39 H 0.42 -3.88 6.76 -92.71 -0.63 -4.51 16 40 H 0.12 1.15 7.65 -2.91 -0.02 1.13 16 41 H 0.08 0.07 7.61 -2.39 -0.02 0.05 16 42 H 0.10 -0.24 7.60 -2.38 -0.02 -0.26 16 43 H 0.13 1.28 8.06 -2.91 -0.02 1.25 16 44 H 0.09 -0.09 7.96 -2.39 -0.02 -0.11 16 45 H 0.40 -3.52 8.74 -74.06 -0.65 -4.17 16 46 H -0.29 -1.32 7.11 99.48 0.71 -0.62 16 47 H -0.29 -1.90 7.11 99.48 0.71 -1.20 16 48 H 0.12 0.73 4.87 -2.91 -0.01 0.71 16 49 H 0.15 -0.15 8.06 -2.91 -0.02 -0.17 16 50 H 0.15 -0.12 6.30 -2.91 -0.02 -0.14 16 51 H 0.15 -0.85 8.06 -2.91 -0.02 -0.87 16 52 H 0.17 -1.90 8.06 -2.91 -0.02 -1.92 16 53 H 0.16 -1.98 6.41 -2.91 -0.02 -2.00 16 54 H 0.10 -0.37 7.90 -2.38 -0.02 -0.39 16 55 H 0.04 0.31 8.14 -2.39 -0.02 0.30 16 Total: 0.00 -35.30 459.23 1.59 -33.71 By element: Atomic # 1 Polarization: -18.30 SS G_CDS: -0.29 Total: -18.59 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.29 Total: 8.65 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -2.35 Total: -1.50 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -3.10 Total: -23.89 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: 2.04 Total: 1.62 kcal Total: -35.30 1.59 -33.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_4549630.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.372 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds