Wall clock time and date at job start Sun Mar 7 2021 14:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00126 * 2 1 4 4 O 1.20833 * 119.99644 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00640 * 179.71955 * 3 2 1 6 6 C 1.52996 * 109.47298 * 180.27355 * 5 3 2 7 7 H 1.08997 * 112.84579 * 43.81252 * 6 5 3 8 8 C 1.53785 * 113.61286 * 174.99945 * 6 5 3 9 9 C 1.53788 * 87.08050 * 139.98379 * 8 6 5 10 10 H 1.09001 * 113.61059 * 89.19869 * 9 8 6 11 11 N 1.46494 * 113.61401 * 220.02237 * 9 8 6 12 12 C 1.34781 * 119.99528 * 204.99795 * 11 9 8 13 13 O 1.21696 * 120.00248 * 0.02562 * 12 11 9 14 14 C 1.46661 * 119.99761 * 179.97438 * 12 11 9 15 15 C 1.36545 * 125.98395 * 180.02562 * 14 12 11 16 16 C 1.50698 * 126.64845 * 359.93209 * 15 14 12 17 17 C 1.40366 * 106.70549 * 179.97438 * 15 14 12 18 18 C 1.35128 * 107.11491 * 0.02562 * 17 15 14 19 19 C 1.50702 * 125.61482 * 180.02562 * 18 17 15 20 20 O 1.42905 * 109.46950 * 90.00121 * 19 18 17 21 21 C 1.35906 * 116.99365 * 179.97438 * 20 19 18 22 22 C 1.38724 * 120.05937 * 359.72641 * 21 20 19 23 23 C 1.38149 * 119.94557 * 179.74230 * 22 21 20 24 24 C 1.38268 * 120.05267 * 0.50620 * 23 22 21 25 25 C 1.50696 * 119.94460 * 179.74571 * 24 23 22 26 26 O 1.42906 * 109.47078 * 245.02439 * 25 24 23 27 27 Si 1.86304 * 109.47071 * 5.02044 * 25 24 23 28 28 C 1.38270 * 120.11128 * 359.77087 * 24 23 22 29 29 C 1.38144 * 120.05674 * 359.97372 * 28 24 23 30 30 O 1.33931 * 108.76974 * 359.76699 * 18 17 15 31 31 C 1.53781 * 113.61738 * 272.49877 * 6 5 3 32 32 H 1.08997 * 109.47488 * 299.99586 * 1 2 3 33 33 H 1.08997 * 109.47515 * 60.00401 * 1 2 3 34 34 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47190 * 300.28291 * 5 3 2 36 36 H 1.09006 * 109.46468 * 60.27874 * 5 3 2 37 37 H 1.08997 * 113.61684 * 254.53679 * 8 6 5 38 38 H 1.09009 * 113.61434 * 25.44111 * 8 6 5 39 39 H 0.97001 * 120.00364 * 25.00141 * 11 9 8 40 40 H 1.08996 * 109.47479 * 90.00096 * 16 15 14 41 41 H 1.09002 * 109.47193 * 209.99599 * 16 15 14 42 42 H 1.09003 * 109.47091 * 329.99575 * 16 15 14 43 43 H 1.08000 * 126.44420 * 180.02562 * 17 15 14 44 44 H 1.09000 * 109.47035 * 209.99577 * 19 18 17 45 45 H 1.08991 * 109.47499 * 330.00006 * 19 18 17 46 46 H 1.08003 * 120.03257 * 359.97438 * 22 21 20 47 47 H 1.07994 * 119.97467 * 180.23218 * 23 22 21 48 48 H 1.08993 * 109.47210 * 125.02560 * 25 24 23 49 49 H 0.96704 * 113.99816 * 59.99852 * 26 25 24 50 50 H 1.48503 * 109.99733 * 58.68398 * 27 25 24 51 51 H 1.48499 * 109.99854 * 179.97438 * 27 25 24 52 52 H 1.07996 * 119.97409 * 179.97438 * 28 24 23 53 53 H 1.07998 * 120.02986 * 179.97438 * 29 28 24 54 54 H 1.08995 * 113.61698 * 334.56842 * 31 6 5 55 55 H 1.08995 * 113.61197 * 105.47474 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0064 6 6 3.9999 2.7422 0.0119 7 1 3.4219 3.3517 0.7065 8 6 5.5202 2.9347 0.1415 9 6 5.3849 4.0697 -0.8874 10 1 5.1868 5.0436 -0.4395 11 7 6.4722 4.1051 -1.8684 12 6 6.7849 5.2615 -2.4863 13 8 6.1643 6.2761 -2.2288 14 6 7.8738 5.2971 -3.4680 15 6 8.2922 6.3957 -4.1626 16 6 7.7264 7.7893 -4.0676 17 6 9.3507 5.9754 -4.9830 18 6 9.5294 4.6553 -4.7566 19 6 10.5626 3.7828 -5.4216 20 8 11.7645 3.7941 -4.6485 21 6 12.8037 3.0515 -5.1129 22 6 12.6676 2.3225 -6.2853 23 6 13.7272 1.5727 -6.7580 24 6 14.9192 1.5402 -6.0582 25 6 16.0716 0.7169 -6.5731 26 8 16.3502 -0.3405 -5.6530 27 14 15.6269 -0.0047 -8.2321 28 6 15.0555 2.2614 -4.8864 29 6 14.0007 3.0169 -4.4123 30 8 8.6408 4.2512 -3.8396 31 6 4.1214 3.3540 -1.3937 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.9524 0.7785 0.8966 36 1 3.9596 0.7832 -0.8834 37 1 5.8347 3.2748 1.1281 38 1 6.1002 2.0852 -0.2194 39 1 6.9671 3.2965 -2.0734 40 1 8.2575 8.3451 -3.2949 41 1 7.8448 8.2956 -5.0256 42 1 6.6678 7.7350 -3.8136 43 1 9.9161 6.5913 -5.6667 44 1 10.1856 2.7625 -5.4920 45 1 10.7703 4.1633 -6.4216 46 1 11.7352 2.3440 -6.8300 47 1 13.6230 1.0079 -7.6726 48 1 16.9528 1.3500 -6.6766 49 1 15.6084 -0.9447 -5.5119 50 1 15.3040 1.0838 -9.1893 51 1 16.7555 -0.8184 -8.7511 52 1 15.9875 2.2341 -4.3413 53 1 14.1075 3.5798 -3.4968 54 1 4.3190 2.6193 -2.1742 55 1 3.3068 4.0327 -1.6463 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_4549632.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:26:58 Heat of formation + Delta-G solvation = -117.516210 kcal Electronic energy + Delta-G solvation = -38000.477124 eV Core-core repulsion = 32744.480241 eV Total energy + Delta-G solvation = -5255.996884 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.181 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -43.94087 -41.71598 -41.28426 -40.96284 -39.45806 -39.18886 -37.50280 -37.16277 -35.55236 -34.73692 -33.19353 -32.07285 -31.67939 -31.39435 -28.94821 -28.61863 -28.02513 -26.72109 -26.20313 -24.88095 -23.96250 -22.83370 -22.55862 -22.23002 -21.67800 -21.12776 -20.43114 -19.45362 -19.19701 -18.55898 -18.30834 -17.91916 -17.58175 -17.51060 -17.38286 -17.14009 -16.87685 -16.58240 -16.29595 -16.10953 -15.92004 -15.72196 -15.59509 -15.29046 -14.85743 -14.73278 -14.60783 -14.48746 -14.34058 -14.23685 -14.13255 -13.91529 -13.81885 -13.70290 -13.51174 -13.48789 -13.42202 -13.37660 -12.93981 -12.84959 -12.80800 -12.24906 -12.18780 -12.05099 -12.01242 -11.89029 -11.81560 -11.73477 -11.49415 -11.36488 -11.24379 -10.81607 -10.38883 -10.28040 -10.02104 -9.71051 -9.22103 -4.98454 -0.27091 0.29449 0.32840 0.95953 1.18254 1.34255 1.35156 1.65876 1.76443 1.93828 2.00167 2.02470 2.38726 2.67631 3.29664 3.40799 3.46099 3.58636 3.62781 3.65085 3.73680 3.75288 3.79629 3.83443 3.89970 3.96801 4.04058 4.09708 4.25111 4.27512 4.28776 4.29159 4.33119 4.43965 4.46356 4.47609 4.51378 4.58741 4.62758 4.69179 4.69590 4.70172 4.72554 4.76043 4.84272 4.95160 4.96641 4.99579 5.05028 5.07385 5.17645 5.18021 5.27682 5.31773 5.40645 5.51748 5.52396 5.68215 5.71234 6.30486 6.33588 6.71874 6.81359 6.92156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.544 6.544 5 C -0.096 4.096 6 C -0.096 4.096 7 H 0.089 0.911 8 C -0.119 4.119 9 C 0.114 3.886 10 H 0.099 0.901 11 N -0.695 5.695 12 C 0.601 3.399 13 O -0.549 6.549 14 C -0.093 4.093 15 C -0.098 4.098 16 C -0.095 4.095 17 C -0.189 4.189 18 C 0.012 3.988 19 C 0.136 3.864 20 O -0.327 6.327 21 C 0.125 3.875 22 C -0.201 4.201 23 C -0.075 4.075 24 C -0.161 4.161 25 C -0.071 4.071 26 O -0.558 6.558 27 Si 0.777 3.223 28 C -0.062 4.062 29 C -0.163 4.163 30 O -0.157 6.157 31 C -0.146 4.146 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.418 0.582 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.182 0.818 44 H 0.108 0.892 45 H 0.128 0.872 46 H 0.162 0.838 47 H 0.152 0.848 48 H 0.102 0.898 49 H 0.395 0.605 50 H -0.284 1.284 51 H -0.304 1.304 52 H 0.132 0.868 53 H 0.131 0.869 54 H 0.100 0.900 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -7.535 -2.474 7.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.299 3.701 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.115 4.115 7 H 0.108 0.892 8 C -0.157 4.157 9 C 0.009 3.991 10 H 0.117 0.883 11 N -0.345 5.345 12 C 0.388 3.612 13 O -0.429 6.429 14 C -0.145 4.145 15 C -0.101 4.101 16 C -0.152 4.152 17 C -0.208 4.208 18 C -0.040 4.040 19 C 0.062 3.938 20 O -0.242 6.242 21 C 0.081 3.919 22 C -0.219 4.219 23 C -0.093 4.093 24 C -0.162 4.162 25 C -0.181 4.181 26 O -0.366 6.366 27 Si 0.683 3.317 28 C -0.080 4.080 29 C -0.181 4.181 30 O -0.053 6.053 31 C -0.185 4.185 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.255 0.745 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.199 0.801 44 H 0.126 0.874 45 H 0.146 0.854 46 H 0.179 0.821 47 H 0.169 0.831 48 H 0.120 0.880 49 H 0.245 0.755 50 H -0.211 1.211 51 H -0.233 1.233 52 H 0.150 0.850 53 H 0.149 0.851 54 H 0.119 0.881 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.228 -6.479 -2.788 7.057 hybrid contribution 0.045 0.751 0.217 0.783 sum 0.273 -5.728 -2.571 6.285 Atomic orbital electron populations 1.23472 0.75360 1.05459 1.02218 1.86509 1.24554 1.33483 1.83812 1.24580 0.93641 0.80814 0.71036 1.90688 1.68355 1.37515 1.46811 1.21534 0.85002 0.98386 1.08401 1.22137 0.96916 0.94620 0.97796 0.89236 1.23379 0.94869 0.97883 0.99527 1.22624 0.86291 1.00208 0.89951 0.88320 1.45813 1.36193 1.10824 1.41664 1.16687 0.80752 0.84281 0.79467 1.90860 1.52749 1.34767 1.64544 1.21844 1.00047 0.86981 1.05606 1.20971 0.96343 0.96902 0.95841 1.20445 1.01365 0.89914 1.03440 1.21880 1.00183 0.94469 1.04229 1.22424 0.93452 0.94807 0.93299 1.21262 0.79131 1.00117 0.93278 1.86113 1.21275 1.65729 1.51040 1.19084 0.87415 0.91804 0.93641 1.21495 1.01967 1.01347 0.97097 1.21044 0.91640 0.97494 0.99096 1.20337 0.96462 1.01917 0.97467 1.25131 0.98137 0.90870 1.03980 1.86472 1.43515 1.40989 1.65661 0.93845 0.84256 0.81095 0.72459 1.20921 0.98186 0.93773 0.95138 1.20620 0.91699 1.03712 1.02096 1.83953 1.38293 1.36135 1.46934 1.23582 0.97115 1.00100 0.97715 0.92256 0.92354 0.85396 0.84616 0.85008 0.89277 0.86390 0.74486 0.90541 0.89313 0.91151 0.80108 0.87416 0.85409 0.82098 0.83077 0.88003 0.75514 1.21073 1.23274 0.85000 0.85126 0.88115 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.63 10.57 -51.42 -0.54 -1.18 16 3 C 0.45 1.13 7.96 71.23 0.57 1.70 16 4 O -0.54 -5.47 15.51 21.94 0.34 -5.13 16 5 C -0.10 0.59 5.65 29.85 0.17 0.76 16 6 C -0.10 0.33 3.15 -10.27 -0.03 0.29 16 7 H 0.09 0.07 7.68 -2.39 -0.02 0.05 16 8 C -0.12 0.82 7.39 31.12 0.23 1.05 16 9 C 0.11 -0.04 4.24 45.52 0.19 0.15 16 10 H 0.10 0.44 7.46 -2.39 -0.02 0.42 16 11 N -0.69 -0.18 5.35 -444.00 -2.38 -2.55 16 12 C 0.60 4.30 7.79 86.44 0.67 4.97 16 13 O -0.55 -7.50 14.34 -4.34 -0.06 -7.57 16 14 C -0.09 -0.53 7.13 24.07 0.17 -0.36 16 15 C -0.10 -0.49 6.20 -19.74 -0.12 -0.61 16 16 C -0.10 -0.38 9.81 71.24 0.70 0.32 16 17 C -0.19 -0.12 10.73 22.07 0.24 0.12 16 18 C 0.01 0.00 6.94 24.97 0.17 0.17 16 19 C 0.14 -0.79 5.27 71.24 0.38 -0.41 16 20 O -0.33 -0.07 10.12 -92.50 -0.94 -1.01 16 21 C 0.13 -0.07 6.69 22.51 0.15 0.08 16 22 C -0.20 0.99 9.04 22.36 0.20 1.19 16 23 C -0.08 0.35 8.66 22.26 0.19 0.55 16 24 C -0.16 0.27 5.35 -19.85 -0.11 0.16 16 25 C -0.07 0.13 2.80 71.23 0.20 0.33 16 26 O -0.56 0.38 12.83 -148.98 -1.91 -1.53 16 27 Si 0.78 -3.03 29.80 68.60 2.04 -0.98 16 28 C -0.06 -0.02 9.68 22.25 0.22 0.20 16 29 C -0.16 -0.17 9.99 22.37 0.22 0.05 16 30 O -0.16 -0.40 10.40 -5.04 -0.05 -0.45 16 31 C -0.15 0.09 7.43 31.12 0.23 0.32 16 32 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 33 H 0.06 -0.01 8.13 -2.39 -0.02 -0.02 16 34 H 0.13 -0.87 8.14 -2.38 -0.02 -0.89 16 35 H 0.14 -1.45 8.14 -2.39 -0.02 -1.47 16 36 H 0.13 -1.39 7.84 -2.38 -0.02 -1.41 16 37 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.12 -1.38 8.08 -2.38 -0.02 -1.40 16 39 H 0.42 -2.02 8.48 -92.71 -0.79 -2.80 16 40 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.07 0.56 6.45 -2.39 -0.02 0.55 16 43 H 0.18 -0.79 8.06 -2.91 -0.02 -0.81 16 44 H 0.11 -1.07 7.65 -2.39 -0.02 -1.09 16 45 H 0.13 -1.42 7.67 -2.39 -0.02 -1.44 16 46 H 0.16 -1.79 6.30 -2.91 -0.02 -1.81 16 47 H 0.15 -1.45 4.90 -2.91 -0.01 -1.47 16 48 H 0.10 -0.01 7.96 -2.39 -0.02 -0.03 16 49 H 0.39 -3.53 8.70 -74.05 -0.64 -4.17 16 50 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 51 H -0.30 -1.34 7.11 99.48 0.71 -0.64 16 52 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 53 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 54 H 0.10 -0.36 7.90 -2.39 -0.02 -0.38 16 55 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 Total: 0.00 -28.58 461.93 1.90 -26.67 By element: Atomic # 1 Polarization: -18.01 SS G_CDS: -0.44 Total: -18.45 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.84 Total: 12.18 kcal Atomic # 7 Polarization: -0.18 SS G_CDS: -2.38 Total: -2.55 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -3.17 Total: -16.86 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.04 Total: -0.98 kcal Total: -28.58 1.90 -26.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_4549632.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.842 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds