Wall clock time and date at job start Sun Mar 7 2021 14:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00130 * 2 1 4 4 O 1.20829 * 119.99988 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00062 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46816 * 180.02562 * 5 3 2 7 7 H 1.09006 * 112.85187 * 316.19488 * 6 5 3 8 8 C 1.53779 * 113.69268 * 87.46527 * 6 5 3 9 9 C 1.53784 * 87.08045 * 139.99100 * 8 6 5 10 10 H 1.08994 * 113.61477 * 89.11454 * 9 8 6 11 11 N 1.46496 * 113.61320 * 220.02163 * 9 8 6 12 12 C 1.34774 * 120.00099 * 252.49766 * 11 9 8 13 13 O 1.21282 * 120.00036 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00600 * 180.02562 * 12 11 9 15 15 O 1.42900 * 109.47675 * 179.97438 * 14 12 11 16 16 C 1.35990 * 117.00131 * 180.02562 * 15 14 12 17 17 C 1.39156 * 120.07302 * 179.72816 * 16 15 14 18 18 O 1.35997 * 120.07196 * 359.97438 * 17 16 15 19 19 C 1.42900 * 117.00141 * 180.02562 * 18 17 16 20 20 C 1.38560 * 119.85533 * 179.74515 * 17 16 15 21 21 C 1.38250 * 119.99841 * 0.52421 * 20 17 16 22 22 C 1.50697 * 119.92408 * 179.70807 * 21 20 17 23 23 O 1.42901 * 109.46485 * 255.01753 * 22 21 20 24 24 Si 1.86293 * 109.47401 * 15.01742 * 22 21 20 25 25 C 1.38249 * 120.14472 * 359.72214 * 21 20 17 26 26 N 1.48000 * 119.92618 * 179.97438 * 25 21 20 27 27 O 1.21804 * 120.00385 * 180.02562 * 26 25 21 28 28 O 1.21799 * 119.99894 * 0.02967 * 26 25 21 29 29 C 1.38243 * 120.14741 * 0.02929 * 25 21 20 30 30 C 1.53779 * 113.61005 * 185.00289 * 6 5 3 31 31 H 1.09000 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47493 * 300.00529 * 1 2 3 33 33 H 1.09009 * 109.46520 * 60.00745 * 1 2 3 34 34 H 1.08996 * 109.47119 * 60.00203 * 5 3 2 35 35 H 1.08996 * 109.46848 * 299.99852 * 5 3 2 36 36 H 1.09002 * 113.61557 * 25.44212 * 8 6 5 37 37 H 1.09004 * 113.61501 * 254.53633 * 8 6 5 38 38 H 0.97002 * 120.00490 * 72.49429 * 11 9 8 39 39 H 1.09005 * 109.46821 * 300.00153 * 14 12 11 40 40 H 1.09008 * 109.47008 * 59.99541 * 14 12 11 41 41 H 1.09004 * 109.47450 * 180.02562 * 19 18 17 42 42 H 1.09000 * 109.46661 * 299.99481 * 19 18 17 43 43 H 1.08994 * 109.47219 * 59.99571 * 19 18 17 44 44 H 1.08000 * 120.00296 * 180.24743 * 20 17 16 45 45 H 1.08998 * 109.46764 * 135.02316 * 22 21 20 46 46 H 0.96705 * 113.99963 * 180.02562 * 23 22 21 47 47 H 1.48500 * 110.00350 * 300.00017 * 24 22 21 48 48 H 1.48501 * 110.00124 * 61.32420 * 24 22 21 49 49 H 1.07999 * 120.00143 * 179.97438 * 29 25 21 50 50 H 1.08997 * 113.61646 * 105.38661 * 30 6 5 51 51 H 1.09000 * 113.61527 * 334.47932 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.4252 3.3537 -0.6943 8 6 4.1151 3.3520 1.4081 9 6 5.3808 4.0685 0.9085 10 1 5.1833 5.0426 0.4612 11 7 6.4636 4.1027 1.8946 12 6 6.7734 5.2580 2.5155 13 8 6.1560 6.2696 2.2576 14 6 7.8877 5.2935 3.5295 15 8 8.0227 6.6202 4.0429 16 6 8.9912 6.8259 4.9751 17 6 9.1822 8.0946 5.5139 18 8 8.4012 9.1316 5.1090 19 6 8.6543 10.4057 5.7046 20 6 10.1668 8.2980 6.4674 21 6 10.9640 7.2440 6.8735 22 6 12.0387 7.4685 7.9057 23 8 13.3170 7.4817 7.2672 24 14 11.7522 9.1013 8.7557 25 6 10.7776 5.9846 6.3344 26 7 11.6342 4.8599 6.7723 27 8 11.4714 3.7499 6.2979 28 8 12.5018 5.0442 7.6070 29 6 9.7936 5.7738 5.3865 30 6 5.5209 2.9348 -0.1212 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8898 33 1 -0.3633 0.5138 -0.8902 34 1 3.9564 0.7806 -0.8891 35 1 3.9557 0.7809 0.8908 36 1 4.3091 2.6161 2.1885 37 1 3.2992 4.0303 1.6579 38 1 6.9577 3.2937 2.1008 39 1 7.6576 4.6091 4.3462 40 1 8.8211 4.9913 3.0544 41 1 7.9632 11.1422 5.2947 42 1 8.5135 10.3368 6.7833 43 1 9.6789 10.7097 5.4905 44 1 10.3145 9.2808 6.8901 45 1 12.0087 6.6653 8.6420 46 1 14.0579 7.6217 7.8728 47 1 11.7907 10.2046 7.7625 48 1 10.4397 9.0888 9.4504 49 1 9.6503 4.7892 4.9667 50 1 5.8400 3.2764 -1.1058 51 1 6.0993 2.0849 0.2411 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_4549636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:27:08 Heat of formation + Delta-G solvation = -154.493215 kcal Electronic energy + Delta-G solvation = -38962.384456 eV Core-core repulsion = 33413.983734 eV Total energy + Delta-G solvation = -5548.400722 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.159 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.46127 -42.23501 -41.74213 -41.17581 -40.13446 -39.36783 -39.02399 -37.79749 -37.51582 -37.13344 -34.99609 -32.87442 -32.70934 -31.75120 -29.88266 -28.99199 -28.32819 -27.97305 -26.72008 -25.91511 -24.70962 -23.85985 -23.16809 -22.10993 -21.68940 -20.81396 -20.59438 -19.90952 -19.59365 -18.89527 -18.75210 -18.53963 -18.28118 -18.21338 -17.84172 -17.76356 -17.72183 -17.57167 -17.01555 -16.88146 -16.57874 -16.18677 -16.00459 -15.71046 -15.54122 -15.22506 -14.87870 -14.77530 -14.51324 -14.32679 -14.17672 -14.02485 -13.86319 -13.58055 -13.49990 -13.38628 -13.02665 -12.94935 -12.85297 -12.71972 -12.68993 -12.52951 -12.44823 -12.39826 -12.22033 -12.18429 -11.92526 -11.89602 -11.83333 -11.50611 -11.36003 -11.07418 -10.63808 -10.24347 -10.17884 -9.62240 -5.01603 -1.40201 -0.57877 0.10818 0.22655 1.14406 1.16424 1.17284 1.33362 1.56510 1.69704 1.76718 1.76918 1.79981 2.29990 2.81280 3.03328 3.18972 3.32284 3.40206 3.43286 3.48571 3.72113 3.73910 3.75509 3.78337 3.79787 3.88472 3.92324 3.92903 3.98179 4.05765 4.09943 4.21742 4.23759 4.25801 4.28198 4.46023 4.48954 4.56833 4.59845 4.61622 4.67467 4.72650 4.76464 4.84479 4.97958 5.07489 5.19596 5.22960 5.38615 5.42966 5.54718 5.88896 6.38010 6.50348 6.70077 6.83959 7.06094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.099 4.099 7 H 0.084 0.916 8 C -0.148 4.148 9 C 0.116 3.884 10 H 0.088 0.912 11 N -0.695 5.695 12 C 0.515 3.485 13 O -0.572 6.572 14 C 0.025 3.975 15 O -0.292 6.292 16 C 0.103 3.897 17 C 0.162 3.838 18 O -0.306 6.306 19 C 0.004 3.996 20 C -0.187 4.187 21 C -0.005 4.005 22 C -0.099 4.099 23 O -0.553 6.553 24 Si 0.777 3.223 25 C -0.043 4.043 26 N 0.037 4.963 27 O -0.190 6.190 28 O -0.141 6.141 29 C -0.106 4.106 30 C -0.115 4.115 31 H 0.128 0.872 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.045 0.955 38 H 0.425 0.575 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.169 0.831 45 H 0.102 0.898 46 H 0.408 0.592 47 H -0.269 1.269 48 H -0.278 1.278 49 H 0.193 0.807 50 H 0.086 0.914 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 -3.178 2.149 5.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.118 4.118 7 H 0.102 0.898 8 C -0.187 4.187 9 C 0.011 3.989 10 H 0.106 0.894 11 N -0.348 5.348 12 C 0.301 3.699 13 O -0.450 6.450 14 C -0.053 4.053 15 O -0.204 6.204 16 C 0.056 3.944 17 C 0.113 3.887 18 O -0.217 6.217 19 C -0.090 4.090 20 C -0.206 4.206 21 C -0.007 4.007 22 C -0.208 4.208 23 O -0.363 6.363 24 Si 0.679 3.321 25 C -0.127 4.127 26 N 0.553 4.447 27 O -0.397 6.397 28 O -0.361 6.361 29 C -0.125 4.125 30 C -0.153 4.153 31 H 0.146 0.854 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.263 0.737 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.185 0.815 45 H 0.119 0.881 46 H 0.261 0.739 47 H -0.195 1.195 48 H -0.204 1.204 49 H 0.210 0.790 50 H 0.105 0.895 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.017 -0.936 1.019 1.717 hybrid contribution -0.322 -0.763 -0.031 0.829 sum 0.695 -1.699 0.988 2.084 Atomic orbital electron populations 1.23469 0.75404 1.05463 1.02176 1.86510 1.24519 1.33502 1.83805 1.24651 0.93769 0.80773 0.70987 1.90690 1.68425 1.37581 1.46881 1.21544 0.84802 0.98346 1.08525 1.22147 0.97283 0.94576 0.97810 0.89775 1.23605 0.97169 1.00103 0.97797 1.22485 0.86648 0.99703 0.90069 0.89366 1.45643 1.36668 1.10980 1.41550 1.20387 0.83952 0.83837 0.81765 1.90787 1.53802 1.35502 1.64884 1.22996 1.00236 0.83505 0.98518 1.86305 1.49958 1.31343 1.52834 1.17884 0.92118 0.90844 0.93557 1.18680 0.90441 0.87128 0.92420 1.86314 1.54431 1.17963 1.63030 1.23670 1.04519 0.81120 0.99650 1.21044 0.98162 1.00469 1.00949 1.19319 0.96102 0.89940 0.95295 1.25212 0.84625 1.14733 0.96203 1.86385 1.14656 1.96518 1.38774 0.93550 0.84215 0.72897 0.81423 1.20535 0.99176 0.87236 1.05740 1.43428 1.00193 1.01873 0.99220 1.94520 1.76003 1.10380 1.58830 1.94480 1.25804 1.89954 1.25848 1.20976 0.93530 1.01312 0.96702 1.23370 0.94556 0.97960 0.99406 0.85367 0.92393 0.92308 0.84586 0.84726 0.87582 0.93649 0.73657 0.85056 0.85066 0.85125 0.90904 0.90872 0.81455 0.88082 0.73945 1.19540 1.20396 0.79036 0.89520 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.63 10.57 -51.42 -0.54 -1.17 16 3 C 0.45 1.10 7.96 71.24 0.57 1.66 16 4 O -0.55 -5.66 15.51 21.96 0.34 -5.31 16 5 C -0.10 0.65 5.65 29.85 0.17 0.82 16 6 C -0.10 0.40 3.15 -10.27 -0.03 0.37 16 7 H 0.08 0.09 7.68 -2.38 -0.02 0.07 16 8 C -0.15 0.23 7.43 31.12 0.23 0.46 16 9 C 0.12 -0.24 4.24 45.52 0.19 -0.05 16 10 H 0.09 0.42 7.47 -2.39 -0.02 0.40 16 11 N -0.69 3.43 5.35 -440.04 -2.36 1.08 16 12 C 0.51 1.45 7.91 87.66 0.69 2.14 16 13 O -0.57 -8.68 16.10 16.00 0.26 -8.42 16 14 C 0.02 -0.07 5.22 71.24 0.37 0.30 16 15 O -0.29 -1.82 9.45 -67.02 -0.63 -2.45 16 16 C 0.10 0.46 6.70 22.57 0.15 0.61 16 17 C 0.16 0.86 6.70 22.57 0.15 1.01 16 18 O -0.31 -1.88 10.28 -79.65 -0.82 -2.70 16 19 C 0.00 -0.01 9.81 113.37 1.11 1.10 16 20 C -0.19 -0.57 7.65 22.35 0.17 -0.40 16 21 C 0.00 -0.02 5.29 -19.86 -0.11 -0.13 16 22 C -0.10 0.00 1.73 71.24 0.12 0.12 16 23 O -0.55 -0.27 11.77 -129.63 -1.53 -1.79 16 24 Si 0.78 -3.86 30.19 68.60 2.07 -1.79 16 25 C -0.04 -0.24 6.84 36.38 0.25 0.01 16 26 N 0.04 0.32 4.45 -46.47 -0.21 0.11 16 27 O -0.19 -1.79 18.44 18.88 0.35 -1.44 16 28 O -0.14 -1.29 14.62 25.10 0.37 -0.93 16 29 C -0.11 -0.19 8.54 22.35 0.19 0.00 16 30 C -0.12 1.01 7.39 31.12 0.23 1.24 16 31 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 33 H 0.06 0.00 8.13 -2.38 -0.02 -0.02 16 34 H 0.14 -1.55 8.14 -2.39 -0.02 -1.57 16 35 H 0.13 -1.58 7.85 -2.39 -0.02 -1.60 16 36 H 0.11 -0.60 7.90 -2.39 -0.02 -0.62 16 37 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.42 -5.74 8.73 -92.71 -0.81 -6.54 16 39 H 0.13 -1.26 7.67 -2.38 -0.02 -1.28 16 40 H 0.13 -1.25 7.66 -2.38 -0.02 -1.26 16 41 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.07 -0.35 7.65 -2.39 -0.02 -0.37 16 43 H 0.07 -0.32 7.67 -2.39 -0.02 -0.33 16 44 H 0.17 -0.05 3.13 -2.91 -0.01 -0.06 16 45 H 0.10 -0.05 6.07 -2.39 -0.01 -0.06 16 46 H 0.41 -3.92 8.74 -74.05 -0.65 -4.57 16 47 H -0.27 0.40 6.74 99.48 0.67 1.07 16 48 H -0.28 0.11 7.11 99.48 0.71 0.82 16 49 H 0.19 -0.85 5.85 -2.91 -0.02 -0.87 16 50 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 51 H 0.13 -1.86 8.08 -2.39 -0.02 -1.88 16 Total: 0.00 -37.76 432.48 2.54 -35.22 By element: Atomic # 1 Polarization: -20.43 SS G_CDS: -0.42 Total: -20.86 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 5.66 Total: 10.46 kcal Atomic # 7 Polarization: 3.75 SS G_CDS: -2.56 Total: 1.19 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -2.21 Total: -24.22 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: 2.07 Total: -1.79 kcal Total: -37.76 2.54 -35.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_4549636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.276 kcal (2) G-P(sol) polarization free energy of solvation -37.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds