Wall clock time and date at job start Sun Mar 7 2021 14:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00123 * 2 1 4 4 O 1.20823 * 120.00232 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00096 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47198 * 180.02562 * 5 3 2 7 7 H 1.08999 * 112.84915 * 316.19271 * 6 5 3 8 8 C 1.53780 * 113.69334 * 87.46463 * 6 5 3 9 9 C 1.53777 * 87.08498 * 139.98913 * 8 6 5 10 10 H 1.09007 * 113.69009 * 89.12362 * 9 8 6 11 11 N 1.46497 * 113.61648 * 220.02218 * 9 8 6 12 12 C 1.34777 * 119.99525 * 252.49385 * 11 9 8 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 9 15 15 O 1.42899 * 109.47143 * 180.27800 * 14 12 11 16 16 C 1.35901 * 116.99988 * 179.97438 * 15 14 12 17 17 C 1.38719 * 120.05341 * 179.97438 * 16 15 14 18 18 N 1.48003 * 120.02702 * 359.96367 * 17 16 15 19 19 O 1.21806 * 119.99540 * 179.97438 * 18 17 16 20 20 O 1.21794 * 120.00085 * 359.97438 * 18 17 16 21 21 C 1.38162 * 119.94173 * 179.97438 * 17 16 15 22 22 C 1.38244 * 120.05774 * 359.97438 * 21 17 16 23 23 C 1.50703 * 119.94464 * 179.97438 * 22 21 17 24 24 O 1.42895 * 109.47236 * 299.99805 * 23 22 21 25 25 Si 1.86308 * 109.46868 * 179.97438 * 23 22 21 26 26 C 1.38294 * 120.11102 * 0.02562 * 22 21 17 27 27 C 1.38123 * 120.05316 * 359.74961 * 26 22 21 28 28 C 1.53787 * 87.08211 * 334.56860 * 9 8 6 29 29 H 1.09000 * 109.46775 * 299.99528 * 1 2 3 30 30 H 1.08998 * 109.47276 * 59.99454 * 1 2 3 31 31 H 1.08996 * 109.47391 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46961 * 59.99708 * 5 3 2 33 33 H 1.09004 * 109.46770 * 300.00687 * 5 3 2 34 34 H 1.09004 * 113.61194 * 25.43805 * 8 6 5 35 35 H 1.08994 * 113.61618 * 254.54331 * 8 6 5 36 36 H 0.97000 * 120.00580 * 72.50131 * 11 9 8 37 37 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 38 38 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 39 39 H 1.08005 * 119.97303 * 180.02562 * 21 17 16 40 40 H 1.09003 * 109.46652 * 60.00314 * 23 22 21 41 41 H 0.96700 * 114.00364 * 300.00053 * 24 23 22 42 42 H 1.48497 * 109.99802 * 58.68444 * 25 23 22 43 43 H 1.48498 * 109.99484 * 180.02562 * 25 23 22 44 44 H 1.07999 * 119.96853 * 179.97438 * 26 22 21 45 45 H 1.08004 * 120.02437 * 180.27670 * 27 26 22 46 46 H 1.08997 * 113.61747 * 139.97438 * 28 9 8 47 47 H 1.08999 * 113.61375 * 270.88134 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4248 3.3538 -0.6945 8 6 4.1163 3.3513 1.4073 9 6 5.3816 4.0679 0.9072 10 1 5.1853 5.0426 0.4603 11 7 6.4652 4.1016 1.8925 12 6 6.7755 5.2568 2.5135 13 8 6.1574 6.2683 2.2571 14 6 7.8861 5.2902 3.5316 15 8 8.0178 6.6155 4.0495 16 6 8.9814 6.8190 4.9861 17 6 9.1647 8.0813 5.5312 18 7 8.3115 9.2084 5.0929 19 8 8.4728 10.3165 5.5724 20 8 7.4483 9.0280 4.2529 21 6 10.1447 8.2854 6.4836 22 6 10.9417 7.2330 6.8936 23 6 12.0102 7.4586 7.9321 24 8 12.9411 8.4317 7.4541 25 14 12.9013 5.8566 8.2645 26 6 10.7609 5.9736 6.3516 27 6 9.7795 5.7633 5.4026 28 6 5.5209 2.9347 -0.1231 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9557 0.7808 -0.8908 33 1 3.9564 0.7804 0.8891 34 1 4.3108 2.6150 2.1873 35 1 3.3007 4.0294 1.6581 36 1 6.9594 3.2926 2.0978 37 1 7.6536 4.6034 4.3456 38 1 8.8214 4.9902 3.0591 39 1 10.2876 9.2680 6.9087 40 1 11.5512 7.8167 8.8537 41 1 13.3884 8.1790 6.6349 42 1 13.5044 5.3410 7.0093 43 1 13.9572 6.0657 9.2875 44 1 11.3851 5.1531 6.6733 45 1 9.6358 4.7786 4.9829 46 1 5.8392 3.2766 -1.1079 47 1 6.0996 2.0847 0.2383 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17321982_4549638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:27:14 Heat of formation + Delta-G solvation = -124.240078 kcal Electronic energy + Delta-G solvation = -34071.083755 eV Core-core repulsion = 28998.214718 eV Total energy + Delta-G solvation = -5072.869037 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.144 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.02215 -41.86786 -41.61641 -40.97163 -39.95571 -39.09816 -37.64224 -37.41536 -37.12052 -34.96513 -33.52139 -32.43144 -31.86280 -29.97818 -28.41797 -27.59811 -26.88714 -26.76229 -24.90087 -23.86602 -22.82374 -22.07419 -21.69241 -20.72678 -20.46303 -19.44966 -19.25061 -18.64720 -18.43849 -18.34260 -18.29165 -17.87984 -17.67683 -17.54131 -17.28456 -16.92601 -16.55339 -16.37505 -16.22533 -15.81026 -15.73927 -15.29646 -14.98562 -14.96689 -14.52665 -14.15319 -14.13703 -13.86488 -13.81753 -13.70526 -13.49810 -13.31044 -13.03850 -12.93578 -12.57332 -12.55559 -12.26433 -12.19662 -12.02519 -11.99548 -11.84869 -11.78939 -11.73141 -11.53056 -11.40015 -10.98357 -10.94581 -10.90251 -10.20047 -9.92603 -5.23424 -1.13691 -0.39246 0.37737 0.53136 0.99161 1.07783 1.20631 1.31726 1.38914 1.69201 1.74401 1.92082 2.20490 2.95959 3.00733 3.14408 3.21002 3.25481 3.28775 3.39557 3.51496 3.54995 3.57322 3.59368 3.68772 3.69985 3.80285 4.12271 4.13917 4.14686 4.16784 4.20318 4.24839 4.32713 4.35692 4.42104 4.47479 4.56988 4.62603 4.66479 4.68284 4.84278 4.91638 4.97887 5.10889 5.34969 5.41105 5.46057 5.70320 6.14643 6.24245 6.73798 6.93789 7.02144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.457 3.543 4 O -0.502 6.502 5 C -0.102 4.102 6 C -0.100 4.100 7 H 0.109 0.891 8 C -0.147 4.147 9 C 0.126 3.874 10 H 0.121 0.879 11 N -0.718 5.718 12 C 0.513 3.487 13 O -0.494 6.494 14 C 0.030 3.970 15 O -0.253 6.253 16 C 0.200 3.800 17 C -0.076 4.076 18 N 0.028 4.972 19 O -0.177 6.177 20 O -0.117 6.117 21 C 0.009 3.991 22 C -0.156 4.156 23 C -0.072 4.072 24 O -0.525 6.525 25 Si 0.688 3.312 26 C -0.024 4.024 27 C -0.209 4.209 28 C -0.139 4.139 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.402 0.598 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.164 0.836 40 H 0.126 0.874 41 H 0.378 0.622 42 H -0.256 1.256 43 H -0.250 1.250 44 H 0.149 0.851 45 H 0.157 0.843 46 H 0.082 0.918 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 -13.422 0.916 14.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.300 3.700 4 O -0.389 6.389 5 C -0.139 4.139 6 C -0.119 4.119 7 H 0.127 0.873 8 C -0.186 4.186 9 C 0.021 3.979 10 H 0.139 0.861 11 N -0.371 5.371 12 C 0.297 3.703 13 O -0.366 6.366 14 C -0.048 4.048 15 O -0.162 6.162 16 C 0.150 3.850 17 C -0.160 4.160 18 N 0.548 4.452 19 O -0.386 6.386 20 O -0.341 6.341 21 C -0.010 4.010 22 C -0.158 4.158 23 C -0.182 4.182 24 O -0.331 6.331 25 Si 0.588 3.412 26 C -0.042 4.042 27 C -0.229 4.229 28 C -0.177 4.177 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.236 0.764 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.182 0.818 40 H 0.144 0.856 41 H 0.226 0.774 42 H -0.181 1.181 43 H -0.175 1.175 44 H 0.166 0.834 45 H 0.174 0.826 46 H 0.101 0.899 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.394 -12.807 1.403 13.612 hybrid contribution 0.317 0.316 -0.841 0.952 sum 4.711 -12.491 0.562 13.362 Atomic orbital electron populations 1.23302 0.75898 1.03940 1.02747 1.86499 1.23825 1.33541 1.84097 1.23811 0.92302 0.81414 0.72472 1.90705 1.67224 1.36292 1.44695 1.21396 0.87663 0.98805 1.06064 1.22251 0.96123 0.94236 0.99250 0.87319 1.23573 0.98377 1.00172 0.96452 1.22547 0.86133 1.00195 0.88990 0.86123 1.45777 1.37407 1.10854 1.43083 1.19862 0.84262 0.84180 0.81998 1.90874 1.50729 1.32888 1.62114 1.22753 1.00076 0.83985 0.98019 1.86510 1.49077 1.29681 1.50980 1.18704 0.87488 0.91576 0.87191 1.20591 1.02239 0.85696 1.07487 1.43340 1.00484 1.01564 0.99783 1.94559 1.75547 1.09725 1.58741 1.94701 1.25131 1.89998 1.24302 1.20840 0.88354 1.01547 0.90228 1.20256 1.00572 0.92929 1.02002 1.25073 0.91258 1.04333 0.97516 1.86658 1.57195 1.43614 1.45658 0.95180 0.84859 0.78842 0.82352 1.21264 0.94569 0.96542 0.91829 1.21265 0.99405 0.98870 1.03315 1.23438 0.95806 0.98365 1.00100 0.91757 0.91741 0.87912 0.87167 0.87459 0.89559 0.90196 0.76370 0.87967 0.88078 0.81811 0.85617 0.77421 1.18127 1.17491 0.83350 0.82590 0.89914 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.21 10.56 -39.25 -0.41 -0.62 16 3 C 0.46 0.31 7.96 36.01 0.29 0.60 16 4 O -0.50 -1.99 15.51 -18.75 -0.29 -2.28 16 5 C -0.10 0.32 5.65 -27.88 -0.16 0.16 16 6 C -0.10 0.25 3.15 -89.81 -0.28 -0.03 16 7 H 0.11 -0.08 7.68 -51.93 -0.40 -0.48 16 8 C -0.15 0.25 7.43 -25.92 -0.19 0.05 16 9 C 0.13 -0.24 4.24 -67.12 -0.28 -0.52 16 10 H 0.12 0.07 7.47 -51.93 -0.39 -0.32 16 11 N -0.72 2.28 5.35 -53.01 -0.28 1.99 16 12 C 0.51 0.13 7.91 -10.98 -0.09 0.04 16 13 O -0.49 -3.03 16.10 -14.36 -0.23 -3.26 16 14 C 0.03 -0.09 5.22 36.01 0.19 0.10 16 15 O -0.25 -0.51 7.68 -49.79 -0.38 -0.89 16 16 C 0.20 0.10 6.67 -39.22 -0.26 -0.16 16 17 C -0.08 -0.20 6.87 -79.81 -0.55 -0.75 16 18 N 0.03 0.19 4.45 34.03 0.15 0.34 16 19 O -0.18 -1.30 18.45 -29.46 -0.54 -1.84 16 20 O -0.12 -1.02 17.24 -36.49 -0.63 -1.65 16 21 C 0.01 0.00 9.11 -39.61 -0.36 -0.36 16 22 C -0.16 0.36 5.39 -104.60 -0.56 -0.21 16 23 C -0.07 0.20 2.82 36.01 0.10 0.30 16 24 O -0.52 0.39 12.77 -35.23 -0.45 -0.06 16 25 Si 0.69 -2.66 29.79 -169.99 -5.06 -7.72 16 26 C -0.02 0.10 8.66 -39.60 -0.34 -0.24 16 27 C -0.21 0.76 9.04 -39.44 -0.36 0.40 16 28 C -0.14 0.59 7.39 -25.91 -0.19 0.40 16 29 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 30 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 31 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 32 H 0.11 -0.53 8.14 -51.93 -0.42 -0.95 16 33 H 0.11 -0.53 7.85 -51.93 -0.41 -0.94 16 34 H 0.09 -0.26 7.90 -51.93 -0.41 -0.67 16 35 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.40 -2.78 8.73 -40.82 -0.36 -3.14 16 37 H 0.10 -0.64 7.65 -51.92 -0.40 -1.04 16 38 H 0.10 -0.63 7.68 -51.93 -0.40 -1.02 16 39 H 0.16 0.08 7.61 -52.48 -0.40 -0.32 16 40 H 0.13 -0.42 7.96 -51.93 -0.41 -0.83 16 41 H 0.38 -1.39 8.70 45.56 0.40 -0.99 16 42 H -0.26 0.61 7.11 56.52 0.40 1.02 16 43 H -0.25 0.00 7.11 56.52 0.40 0.40 16 44 H 0.15 -1.01 4.87 -52.49 -0.26 -1.27 16 45 H 0.16 -1.14 6.30 -52.48 -0.33 -1.47 16 46 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 47 H 0.09 -0.57 8.08 -51.93 -0.42 -0.99 16 LS Contribution 407.48 15.07 6.14 6.14 Total: 0.00 -15.00 407.48 -9.89 -24.89 By element: Atomic # 1 Polarization: -9.94 SS G_CDS: -5.91 Total: -15.85 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.99 Total: 0.81 kcal Atomic # 7 Polarization: 2.46 SS G_CDS: -0.13 Total: 2.33 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -2.94 Total: -10.60 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: -5.06 Total: -7.72 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -15.00 -9.89 -24.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_4549638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.350 kcal (2) G-P(sol) polarization free energy of solvation -14.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds