Wall clock time and date at job start Sun Mar 7 2021 14:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47581 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.84811 * 43.79680 * 6 5 3 8 8 C 1.53776 * 113.62044 * 174.99953 * 6 5 3 9 9 C 1.53781 * 87.08638 * 139.97658 * 8 6 5 10 10 H 1.08995 * 113.60861 * 89.19777 * 9 8 6 11 11 N 1.46498 * 113.61382 * 220.02313 * 9 8 6 12 12 C 1.34774 * 119.99625 * 205.00117 * 11 9 8 13 13 O 1.21282 * 119.99991 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00042 * 179.97438 * 12 11 9 15 15 O 1.42899 * 109.47222 * 179.97438 * 14 12 11 16 16 C 1.35909 * 117.00233 * 179.97438 * 15 14 12 17 17 C 1.38702 * 120.05716 * 179.97438 * 16 15 14 18 18 C 1.38172 * 119.94510 * 180.02562 * 17 16 15 19 19 C 1.50699 * 119.97168 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47451 * 65.00248 * 19 18 17 21 21 Si 1.86302 * 109.46698 * 185.00123 * 19 18 17 22 22 C 1.38240 * 120.04997 * 0.02562 * 18 17 16 23 23 C 1.38285 * 120.11937 * 359.97438 * 22 18 17 24 24 C 1.38125 * 120.05082 * 359.76583 * 23 22 18 25 25 C 1.53778 * 87.07826 * 334.56876 * 9 8 6 26 26 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 27 27 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 29 29 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 30 30 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 31 31 H 1.08999 * 113.61219 * 254.53069 * 8 6 5 32 32 H 1.09010 * 113.61212 * 25.34120 * 8 6 5 33 33 H 0.96995 * 120.00579 * 24.99464 * 11 9 8 34 34 H 1.09000 * 109.46966 * 299.99782 * 14 12 11 35 35 H 1.08998 * 109.47427 * 59.99760 * 14 12 11 36 36 H 1.08005 * 120.03066 * 359.97438 * 17 16 15 37 37 H 1.09004 * 109.47055 * 305.00065 * 19 18 17 38 38 H 0.96693 * 114.00028 * 179.97438 * 20 19 18 39 39 H 1.48494 * 110.00251 * 300.00110 * 21 19 18 40 40 H 1.48504 * 110.00128 * 61.32215 * 21 19 18 41 41 H 1.08002 * 119.93954 * 179.97438 * 22 18 17 42 42 H 1.07995 * 119.97861 * 180.02562 * 23 22 18 43 43 H 1.08001 * 120.02978 * 180.27652 * 24 23 22 44 44 H 1.09007 * 113.61587 * 270.88136 * 25 9 8 45 45 H 1.09000 * 113.61680 * 139.97923 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4252 3.3531 0.6960 8 6 5.5209 2.9348 0.1225 9 6 5.3811 4.0677 -0.9080 10 1 5.1851 5.0424 -0.4612 11 7 6.4641 4.1011 -1.8940 12 6 6.7741 5.2561 -2.5155 13 8 6.1563 6.2676 -2.2588 14 6 7.8885 5.2906 -3.5293 15 8 8.0230 6.6168 -4.0443 16 6 8.9910 6.8216 -4.9761 17 6 9.1765 8.0844 -5.5190 18 6 10.1609 8.2900 -6.4666 19 6 10.3627 9.6617 -7.0572 20 8 10.7998 10.5605 -6.0360 21 14 11.6498 9.5757 -8.4014 22 6 10.9601 7.2382 -6.8739 23 6 10.7772 5.9782 -6.3342 24 6 9.7981 5.7687 -5.3828 25 6 4.1155 3.3511 -1.4072 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.9564 0.7806 0.8893 30 1 3.9558 0.7809 -0.8907 31 1 5.8399 3.2769 1.1070 32 1 6.0993 2.0839 -0.2378 33 1 6.9581 3.2920 -2.0994 34 1 8.8218 4.9887 -3.0539 35 1 7.6586 4.6059 -4.3456 36 1 8.5515 8.9063 -5.2020 37 1 9.4221 10.0184 -7.4770 38 1 10.9504 11.4641 -6.3454 39 1 12.9369 9.0906 -7.8419 40 1 11.1929 8.6686 -9.4848 41 1 11.7288 7.4008 -7.6150 42 1 11.4031 5.1582 -6.6538 43 1 9.6584 4.7855 -4.9583 44 1 4.3095 2.6146 -2.1871 45 1 3.2997 4.0292 -1.6576 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:27:24 Heat of formation + Delta-G solvation = -132.868904 kcal Electronic energy + Delta-G solvation = -27503.862952 eV Core-core repulsion = 23261.636177 eV Total energy + Delta-G solvation = -4242.226775 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.82142 -41.55339 -40.89465 -39.64335 -38.79377 -37.51717 -37.30747 -34.97692 -32.70394 -32.06422 -31.47187 -29.40764 -28.30158 -26.84504 -26.71773 -24.60757 -23.82341 -22.65422 -21.78502 -21.64977 -20.53284 -19.23052 -18.64752 -18.44387 -18.26696 -17.89938 -17.61486 -17.57134 -17.47247 -17.15710 -16.65690 -16.19392 -15.87899 -15.69626 -15.44315 -14.89811 -14.85491 -14.63573 -14.51435 -14.35381 -13.98842 -13.85222 -13.67683 -13.49866 -13.38265 -13.25958 -12.94748 -12.83854 -12.45067 -12.28975 -12.19648 -12.15103 -11.89382 -11.85634 -11.82654 -11.50259 -11.35564 -11.01657 -10.40130 -10.16333 -10.01568 -9.43248 -4.93092 0.06355 0.22170 1.16784 1.25113 1.37286 1.44524 1.65563 1.77904 1.95772 2.49391 2.54426 3.38081 3.40656 3.44531 3.49554 3.70655 3.75154 3.78668 3.79936 3.85694 3.88892 3.95939 4.03942 4.14552 4.18059 4.24166 4.26059 4.28774 4.38283 4.46169 4.55467 4.61797 4.67701 4.72572 4.77107 4.84144 4.84684 4.98680 5.07443 5.07817 5.18389 5.20748 5.28997 5.39571 5.51038 5.55935 6.17518 6.43506 6.70383 6.86813 7.09930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.095 4.095 6 C -0.099 4.099 7 H 0.083 0.917 8 C -0.114 4.114 9 C 0.115 3.885 10 H 0.086 0.914 11 N -0.695 5.695 12 C 0.511 3.489 13 O -0.577 6.577 14 C 0.036 3.964 15 O -0.320 6.320 16 C 0.120 3.880 17 C -0.146 4.146 18 C -0.052 4.052 19 C -0.092 4.092 20 O -0.566 6.566 21 Si 0.788 3.212 22 C -0.181 4.181 23 C -0.071 4.071 24 C -0.200 4.200 25 C -0.148 4.148 26 H 0.057 0.943 27 H 0.128 0.872 28 H 0.058 0.942 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.424 0.576 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.404 0.596 39 H -0.291 1.291 40 H -0.285 1.285 41 H 0.123 0.877 42 H 0.160 0.840 43 H 0.169 0.831 44 H 0.107 0.893 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -7.761 -2.047 9.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.436 6.436 5 C -0.132 4.132 6 C -0.118 4.118 7 H 0.102 0.898 8 C -0.152 4.152 9 C 0.010 3.990 10 H 0.104 0.896 11 N -0.348 5.348 12 C 0.297 3.703 13 O -0.455 6.455 14 C -0.042 4.042 15 O -0.233 6.233 16 C 0.075 3.925 17 C -0.165 4.165 18 C -0.053 4.053 19 C -0.200 4.200 20 O -0.376 6.376 21 Si 0.693 3.307 22 C -0.198 4.198 23 C -0.089 4.089 24 C -0.219 4.219 25 C -0.187 4.187 26 H 0.076 0.924 27 H 0.147 0.853 28 H 0.077 0.923 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.104 0.896 32 H 0.144 0.856 33 H 0.263 0.737 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.255 0.745 39 H -0.219 1.219 40 H -0.212 1.212 41 H 0.140 0.860 42 H 0.178 0.822 43 H 0.186 0.814 44 H 0.125 0.875 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.155 -7.651 -1.857 8.903 hybrid contribution -0.959 -0.186 0.350 1.038 sum 3.196 -7.837 -1.506 8.597 Atomic orbital electron populations 1.23472 0.75403 1.05466 1.02175 1.86508 1.24515 1.33484 1.83809 1.24653 0.93780 0.80776 0.70995 1.90694 1.68434 1.37600 1.46872 1.21541 0.84789 0.98289 1.08549 1.22147 0.97296 0.94616 0.97763 0.89835 1.23363 0.94545 0.97942 0.99356 1.22475 0.86766 0.99635 0.90160 0.89594 1.45632 1.36639 1.11003 1.41572 1.20609 0.84105 0.83720 0.81829 1.90770 1.54002 1.35688 1.65080 1.22796 0.99440 0.84035 0.97916 1.86136 1.51821 1.31301 1.54053 1.19185 0.88974 0.94708 0.89664 1.20348 1.01119 0.95548 0.99458 1.19490 0.94705 0.94989 0.96071 1.25067 1.08218 0.88243 0.98500 1.86451 1.89769 1.24686 1.36660 0.94203 0.74563 0.87400 0.74530 1.21053 1.00963 0.94484 1.03326 1.21260 0.96553 0.96852 0.94224 1.21629 0.98487 0.99611 1.02132 1.23604 0.97140 1.00094 0.97820 0.92408 0.85344 0.92315 0.84560 0.84663 0.89574 0.85563 0.73674 0.85468 0.85454 0.85969 0.89343 0.74523 1.21876 1.21190 0.85997 0.82214 0.81374 0.87516 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.59 10.57 -51.35 -0.54 -1.13 16 3 C 0.45 1.09 7.96 71.23 0.57 1.66 16 4 O -0.55 -5.73 15.51 21.94 0.34 -5.39 16 5 C -0.09 0.66 5.65 29.85 0.17 0.82 16 6 C -0.10 0.38 3.15 -10.27 -0.03 0.35 16 7 H 0.08 0.12 7.68 -2.39 -0.02 0.10 16 8 C -0.11 0.99 7.39 31.12 0.23 1.22 16 9 C 0.11 -0.17 4.24 45.52 0.19 0.03 16 10 H 0.09 0.49 7.46 -2.39 -0.02 0.47 16 11 N -0.69 3.02 5.35 -440.06 -2.36 0.67 16 12 C 0.51 2.10 7.91 87.66 0.69 2.79 16 13 O -0.58 -9.80 16.10 16.00 0.26 -9.54 16 14 C 0.04 -0.06 5.22 71.23 0.37 0.31 16 15 O -0.32 -2.85 9.67 -73.48 -0.71 -3.56 16 16 C 0.12 0.88 6.69 22.50 0.15 1.03 16 17 C -0.15 -1.48 9.62 22.37 0.22 -1.26 16 18 C -0.05 -0.41 5.38 -19.88 -0.11 -0.52 16 19 C -0.09 -0.23 2.79 71.24 0.20 -0.03 16 20 O -0.57 -1.86 12.81 -148.98 -1.91 -3.77 16 21 Si 0.79 -0.91 29.85 68.60 2.05 1.13 16 22 C -0.18 -1.03 8.67 22.28 0.19 -0.84 16 23 C -0.07 -0.10 10.04 22.25 0.22 0.13 16 24 C -0.20 -0.15 9.04 22.37 0.20 0.05 16 25 C -0.15 0.17 7.43 31.12 0.23 0.40 16 26 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 27 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 29 H 0.14 -1.58 8.14 -2.38 -0.02 -1.60 16 30 H 0.14 -1.62 7.84 -2.39 -0.02 -1.64 16 31 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.13 -1.90 8.08 -2.38 -0.02 -1.92 16 33 H 0.42 -5.70 8.73 -92.71 -0.81 -6.51 16 34 H 0.13 -1.08 7.65 -2.39 -0.02 -1.10 16 35 H 0.13 -1.10 7.67 -2.39 -0.02 -1.12 16 36 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.09 -0.05 7.96 -2.38 -0.02 -0.07 16 38 H 0.40 -3.15 8.74 -74.06 -0.65 -3.80 16 39 H -0.29 -1.58 7.05 99.48 0.70 -0.88 16 40 H -0.28 -1.03 7.11 99.48 0.71 -0.32 16 41 H 0.12 0.53 4.86 -2.91 -0.01 0.52 16 42 H 0.16 -0.80 8.06 -2.91 -0.02 -0.82 16 43 H 0.17 -1.29 6.30 -2.91 -0.02 -1.31 16 44 H 0.11 -0.58 7.90 -2.38 -0.02 -0.60 16 45 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 Total: 0.00 -36.34 381.57 1.43 -34.91 By element: Atomic # 1 Polarization: -20.22 SS G_CDS: -0.39 Total: -20.61 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 4.70 Total: 7.30 kcal Atomic # 7 Polarization: 3.02 SS G_CDS: -2.36 Total: 0.67 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -2.56 Total: -23.40 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: 2.05 Total: 1.13 kcal Total: -36.34 1.43 -34.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.963 kcal (2) G-P(sol) polarization free energy of solvation -36.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds