Wall clock time and date at job start Sun Mar 7 2021 14:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 116.99856 * 2 1 4 4 O 1.20821 * 119.99857 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99740 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47018 * 180.02562 * 5 3 2 7 7 H 1.09003 * 112.84878 * 43.80429 * 6 5 3 8 8 C 1.53782 * 113.61716 * 175.00073 * 6 5 3 9 9 C 1.53783 * 87.08357 * 140.06334 * 8 6 5 10 10 H 1.08993 * 113.61242 * 89.19573 * 9 8 6 11 11 N 1.46497 * 113.61381 * 220.02048 * 9 8 6 12 12 C 1.34777 * 119.99525 * 203.46726 * 11 9 8 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 9 15 15 O 1.42899 * 109.47143 * 180.27800 * 14 12 11 16 16 C 1.35987 * 117.00157 * 179.97438 * 15 14 12 17 17 C 1.38678 * 120.00144 * 179.97438 * 16 15 14 18 18 C 1.50707 * 119.99821 * 359.97438 * 17 16 15 19 19 O 1.42904 * 109.47050 * 74.99571 * 18 17 16 20 20 Si 1.86298 * 109.46768 * 194.99682 * 18 17 16 21 21 C 1.38155 * 119.99952 * 180.02562 * 17 16 15 22 22 C 1.38673 * 119.99998 * 0.02562 * 21 17 16 23 23 O 1.35978 * 119.99957 * 180.02562 * 22 21 17 24 24 C 1.42898 * 117.00070 * 180.02562 * 23 22 21 25 25 C 1.38715 * 119.99970 * 359.97438 * 22 21 17 26 26 C 1.38112 * 120.00440 * 359.71930 * 25 22 21 27 27 C 1.53788 * 87.16978 * 334.61167 * 9 8 6 28 28 H 1.09007 * 109.46741 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47361 * 299.99781 * 1 2 3 30 30 H 1.09001 * 109.47108 * 60.00276 * 1 2 3 31 31 H 1.08997 * 109.47190 * 60.00327 * 5 3 2 32 32 H 1.09000 * 109.47587 * 299.99929 * 5 3 2 33 33 H 1.09004 * 113.61315 * 25.51455 * 8 6 5 34 34 H 1.09001 * 113.61460 * 254.61757 * 8 6 5 35 35 H 0.97000 * 120.00580 * 23.47472 * 11 9 8 36 36 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 37 37 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 38 38 H 1.08993 * 109.47202 * 314.99876 * 18 17 16 39 39 H 0.96695 * 114.00284 * 300.00252 * 19 18 17 40 40 H 1.48498 * 110.00106 * 298.67661 * 20 18 17 41 41 H 1.48497 * 110.00221 * 60.00199 * 20 18 17 42 42 H 1.07995 * 119.99433 * 180.02562 * 21 17 16 43 43 H 1.08997 * 109.47399 * 59.99613 * 24 23 22 44 44 H 1.09003 * 109.47285 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.47048 * 299.99451 * 24 23 22 46 46 H 1.07999 * 120.00191 * 180.02562 * 25 22 21 47 47 H 1.07992 * 120.00639 * 180.29750 * 26 25 22 48 48 H 1.08996 * 113.61247 * 139.94201 * 27 9 8 49 49 H 1.09002 * 113.61228 * 270.83771 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.4246 3.3534 0.6963 8 6 5.5207 2.9349 0.1245 9 6 5.3814 4.0689 -0.9048 10 1 5.1849 5.0431 -0.4572 11 7 6.4649 4.1036 -1.8901 12 6 6.7548 5.2522 -2.5328 13 8 6.1189 6.2573 -2.2951 14 6 7.8735 5.2894 -3.5419 15 8 7.9885 6.6093 -4.0771 16 6 8.9580 6.8158 -5.0080 17 6 9.1242 8.0730 -5.5691 18 6 8.2300 9.2105 -5.1475 19 8 8.6195 9.6672 -3.8506 20 14 8.3842 10.6076 -6.3702 21 6 10.1089 8.2826 -6.5152 22 6 10.9307 7.2355 -6.9043 23 8 11.9002 7.4419 -7.8351 24 6 12.7096 6.3186 -8.1889 25 6 10.7644 5.9779 -6.3431 26 6 9.7842 5.7699 -5.3926 27 6 4.1150 3.3550 -1.4065 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9563 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 6.0994 2.0851 -0.2377 34 1 5.8391 3.2760 1.1096 35 1 6.9737 3.2998 -2.0800 36 1 8.8094 5.0110 -3.0572 37 1 7.6591 4.5878 -4.3481 38 1 7.1959 8.8674 -5.1164 39 1 8.5640 8.9904 -3.1622 40 1 9.7829 11.1056 -6.3986 41 1 7.9820 10.1455 -7.7229 42 1 10.2385 9.2618 -6.9518 43 1 12.0775 5.5287 -8.5945 44 1 13.4408 6.6196 -8.9391 45 1 13.2275 5.9507 -7.3033 46 1 11.4047 5.1626 -6.6457 47 1 9.6579 4.7920 -4.9522 48 1 3.3003 4.0348 -1.6557 49 1 4.3087 2.6203 -2.1881 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_4974302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:27:28 Heat of formation + Delta-G solvation = -169.365889 kcal Electronic energy + Delta-G solvation = -32316.599967 eV Core-core repulsion = 27598.570753 eV Total energy + Delta-G solvation = -4718.029214 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.165 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.94723 -41.68334 -41.05775 -40.17183 -39.32029 -38.12832 -37.49973 -37.00016 -34.92455 -32.93237 -31.83971 -31.02751 -29.46910 -28.33675 -28.03685 -26.69680 -26.64767 -24.80210 -23.62892 -22.50255 -21.99707 -21.61883 -20.52030 -19.62937 -18.90536 -18.67717 -18.44159 -18.08829 -17.82725 -17.59745 -17.52928 -17.44488 -16.91074 -16.74453 -16.23137 -16.06342 -15.78104 -15.63276 -15.54581 -15.31637 -14.82438 -14.72636 -14.49601 -14.17382 -14.01371 -13.91005 -13.62650 -13.50912 -13.46530 -13.35714 -13.11753 -12.93048 -12.81362 -12.57498 -12.37020 -12.23889 -12.15350 -11.87588 -11.81776 -11.54481 -11.48571 -11.33784 -11.28742 -11.13617 -10.94538 -10.24890 -10.11638 -8.94313 -4.88016 -0.07820 0.20566 1.18030 1.30689 1.42601 1.44064 1.57774 1.79129 1.88096 2.22153 2.41776 2.56414 3.40996 3.43295 3.46836 3.50060 3.62812 3.76910 3.80828 3.82278 3.90468 3.92298 3.98131 4.03201 4.08521 4.12029 4.25106 4.26223 4.27083 4.30837 4.33320 4.33447 4.47806 4.56232 4.63455 4.67630 4.68710 4.74770 4.79675 4.86637 4.86957 5.00034 5.01542 5.06827 5.10205 5.24117 5.28761 5.41198 5.57323 6.06198 6.30379 6.47574 6.52778 6.71552 7.15000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.452 3.548 4 O -0.545 6.545 5 C -0.095 4.095 6 C -0.100 4.100 7 H 0.083 0.917 8 C -0.114 4.114 9 C 0.117 3.883 10 H 0.087 0.913 11 N -0.697 5.697 12 C 0.512 3.488 13 O -0.572 6.572 14 C 0.036 3.964 15 O -0.311 6.311 16 C 0.097 3.903 17 C -0.119 4.119 18 C -0.085 4.085 19 O -0.544 6.544 20 Si 0.811 3.189 21 C -0.143 4.143 22 C 0.088 3.912 23 O -0.342 6.342 24 C 0.017 3.983 25 C -0.158 4.158 26 C -0.153 4.153 27 C -0.148 4.148 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.423 0.577 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.372 0.628 40 H -0.286 1.286 41 H -0.267 1.267 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.070 0.930 46 H 0.167 0.833 47 H 0.176 0.824 48 H 0.043 0.957 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -12.394 0.593 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.298 3.702 4 O -0.435 6.435 5 C -0.132 4.132 6 C -0.119 4.119 7 H 0.101 0.899 8 C -0.152 4.152 9 C 0.012 3.988 10 H 0.105 0.895 11 N -0.350 5.350 12 C 0.298 3.702 13 O -0.450 6.450 14 C -0.042 4.042 15 O -0.225 6.225 16 C 0.052 3.948 17 C -0.120 4.120 18 C -0.193 4.193 19 O -0.351 6.351 20 Si 0.712 3.288 21 C -0.161 4.161 22 C 0.043 3.957 23 O -0.257 6.257 24 C -0.077 4.077 25 C -0.177 4.177 26 C -0.172 4.172 27 C -0.187 4.187 28 H 0.146 0.854 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.105 0.895 35 H 0.262 0.738 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.095 0.905 39 H 0.220 0.780 40 H -0.213 1.213 41 H -0.193 1.193 42 H 0.141 0.859 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.088 0.912 46 H 0.184 0.816 47 H 0.194 0.806 48 H 0.062 0.938 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.470 -10.272 -0.295 10.847 hybrid contribution 0.050 -1.760 0.340 1.793 sum 3.520 -12.032 0.045 12.537 Atomic orbital electron populations 1.23467 0.75425 1.05447 1.02175 1.86508 1.24500 1.33523 1.83822 1.24664 0.93799 0.80768 0.71005 1.90691 1.68424 1.37593 1.46842 1.21542 0.84755 0.98388 1.08490 1.22184 0.97371 0.94508 0.97829 0.89870 1.23354 0.94448 0.97968 0.99427 1.22440 0.86665 0.99584 0.90074 0.89491 1.45641 1.36326 1.11891 1.41181 1.20568 0.84273 0.83605 0.81767 1.90780 1.53036 1.35707 1.65459 1.22784 0.99463 0.84311 0.97644 1.86099 1.51195 1.31582 1.53612 1.18703 0.90565 0.93603 0.91934 1.19552 0.98933 0.94616 0.98938 1.25376 0.97927 1.03593 0.92400 1.86651 1.90335 1.40945 1.17125 0.92485 0.81264 0.82507 0.72528 1.20149 0.96891 0.98692 1.00360 1.18985 0.90706 0.94186 0.91838 1.86078 1.44595 1.39587 1.55391 1.23391 0.94326 0.88048 1.01963 1.21441 1.01155 0.96134 0.98950 1.21474 0.96152 0.99696 0.99850 1.23627 0.97303 1.00076 0.97715 0.85378 0.92324 0.92398 0.84727 0.84606 0.85643 0.89528 0.73786 0.85406 0.85773 0.90498 0.77970 1.21303 1.19266 0.85921 0.91120 0.86767 0.91155 0.81599 0.80642 0.93790 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.55 113.37 1.20 1.16 16 2 O -0.37 -0.41 10.57 -51.43 -0.54 -0.95 16 3 C 0.45 0.81 7.96 71.24 0.57 1.38 16 4 O -0.55 -5.38 15.51 21.98 0.34 -5.04 16 5 C -0.09 0.73 5.65 29.85 0.17 0.89 16 6 C -0.10 0.48 3.15 -10.21 -0.03 0.45 16 7 H 0.08 0.04 7.68 -2.39 -0.02 0.02 16 8 C -0.11 1.14 7.39 31.12 0.23 1.37 16 9 C 0.12 -0.38 4.21 45.52 0.19 -0.19 16 10 H 0.09 0.32 7.50 -2.39 -0.02 0.30 16 11 N -0.70 4.62 5.36 -440.03 -2.36 2.26 16 12 C 0.51 0.45 7.91 87.66 0.69 1.14 16 13 O -0.57 -7.52 16.12 16.00 0.26 -7.26 16 14 C 0.04 -0.19 5.22 71.24 0.37 0.18 16 15 O -0.31 -1.30 8.56 -74.36 -0.64 -1.94 16 16 C 0.10 0.42 6.62 22.49 0.15 0.57 16 17 C -0.12 -1.05 5.28 -19.78 -0.10 -1.15 16 18 C -0.09 -0.75 2.33 71.24 0.17 -0.58 16 19 O -0.54 -5.66 12.65 -148.98 -1.89 -7.55 16 20 Si 0.81 5.04 30.40 68.60 2.09 7.12 16 21 C -0.14 -1.43 8.59 22.35 0.19 -1.24 16 22 C 0.09 0.57 6.68 22.49 0.15 0.72 16 23 O -0.34 -2.15 10.50 -93.30 -0.98 -3.13 16 24 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 25 C -0.16 0.04 9.03 22.35 0.20 0.24 16 26 C -0.15 0.29 9.03 22.36 0.20 0.49 16 27 C -0.15 0.34 7.45 31.18 0.23 0.58 16 28 H 0.13 -0.91 8.14 -2.38 -0.02 -0.93 16 29 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 30 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 31 H 0.13 -1.71 7.86 -2.39 -0.02 -1.73 16 32 H 0.14 -1.66 8.14 -2.39 -0.02 -1.68 16 33 H 0.13 -2.04 8.07 -2.38 -0.02 -2.06 16 34 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H 0.42 -6.52 8.71 -92.71 -0.81 -7.33 16 36 H 0.13 -1.54 7.65 -2.38 -0.02 -1.56 16 37 H 0.12 -1.43 7.67 -2.39 -0.02 -1.44 16 38 H 0.08 0.66 7.82 -2.39 -0.02 0.64 16 39 H 0.37 2.86 8.60 -74.06 -0.64 2.22 16 40 H -0.29 -3.32 6.81 99.48 0.68 -2.64 16 41 H -0.27 -2.32 7.11 99.48 0.71 -1.61 16 42 H 0.12 1.43 4.93 -2.91 -0.01 1.41 16 43 H 0.07 -0.46 7.66 -2.39 -0.02 -0.48 16 44 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 45 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 46 H 0.17 -1.14 6.29 -2.91 -0.02 -1.16 16 47 H 0.18 -1.91 6.29 -2.91 -0.02 -1.93 16 48 H 0.04 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.10 -0.67 7.91 -2.39 -0.02 -0.69 16 Total: 0.00 -33.53 409.73 1.54 -32.00 By element: Atomic # 1 Polarization: -22.16 SS G_CDS: -0.43 Total: -22.59 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.69 Total: 7.07 kcal Atomic # 7 Polarization: 4.62 SS G_CDS: -2.36 Total: 2.26 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -3.45 Total: -25.86 kcal Atomic # 14 Polarization: 5.04 SS G_CDS: 2.09 Total: 7.12 kcal Total: -33.53 1.54 -32.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_4974302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.369 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds