Wall clock time and date at job start Sun Mar 7 2021 14:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99949 * 2 1 4 4 O 1.20832 * 120.00245 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00128 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47162 * 180.02562 * 5 3 2 7 7 H 1.08997 * 112.85371 * 316.19778 * 6 5 3 8 8 C 1.53958 * 113.66316 * 87.44440 * 6 5 3 9 9 C 1.53784 * 87.02152 * 139.93193 * 8 6 5 10 10 H 1.08999 * 113.61356 * 89.22259 * 9 8 6 11 11 N 1.46494 * 113.61384 * 220.04933 * 9 8 6 12 12 C 1.34784 * 119.99635 * 254.13439 * 11 9 8 13 13 O 1.21690 * 119.99870 * 0.02562 * 12 11 9 14 14 C 1.46682 * 119.99794 * 180.02562 * 12 11 9 15 15 C 1.37866 * 126.23300 * 180.02562 * 14 12 11 16 16 C 1.39828 * 107.08940 * 180.02562 * 15 14 12 17 17 C 1.35460 * 107.86222 * 359.97438 * 16 15 14 18 18 C 1.50700 * 125.56140 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.46859 * 120.02432 * 18 17 16 20 20 Si 1.86294 * 109.47473 * 0.02562 * 18 17 16 21 21 N 1.35531 * 108.86753 * 359.73272 * 17 16 15 22 22 C 1.53779 * 113.61334 * 184.99885 * 6 5 3 23 23 H 1.08994 * 109.47171 * 299.99214 * 1 2 3 24 24 H 1.09001 * 109.47266 * 59.99963 * 1 2 3 25 25 H 1.09004 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46934 * 60.00372 * 5 3 2 27 27 H 1.09003 * 109.47022 * 300.00548 * 5 3 2 28 28 H 1.08999 * 113.61805 * 25.40713 * 8 6 5 29 29 H 1.09004 * 113.66630 * 254.46106 * 8 6 5 30 30 H 0.96995 * 120.00292 * 74.40872 * 11 9 8 31 31 H 1.08004 * 126.45472 * 359.95819 * 15 14 12 32 32 H 1.07996 * 126.07201 * 179.97438 * 16 15 14 33 33 H 1.09005 * 109.46851 * 240.02412 * 18 17 16 34 34 H 0.96695 * 114.00657 * 299.99420 * 19 18 17 35 35 H 1.48505 * 109.99678 * 58.68315 * 20 18 17 36 36 H 1.48499 * 110.00122 * 180.02562 * 20 18 17 37 37 H 0.97005 * 125.67519 * 180.30328 * 21 17 16 38 38 H 1.09004 * 113.61387 * 105.47404 * 22 6 5 39 39 H 1.09002 * 113.69178 * 334.57963 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.4246 3.3540 -0.6944 8 6 4.1156 3.3516 1.4093 9 6 5.3818 4.0666 0.9089 10 1 5.1854 5.0419 0.4636 11 7 6.4656 4.0987 1.8940 12 6 6.7558 5.2459 2.5394 13 8 6.1172 6.2547 2.3041 14 6 7.8413 5.2782 3.5254 15 6 8.2454 6.3748 4.2568 16 6 9.3055 5.9593 5.0685 17 6 9.5252 4.6451 4.8247 18 6 10.5801 3.7955 5.4853 19 8 9.9550 2.7121 6.1764 20 14 11.5430 4.8320 6.6974 21 7 8.6380 4.2178 3.8934 22 6 5.5208 2.9350 -0.1231 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.9557 0.7810 -0.8909 27 1 3.9564 0.7805 0.8891 28 1 4.3093 2.6151 2.1891 29 1 3.3009 4.0309 1.6603 30 1 6.9769 3.2955 2.0789 31 1 7.8235 7.3679 4.2106 32 1 9.8520 6.5766 5.7661 33 1 11.2563 3.4010 4.7269 34 1 9.3384 2.9897 6.8674 35 1 10.6273 5.4017 7.7183 36 1 12.5869 4.0058 7.3552 37 1 8.5763 3.3154 3.5429 38 1 5.8389 3.2784 -1.1075 39 1 6.1006 2.0849 0.2365 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_6580494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:27:49 Heat of formation + Delta-G solvation = -85.922324 kcal Electronic energy + Delta-G solvation = -23043.798371 eV Core-core repulsion = 19340.627393 eV Total energy + Delta-G solvation = -3703.170978 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.54308 -41.69644 -40.79683 -39.30858 -37.81367 -37.52236 -35.02043 -32.30061 -31.75849 -31.09588 -28.47837 -27.02781 -26.74738 -24.77142 -23.05675 -21.89441 -21.45218 -21.28667 -20.66704 -19.71190 -18.61171 -18.16494 -17.91354 -17.59195 -17.08703 -16.68502 -16.39157 -16.16787 -16.01753 -15.30282 -15.14393 -14.94932 -14.54048 -14.46814 -14.38305 -13.97953 -13.90295 -13.68771 -13.52123 -13.39584 -12.96193 -12.83845 -12.34578 -12.23518 -11.92240 -11.89665 -11.84266 -11.52462 -11.39359 -11.27651 -10.83159 -10.24116 -10.07155 -9.28008 -4.82043 0.28771 1.15488 1.23341 1.55350 1.70838 1.73678 1.90253 2.03447 2.22613 2.25504 3.35319 3.38476 3.44042 3.59667 3.70453 3.75221 3.82673 3.87485 4.22771 4.25043 4.25884 4.26691 4.34809 4.44112 4.52667 4.59652 4.66518 4.68951 4.75625 4.81916 4.93754 4.97838 5.05299 5.11601 5.18817 5.37906 5.49675 5.59548 5.78899 6.28775 6.40554 6.46947 6.69117 7.03723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.544 6.544 5 C -0.096 4.096 6 C -0.096 4.096 7 H 0.087 0.913 8 C -0.148 4.148 9 C 0.116 3.884 10 H 0.093 0.907 11 N -0.704 5.704 12 C 0.587 3.413 13 O -0.574 6.574 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.206 4.206 17 C 0.033 3.967 18 C -0.061 4.061 19 O -0.548 6.548 20 Si 0.792 3.208 21 N -0.510 5.510 22 C -0.116 4.116 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.128 0.872 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.412 0.588 31 H 0.143 0.857 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.389 0.611 35 H -0.285 1.285 36 H -0.298 1.298 37 H 0.429 0.571 38 H 0.089 0.911 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -6.226 -0.934 8.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.115 4.115 7 H 0.106 0.894 8 C -0.187 4.187 9 C 0.011 3.989 10 H 0.111 0.889 11 N -0.354 5.354 12 C 0.376 3.624 13 O -0.454 6.454 14 C -0.177 4.177 15 C -0.147 4.147 16 C -0.229 4.229 17 C -0.086 4.086 18 C -0.169 4.169 19 O -0.356 6.356 20 Si 0.696 3.304 21 N -0.108 5.108 22 C -0.154 4.154 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.146 0.854 26 H 0.155 0.845 27 H 0.150 0.850 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.249 0.751 31 H 0.161 0.839 32 H 0.185 0.815 33 H 0.155 0.845 34 H 0.239 0.761 35 H -0.211 1.211 36 H -0.226 1.226 37 H 0.269 0.731 38 H 0.108 0.892 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.921 -5.640 -0.796 7.527 hybrid contribution -1.591 -0.842 0.411 1.846 sum 3.330 -6.482 -0.385 7.297 Atomic orbital electron populations 1.23472 0.75366 1.05459 1.02211 1.86508 1.24548 1.33476 1.83810 1.24607 0.93700 0.80808 0.71040 1.90691 1.68384 1.37542 1.46808 1.21536 0.84941 0.98386 1.08398 1.22171 0.97136 0.94557 0.97673 0.89418 1.23617 0.97338 1.00059 0.97707 1.22518 0.86493 0.99931 0.89963 0.88887 1.45726 1.36343 1.11678 1.41674 1.17332 0.81722 0.83548 0.79839 1.90848 1.52763 1.35404 1.66349 1.20281 1.00785 0.90124 1.06535 1.21489 0.98025 0.98137 0.97016 1.20933 1.01817 0.94531 1.05659 1.21267 0.96253 0.95389 0.95703 1.25049 0.95908 0.93681 1.02308 1.86572 1.62598 1.32674 1.53746 0.93296 0.78121 0.81266 0.77716 1.41852 1.25913 1.11051 1.31935 1.23357 0.94675 0.97841 0.99509 0.92407 0.92231 0.85383 0.84523 0.85033 0.88226 0.93407 0.75136 0.83894 0.81547 0.84487 0.76092 1.21136 1.22614 0.73123 0.89212 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.71 10.57 -51.36 -0.54 -1.25 16 3 C 0.45 1.23 7.96 71.24 0.57 1.80 16 4 O -0.54 -5.73 15.51 21.95 0.34 -5.38 16 5 C -0.10 0.60 5.65 29.85 0.17 0.77 16 6 C -0.10 0.33 3.15 -10.21 -0.03 0.30 16 7 H 0.09 0.10 7.68 -2.39 -0.02 0.08 16 8 C -0.15 0.04 7.44 31.18 0.23 0.27 16 9 C 0.12 -0.08 4.21 45.52 0.19 0.11 16 10 H 0.09 0.48 7.50 -2.39 -0.02 0.46 16 11 N -0.70 1.29 5.36 -443.99 -2.38 -1.09 16 12 C 0.59 3.66 7.79 86.45 0.67 4.33 16 13 O -0.57 -9.09 16.50 -4.32 -0.07 -9.16 16 14 C -0.06 -0.19 7.06 40.35 0.28 0.09 16 15 C -0.12 -0.51 10.65 22.57 0.24 -0.27 16 16 C -0.21 0.15 9.32 22.01 0.21 0.36 16 17 C 0.03 -0.10 6.47 41.35 0.27 0.17 16 18 C -0.06 0.35 3.08 71.24 0.22 0.57 16 19 O -0.55 1.74 12.88 -148.98 -1.92 -0.18 16 20 Si 0.79 -4.32 30.54 68.60 2.10 -2.23 16 21 N -0.51 1.79 5.99 -171.93 -1.03 0.76 16 22 C -0.12 0.92 7.39 31.12 0.23 1.15 16 23 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 24 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 25 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.14 -1.51 8.14 -2.39 -0.02 -1.53 16 27 H 0.13 -1.42 7.85 -2.39 -0.02 -1.44 16 28 H 0.10 -0.35 7.90 -2.39 -0.02 -0.37 16 29 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.41 -3.78 7.84 -92.71 -0.73 -4.50 16 31 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 32 H 0.17 -0.81 6.17 -2.91 -0.02 -0.83 16 33 H 0.14 -1.19 7.96 -2.38 -0.02 -1.21 16 34 H 0.39 -2.91 8.70 -74.06 -0.64 -3.55 16 35 H -0.29 0.10 7.11 99.48 0.71 0.81 16 36 H -0.30 -0.57 7.11 99.48 0.71 0.14 16 37 H 0.43 -3.94 8.19 -92.70 -0.76 -4.70 16 38 H 0.09 -0.74 8.14 -2.38 -0.02 -0.76 16 39 H 0.12 -1.63 8.07 -2.39 -0.02 -1.65 16 Total: 0.00 -26.57 337.04 -0.05 -26.61 By element: Atomic # 1 Polarization: -17.91 SS G_CDS: -0.99 Total: -18.89 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 4.44 Total: 10.82 kcal Atomic # 7 Polarization: 3.08 SS G_CDS: -3.41 Total: -0.33 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -2.19 Total: -15.97 kcal Atomic # 14 Polarization: -4.32 SS G_CDS: 2.10 Total: -2.23 kcal Total: -26.57 -0.05 -26.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_6580494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.308 kcal (2) G-P(sol) polarization free energy of solvation -26.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds