Wall clock time and date at job start Sun Mar 7 2021 14:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34237 * 117.00068 * 2 1 4 4 O 1.20821 * 119.99389 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99877 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46743 * 179.97438 * 5 3 2 7 7 H 1.08993 * 112.84974 * 316.20087 * 6 5 3 8 8 C 1.53958 * 113.66059 * 87.44365 * 6 5 3 9 9 C 1.53781 * 87.01619 * 139.93237 * 8 6 5 10 10 H 1.08992 * 113.61758 * 89.22906 * 9 8 6 11 11 N 1.46499 * 113.61346 * 220.04421 * 9 8 6 12 12 C 1.34767 * 120.00311 * 254.13884 * 11 9 8 13 13 O 1.21660 * 120.00219 * 359.97438 * 12 11 9 14 14 C 1.46996 * 120.00169 * 180.02562 * 12 11 9 15 15 C 1.35812 * 125.13799 * 179.97438 * 14 12 11 16 16 C 1.46259 * 106.08657 * 179.97438 * 15 14 12 17 17 C 1.39770 * 134.14890 * 179.97438 * 16 15 14 18 18 C 1.50699 * 120.09544 * 359.97438 * 17 16 15 19 19 O 1.42903 * 109.47152 * 75.00325 * 18 17 16 20 20 Si 1.86305 * 109.47184 * 194.99797 * 18 17 16 21 21 C 1.36637 * 119.81195 * 180.25559 * 17 16 15 22 22 C 1.38765 * 120.49071 * 359.49439 * 21 17 16 23 23 C 1.38259 * 120.68210 * 0.51130 * 22 21 17 24 24 O 1.35958 * 120.12534 * 179.77317 * 23 22 21 25 25 C 1.42910 * 116.99901 * 359.97029 * 24 23 22 26 26 C 1.39453 * 119.75769 * 359.74848 * 23 22 21 27 27 O 1.34770 * 133.24791 * 180.02562 * 26 23 22 28 28 C 1.53778 * 113.61106 * 184.99945 * 6 5 3 29 29 H 1.09001 * 109.47177 * 299.99824 * 1 2 3 30 30 H 1.09001 * 109.47121 * 59.99935 * 1 2 3 31 31 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46607 * 60.00226 * 5 3 2 33 33 H 1.08992 * 109.47078 * 300.00171 * 5 3 2 34 34 H 1.08994 * 113.61777 * 25.40970 * 8 6 5 35 35 H 1.09005 * 113.66269 * 254.45392 * 8 6 5 36 36 H 0.97007 * 120.00119 * 74.13571 * 11 9 8 37 37 H 1.08002 * 126.95974 * 359.95438 * 15 14 12 38 38 H 1.08997 * 109.47198 * 315.00003 * 18 17 16 39 39 H 0.96700 * 114.00311 * 180.02562 * 19 18 17 40 40 H 1.48499 * 109.99670 * 178.68093 * 20 18 17 41 41 H 1.48497 * 110.00233 * 300.00062 * 20 18 17 42 42 H 1.08001 * 119.75359 * 179.74713 * 21 17 16 43 43 H 1.08003 * 119.65601 * 180.23216 * 22 21 17 44 44 H 1.09004 * 109.46280 * 60.00476 * 25 24 23 45 45 H 1.08996 * 109.47147 * 180.02562 * 25 24 23 46 46 H 1.08993 * 109.46957 * 300.00583 * 25 24 23 47 47 H 1.08998 * 113.61580 * 105.47613 * 28 6 5 48 48 H 1.09000 * 113.69446 * 334.57908 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.4246 3.3534 -0.6962 8 6 4.1155 3.3528 1.4075 9 6 5.3817 4.0673 0.9065 10 1 5.1854 5.0422 0.4604 11 7 6.4655 4.1005 1.8916 12 6 6.7557 5.2480 2.5360 13 8 6.1179 6.2566 2.2992 14 6 7.8435 5.2813 3.5240 15 6 8.2239 6.3767 4.2312 16 6 9.3317 5.9446 5.0828 17 6 10.1427 6.5844 6.0244 18 6 9.9394 8.0465 6.3277 19 8 8.7696 8.2080 7.1324 20 14 11.4211 8.7017 7.2477 21 6 11.1240 5.8818 6.6650 22 6 11.3154 4.5341 6.3954 23 6 10.5250 3.8810 5.4679 24 8 10.7254 2.5613 5.2093 25 6 11.7719 1.9101 5.9325 26 6 9.5212 4.5806 4.7989 27 8 8.6139 4.2280 3.8668 28 6 5.5208 2.9348 -0.1245 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9556 0.7809 -0.8909 33 1 3.9564 0.7806 0.8891 34 1 4.3092 2.6170 2.1879 35 1 3.3008 4.0324 1.6577 36 1 6.9743 3.2964 2.0802 37 1 7.7953 7.3665 4.1757 38 1 9.8179 8.5976 5.3952 39 1 8.5767 9.1262 7.3662 40 1 11.2470 10.1502 7.5248 41 1 11.5976 7.9586 8.5212 42 1 11.7527 6.3781 7.3894 43 1 12.0926 3.9909 6.9124 44 1 11.5672 1.9713 7.0014 45 1 11.8248 0.8638 5.6317 46 1 12.7218 2.3986 5.7158 47 1 5.8390 3.2774 -1.1091 48 1 6.1006 2.0851 0.2359 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17321982_6672420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:27:53 Heat of formation + Delta-G solvation = -120.608248 kcal Electronic energy + Delta-G solvation = -33565.163202 eV Core-core repulsion = 28748.333616 eV Total energy + Delta-G solvation = -4816.829586 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.149 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.61624 -41.66673 -41.00850 -40.52867 -39.34593 -38.97003 -37.37752 -37.17064 -34.90965 -33.53123 -32.04805 -31.70097 -30.82837 -28.75989 -28.38673 -26.81679 -26.36635 -25.65734 -23.91230 -23.78033 -22.00418 -21.63652 -21.58013 -20.74250 -19.59077 -18.80607 -18.56421 -18.52601 -18.37526 -17.84438 -17.59965 -17.49568 -17.05018 -16.97767 -16.61072 -16.33132 -16.22452 -15.69030 -15.66420 -15.62291 -14.87126 -14.72356 -14.47928 -14.46987 -14.10096 -14.00208 -13.89658 -13.87205 -13.64038 -13.44495 -13.38459 -13.21845 -12.98198 -12.86697 -12.65711 -12.43295 -12.24045 -12.06443 -11.94181 -11.74616 -11.71794 -11.47843 -11.34618 -11.28236 -10.89916 -10.49529 -10.17344 -9.71496 -8.94146 -5.01041 -0.54196 0.17486 0.75601 1.21072 1.25693 1.33552 1.54189 1.73047 1.88822 2.00705 2.09129 2.10435 2.41691 3.21521 3.32586 3.35322 3.39840 3.59402 3.66196 3.68614 3.71562 3.85909 3.88038 3.99199 4.01777 4.12233 4.12550 4.18577 4.19097 4.20820 4.25260 4.30797 4.35560 4.42609 4.48078 4.50755 4.58042 4.61382 4.69100 4.72528 4.87539 4.91394 4.93564 5.03274 5.10869 5.16004 5.29852 5.34808 5.42852 5.48066 5.67926 6.19532 6.37815 6.43247 6.78699 6.97645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.103 4.103 6 C -0.099 4.099 7 H 0.109 0.891 8 C -0.147 4.147 9 C 0.122 3.878 10 H 0.121 0.879 11 N -0.707 5.707 12 C 0.603 3.397 13 O -0.510 6.510 14 C -0.024 4.024 15 C -0.104 4.104 16 C -0.082 4.082 17 C -0.050 4.050 18 C -0.075 4.075 19 O -0.533 6.533 20 Si 0.688 3.312 21 C -0.091 4.091 22 C -0.177 4.177 23 C 0.150 3.850 24 O -0.311 6.311 25 C 0.024 3.976 26 C 0.047 3.953 27 O -0.174 6.174 28 C -0.139 4.139 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.409 0.591 37 H 0.172 0.828 38 H 0.077 0.923 39 H 0.380 0.620 40 H -0.259 1.259 41 H -0.253 1.253 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.083 0.917 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 -4.022 -0.452 7.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.390 6.390 5 C -0.140 4.140 6 C -0.118 4.118 7 H 0.127 0.873 8 C -0.186 4.186 9 C 0.017 3.983 10 H 0.139 0.861 11 N -0.357 5.357 12 C 0.389 3.611 13 O -0.386 6.386 14 C -0.075 4.075 15 C -0.125 4.125 16 C -0.084 4.084 17 C -0.051 4.051 18 C -0.184 4.184 19 O -0.340 6.340 20 Si 0.589 3.411 21 C -0.108 4.108 22 C -0.196 4.196 23 C 0.104 3.896 24 O -0.224 6.224 25 C -0.071 4.071 26 C -0.002 4.002 27 O -0.075 6.075 28 C -0.177 4.177 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.244 0.756 37 H 0.190 0.810 38 H 0.095 0.905 39 H 0.228 0.772 40 H -0.184 1.184 41 H -0.178 1.178 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.259 -3.683 -0.221 6.424 hybrid contribution -0.907 0.168 0.694 1.154 sum 4.352 -3.515 0.473 5.614 Atomic orbital electron populations 1.23298 0.75961 1.03917 1.02705 1.86506 1.23777 1.33556 1.84096 1.23819 0.92298 0.81388 0.72389 1.90695 1.67222 1.36309 1.44795 1.21406 0.87612 0.98846 1.06158 1.22279 0.96099 0.94226 0.99147 0.87292 1.23610 0.98166 1.00254 0.96546 1.22614 0.86246 1.00291 0.89121 0.86067 1.45898 1.36324 1.12027 1.41452 1.16657 0.80964 0.84110 0.79399 1.90920 1.49978 1.33677 1.64022 1.21975 0.96816 0.86686 1.01974 1.22704 0.95364 0.99714 0.94674 1.19402 0.97721 0.91925 0.99312 1.18339 0.95921 0.94383 0.96429 1.24783 0.97750 0.96267 0.99630 1.86622 1.43450 1.32112 1.71841 0.94992 0.83744 0.79159 0.83198 1.20523 0.97755 0.93552 0.99000 1.20951 1.02285 0.95667 1.00669 1.17719 0.93083 0.83828 0.94950 1.86166 1.53812 1.19287 1.63121 1.23190 0.89097 0.98196 0.96588 1.18729 0.93801 0.92966 0.94686 1.84039 1.39072 1.35625 1.48790 1.23425 0.95804 0.98417 1.00010 0.91784 0.91765 0.87931 0.87117 0.87382 0.89455 0.90143 0.75553 0.81007 0.90499 0.77182 1.18398 1.17770 0.84260 0.83406 0.92154 0.87661 0.92014 0.89789 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.50 10.57 -39.28 -0.41 -0.92 16 3 C 0.46 0.70 7.96 36.01 0.29 0.99 16 4 O -0.50 -2.32 15.51 -18.75 -0.29 -2.61 16 5 C -0.10 0.20 5.65 -27.88 -0.16 0.05 16 6 C -0.10 0.14 3.15 -89.71 -0.28 -0.15 16 7 H 0.11 -0.01 7.68 -51.93 -0.40 -0.41 16 8 C -0.15 0.03 7.45 -25.83 -0.19 -0.17 16 9 C 0.12 -0.03 4.21 -67.12 -0.28 -0.31 16 10 H 0.12 0.13 7.50 -51.93 -0.39 -0.25 16 11 N -0.71 -0.31 5.36 -54.23 -0.29 -0.60 16 12 C 0.60 2.04 7.80 -12.72 -0.10 1.94 16 13 O -0.51 -3.19 16.44 5.22 0.09 -3.11 16 14 C -0.02 -0.08 7.07 -36.90 -0.26 -0.34 16 15 C -0.10 -0.35 10.68 -37.23 -0.40 -0.75 16 16 C -0.08 -0.28 6.16 -105.21 -0.65 -0.92 16 17 C -0.05 -0.10 5.30 -104.63 -0.55 -0.65 16 18 C -0.07 -0.03 2.70 36.01 0.10 0.07 16 19 O -0.53 -0.89 12.86 -35.23 -0.45 -1.34 16 20 Si 0.69 -0.84 30.19 -169.99 -5.13 -5.98 16 21 C -0.09 -0.04 8.62 -39.96 -0.34 -0.39 16 22 C -0.18 -0.02 9.03 -39.38 -0.36 -0.37 16 23 C 0.15 0.32 6.70 -39.12 -0.26 0.06 16 24 O -0.31 -0.49 10.50 -19.61 -0.21 -0.69 16 25 C 0.02 -0.06 9.81 101.05 0.99 0.93 16 26 C 0.05 0.17 7.35 -38.23 -0.28 -0.11 16 27 O -0.17 -0.61 10.28 2.68 0.03 -0.58 16 28 C -0.14 0.37 7.39 -25.92 -0.19 0.18 16 29 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 30 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 31 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 32 H 0.11 -0.41 8.14 -51.93 -0.42 -0.84 16 33 H 0.11 -0.37 7.85 -51.93 -0.41 -0.78 16 34 H 0.09 -0.07 7.90 -51.93 -0.41 -0.48 16 35 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 36 H 0.41 -0.56 8.43 -40.82 -0.34 -0.91 16 37 H 0.17 0.41 8.06 -52.49 -0.42 -0.02 16 38 H 0.08 -0.08 7.96 -51.93 -0.41 -0.49 16 39 H 0.38 -0.90 8.74 45.56 0.40 -0.50 16 40 H -0.26 -0.22 7.11 56.52 0.40 0.18 16 41 H -0.25 -0.30 6.76 56.52 0.38 0.08 16 42 H 0.14 -0.20 4.84 -52.49 -0.25 -0.45 16 43 H 0.15 -0.42 6.26 -52.48 -0.33 -0.75 16 44 H 0.06 -0.21 7.66 -51.93 -0.40 -0.61 16 45 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 46 H 0.06 -0.24 7.66 -51.93 -0.40 -0.64 16 47 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 48 H 0.09 -0.37 8.07 -51.93 -0.42 -0.79 16 LS Contribution 408.73 15.07 6.16 6.16 Total: 0.00 -10.86 408.73 -8.74 -19.60 By element: Atomic # 1 Polarization: -4.68 SS G_CDS: -6.36 Total: -11.04 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.87 Total: 1.11 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -0.29 Total: -0.60 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -1.25 Total: -9.25 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: -5.13 Total: -5.98 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -10.86 -8.74 -19.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_6672420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.009 kcal (2) G-P(sol) polarization free energy of solvation -10.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds