Wall clock time and date at job start Sun Mar 7 2021 14:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 117.00031 * 2 1 4 4 O 1.20829 * 119.99906 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99836 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47061 * 179.97438 * 5 3 2 7 7 H 1.08998 * 112.84966 * 316.20467 * 6 5 3 8 8 C 1.53960 * 113.66282 * 87.44454 * 6 5 3 9 9 C 1.53778 * 87.01927 * 139.93336 * 8 6 5 10 10 H 1.09004 * 113.61696 * 89.22705 * 9 8 6 11 11 N 1.46495 * 113.61521 * 220.04953 * 9 8 6 12 12 C 1.34783 * 119.99716 * 254.13577 * 11 9 8 13 13 O 1.21554 * 120.00279 * 0.02562 * 12 11 9 14 14 C 1.47844 * 119.99901 * 179.97438 * 12 11 9 15 15 C 1.39563 * 120.14325 * 6.25681 * 14 12 11 16 16 C 1.37980 * 119.84852 * 180.29387 * 15 14 12 17 17 C 1.50698 * 119.92379 * 179.71478 * 16 15 14 18 18 O 1.42905 * 109.47046 * 254.72293 * 17 16 15 19 19 Si 1.86298 * 109.47556 * 14.72370 * 17 16 15 20 20 C 1.38334 * 120.14706 * 359.43392 * 16 15 14 21 21 C 1.50697 * 119.85430 * 180.27362 * 20 16 15 22 22 C 1.38385 * 120.29229 * 0.25641 * 20 16 15 23 23 C 1.37932 * 120.14630 * 0.04016 * 22 20 16 24 24 C 1.50698 * 120.07647 * 179.97438 * 23 22 20 25 25 C 1.53777 * 113.61768 * 185.00412 * 6 5 3 26 26 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47450 * 300.00601 * 1 2 3 28 28 H 1.08996 * 109.46587 * 60.00112 * 1 2 3 29 29 H 1.08998 * 109.47086 * 60.00584 * 5 3 2 30 30 H 1.08992 * 109.47516 * 300.00139 * 5 3 2 31 31 H 1.08995 * 113.61434 * 25.41039 * 8 6 5 32 32 H 1.09006 * 113.66472 * 254.46119 * 8 6 5 33 33 H 0.96996 * 120.00300 * 74.13593 * 11 9 8 34 34 H 1.07997 * 120.07544 * 0.02562 * 15 14 12 35 35 H 1.09009 * 109.47525 * 134.72684 * 17 16 15 36 36 H 0.96694 * 113.99834 * 180.02562 * 18 17 16 37 37 H 1.48499 * 110.00421 * 178.68360 * 19 17 16 38 38 H 1.48501 * 109.99766 * 300.00228 * 19 17 16 39 39 H 1.09004 * 109.47219 * 90.00352 * 21 20 16 40 40 H 1.08997 * 109.47641 * 210.00092 * 21 20 16 41 41 H 1.08994 * 109.47272 * 330.00736 * 21 20 16 42 42 H 1.08003 * 119.92701 * 180.02562 * 22 20 16 43 43 H 1.09000 * 109.47202 * 96.58674 * 24 23 22 44 44 H 1.08997 * 109.47113 * 216.58984 * 24 23 22 45 45 H 1.08996 * 109.46750 * 336.59060 * 24 23 22 46 46 H 1.08990 * 113.61721 * 105.46944 * 25 6 5 47 47 H 1.09005 * 113.68583 * 334.57869 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7421 -0.0002 7 1 3.4253 3.3531 -0.6960 8 6 4.1145 3.3534 1.4082 9 6 5.3812 4.0676 0.9080 10 1 5.1852 5.0424 0.4612 11 7 6.4642 4.1010 1.8939 12 6 6.7539 5.2490 2.5380 13 8 6.1163 6.2564 2.3012 14 6 7.8465 5.2826 3.5334 15 6 8.6640 4.1661 3.7147 16 6 9.6781 4.2020 4.6497 17 6 10.5577 2.9951 4.8514 18 8 10.1985 2.3423 6.0708 19 14 10.3318 1.8167 3.4263 20 6 9.8928 5.3454 5.3982 21 6 11.0062 5.3795 6.4132 22 6 9.0899 6.4581 5.2188 23 6 8.0688 6.4334 4.2918 24 6 7.1951 7.6458 4.0981 25 6 5.5209 2.9348 -0.1226 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 3.9564 0.7806 -0.8892 30 1 3.9558 0.7809 0.8907 31 1 4.3076 2.6178 2.1891 32 1 3.2996 4.0330 1.6577 33 1 6.9728 3.2971 2.0831 34 1 8.5005 3.2745 3.1276 35 1 11.6003 3.3095 4.9011 36 1 10.7253 1.5552 6.2655 37 1 11.2174 0.6370 3.5973 38 1 8.9144 1.3806 3.3478 39 1 11.9198 5.7376 5.9385 40 1 10.7340 6.0493 7.2288 41 1 11.1703 4.3762 6.8063 42 1 9.2631 7.3478 5.8060 43 1 7.5638 8.2283 3.2537 44 1 6.1713 7.3281 3.9010 45 1 7.2184 8.2581 4.9995 46 1 5.8399 3.2768 -1.1070 47 1 6.1005 2.0851 0.2386 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17321982_9599494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:28:06 Heat of formation + Delta-G solvation = -101.510619 kcal Electronic energy + Delta-G solvation = -28683.738819 eV Core-core repulsion = 24606.016414 eV Total energy + Delta-G solvation = -4077.722405 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86997 -41.51238 -40.43926 -39.29327 -37.71606 -37.50009 -35.20456 -34.44546 -33.29109 -31.54162 -29.39952 -28.65732 -28.23036 -26.71146 -25.62135 -24.66481 -23.61667 -22.50048 -21.59085 -21.18590 -20.34235 -18.71950 -18.54050 -18.48694 -17.94638 -17.58731 -17.33950 -16.76416 -16.36736 -16.27805 -16.11435 -15.95743 -15.27685 -15.00532 -14.79130 -14.69418 -14.58038 -14.47487 -14.07096 -13.95030 -13.81867 -13.53775 -13.43427 -13.33419 -13.09555 -12.92954 -12.85542 -12.80164 -12.69236 -12.58383 -12.09157 -11.90314 -11.88019 -11.84458 -11.81447 -11.48058 -11.33380 -10.71037 -10.43317 -10.14801 -9.88773 -9.59019 -4.91237 -0.24414 0.17309 1.16305 1.29399 1.59722 1.71508 1.75134 1.93254 2.10760 2.61880 3.33181 3.41983 3.46820 3.59061 3.65073 3.75568 3.78250 3.82374 3.85097 3.89345 4.12905 4.20572 4.24296 4.26055 4.30978 4.45211 4.46516 4.52011 4.58390 4.61515 4.67131 4.68664 4.72693 4.77605 4.79316 4.81270 4.85234 4.92044 4.99009 5.07110 5.09479 5.16606 5.23147 5.29869 5.40053 5.49052 5.50669 5.59063 5.81531 6.45017 6.62030 6.69918 7.14247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.544 6.544 5 C -0.097 4.097 6 C -0.096 4.096 7 H 0.090 0.910 8 C -0.151 4.151 9 C 0.117 3.883 10 H 0.097 0.903 11 N -0.706 5.706 12 C 0.556 3.444 13 O -0.564 6.564 14 C -0.161 4.161 15 C -0.072 4.072 16 C -0.099 4.099 17 C -0.084 4.084 18 O -0.553 6.553 19 Si 0.750 3.250 20 C -0.033 4.033 21 C -0.124 4.124 22 C -0.137 4.137 23 C -0.028 4.028 24 C -0.118 4.118 25 C -0.118 4.118 26 H 0.128 0.872 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.411 0.589 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.395 0.605 37 H -0.283 1.283 38 H -0.277 1.277 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.147 0.853 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.791 -5.953 -1.283 9.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.299 3.701 4 O -0.434 6.434 5 C -0.134 4.134 6 C -0.115 4.115 7 H 0.108 0.892 8 C -0.190 4.190 9 C 0.012 3.988 10 H 0.115 0.885 11 N -0.357 5.357 12 C 0.346 3.654 13 O -0.444 6.444 14 C -0.164 4.164 15 C -0.090 4.090 16 C -0.099 4.099 17 C -0.192 4.192 18 O -0.363 6.363 19 Si 0.653 3.347 20 C -0.033 4.033 21 C -0.180 4.180 22 C -0.155 4.155 23 C -0.029 4.029 24 C -0.174 4.174 25 C -0.155 4.155 26 H 0.146 0.854 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.248 0.752 34 H 0.162 0.838 35 H 0.113 0.887 36 H 0.245 0.755 37 H -0.210 1.210 38 H -0.203 1.203 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.164 0.836 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.448 -5.287 -1.690 7.777 hybrid contribution -0.333 -0.504 1.320 1.451 sum 5.115 -5.791 -0.370 7.735 Atomic orbital electron populations 1.23471 0.75372 1.05446 1.02214 1.86511 1.24549 1.33488 1.83823 1.24592 0.93664 0.80814 0.71036 1.90686 1.68354 1.37518 1.46797 1.21545 0.84990 0.98547 1.08317 1.22177 0.97247 0.94432 0.97604 0.89203 1.23626 0.97582 1.00097 0.97692 1.22513 0.86360 0.99998 0.89912 0.88486 1.45851 1.36383 1.11967 1.41481 1.18494 0.82851 0.83372 0.80730 1.90731 1.53441 1.34705 1.65545 1.19676 0.99288 0.96173 1.01268 1.21277 0.93336 0.97148 0.97266 1.19230 0.97790 0.95056 0.97812 1.24944 1.00343 0.97810 0.96144 1.86570 1.64393 1.45976 1.39395 0.94268 0.78405 0.78199 0.83786 1.20284 0.95962 0.92219 0.94862 1.20998 0.96059 1.04058 0.96914 1.21190 0.95392 0.99473 0.99451 1.20232 0.94857 0.94611 0.93162 1.21011 0.99755 0.94474 1.02134 1.23365 0.94551 0.97889 0.99734 0.85394 0.92458 0.92167 0.84411 0.85324 0.88717 0.93336 0.75154 0.83788 0.88653 0.75478 1.20999 1.20324 0.89091 0.90695 0.90332 0.83571 0.90889 0.90739 0.90861 0.88782 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.37 -0.99 10.57 -51.42 -0.54 -1.54 16 3 C 0.45 1.62 7.96 71.23 0.57 2.19 16 4 O -0.54 -6.08 15.51 21.95 0.34 -5.74 16 5 C -0.10 0.49 5.65 29.85 0.17 0.66 16 6 C -0.10 0.24 3.15 -10.21 -0.03 0.20 16 7 H 0.09 0.14 7.68 -2.39 -0.02 0.12 16 8 C -0.15 -0.19 7.45 31.18 0.23 0.04 16 9 C 0.12 0.05 4.21 45.52 0.19 0.24 16 10 H 0.10 0.51 7.50 -2.38 -0.02 0.49 16 11 N -0.71 -0.48 5.31 -442.90 -2.35 -2.83 16 12 C 0.56 4.12 7.71 86.79 0.67 4.79 16 13 O -0.56 -8.05 12.96 -3.89 -0.05 -8.10 16 14 C -0.16 -0.88 5.87 -20.09 -0.12 -1.00 16 15 C -0.07 -0.08 8.13 22.53 0.18 0.11 16 16 C -0.10 -0.08 5.29 -19.90 -0.11 -0.19 16 17 C -0.08 0.29 1.87 71.24 0.13 0.42 16 18 O -0.55 0.65 11.89 -148.98 -1.77 -1.12 16 19 Si 0.75 -4.38 30.18 68.60 2.07 -2.31 16 20 C -0.03 -0.05 5.89 -19.81 -0.12 -0.17 16 21 C -0.12 0.33 9.31 71.24 0.66 0.99 16 22 C -0.14 -0.38 9.31 22.23 0.21 -0.17 16 23 C -0.03 -0.17 5.91 -19.61 -0.12 -0.28 16 24 C -0.12 -0.78 8.74 71.24 0.62 -0.16 16 25 C -0.12 0.80 7.39 31.12 0.23 1.03 16 26 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 27 H 0.06 0.06 8.13 -2.39 -0.02 0.04 16 28 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 29 H 0.14 -1.40 8.14 -2.39 -0.02 -1.42 16 30 H 0.13 -1.15 7.85 -2.39 -0.02 -1.17 16 31 H 0.09 -0.09 7.90 -2.39 -0.02 -0.11 16 32 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.41 -2.00 6.79 -92.71 -0.63 -2.63 16 34 H 0.14 -0.55 3.28 -2.91 -0.01 -0.56 16 35 H 0.10 -0.69 7.38 -2.38 -0.02 -0.70 16 36 H 0.39 -3.56 8.74 -74.06 -0.65 -4.21 16 37 H -0.28 0.41 7.11 99.48 0.71 1.12 16 38 H -0.28 0.56 6.75 99.48 0.67 1.23 16 39 H 0.09 -0.51 8.14 -2.38 -0.02 -0.53 16 40 H 0.07 -0.25 8.08 -2.39 -0.02 -0.27 16 41 H 0.08 -0.17 6.18 -2.39 -0.01 -0.18 16 42 H 0.15 -0.14 8.06 -2.91 -0.02 -0.16 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.07 0.85 5.85 -2.39 -0.01 0.83 16 45 H 0.07 0.22 8.04 -2.39 -0.02 0.20 16 46 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 47 H 0.12 -1.39 8.07 -2.38 -0.02 -1.40 16 Total: 0.00 -23.75 381.18 2.01 -21.75 By element: Atomic # 1 Polarization: -9.76 SS G_CDS: -0.26 Total: -10.02 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 4.58 Total: 9.90 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -2.35 Total: -2.83 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -2.02 Total: -16.50 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.07 Total: -2.31 kcal Total: -23.75 2.01 -21.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_9599494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.762 kcal (2) G-P(sol) polarization free energy of solvation -23.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds