Wall clock time and date at job start Sun Mar 7 2021 14:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00004 * 2 1 4 4 O 1.20825 * 120.00605 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99852 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47008 * 180.02562 * 5 3 2 7 7 H 1.08996 * 112.85078 * 43.79996 * 6 5 3 8 8 C 1.53784 * 113.61467 * 174.99620 * 6 5 3 9 9 C 1.53781 * 87.07926 * 139.98056 * 8 6 5 10 10 H 1.09001 * 113.61688 * 89.20435 * 9 8 6 11 11 N 1.46505 * 113.61493 * 220.01981 * 9 8 6 12 12 C 1.34771 * 120.00476 * 203.47040 * 11 9 8 13 13 O 1.21282 * 119.99657 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00381 * 179.97438 * 12 11 9 15 15 N 1.46501 * 109.46999 * 180.02562 * 14 12 11 16 16 C 1.36827 * 125.06464 * 264.97526 * 15 14 12 17 17 C 1.34236 * 109.93865 * 180.02562 * 16 15 14 18 18 C 1.50705 * 126.50052 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.46826 * 104.97690 * 18 17 16 20 20 Si 1.86299 * 109.47010 * 344.98079 * 18 17 16 21 21 C 1.46486 * 107.00124 * 0.02562 * 17 16 15 22 22 C 1.39591 * 134.03841 * 179.97438 * 21 17 16 23 23 C 1.36655 * 119.76796 * 180.02562 * 22 21 17 24 24 C 1.38792 * 120.52555 * 0.02562 * 23 22 21 25 25 C 1.37789 * 120.66852 * 0.22236 * 24 23 22 26 26 C 1.37695 * 125.05932 * 85.00479 * 15 14 12 27 27 C 1.53781 * 87.17390 * 334.60761 * 9 8 6 28 28 H 1.08997 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46238 * 299.99485 * 1 2 3 30 30 H 1.08995 * 109.47282 * 59.99425 * 1 2 3 31 31 H 1.08993 * 109.47259 * 60.00371 * 5 3 2 32 32 H 1.08998 * 109.47000 * 299.99939 * 5 3 2 33 33 H 1.09006 * 113.61221 * 25.43341 * 8 6 5 34 34 H 1.08996 * 113.69201 * 254.53682 * 8 6 5 35 35 H 0.97008 * 119.99755 * 23.47504 * 11 9 8 36 36 H 1.09003 * 109.46919 * 60.00382 * 14 12 11 37 37 H 1.09003 * 109.47005 * 300.00248 * 14 12 11 38 38 H 1.08003 * 125.03267 * 0.04409 * 16 15 14 39 39 H 1.08996 * 109.47358 * 224.97772 * 18 17 16 40 40 H 0.96703 * 114.00161 * 299.99967 * 19 18 17 41 41 H 1.48499 * 110.00511 * 58.67999 * 20 18 17 42 42 H 1.48504 * 109.99997 * 179.97438 * 20 18 17 43 43 H 1.08006 * 120.11047 * 0.05453 * 22 21 17 44 44 H 1.08002 * 119.73679 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.66372 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.10958 * 179.67736 * 25 24 23 47 47 H 1.09005 * 113.60936 * 139.93688 * 27 9 8 48 48 H 1.08997 * 113.61749 * 270.83725 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4253 3.3530 0.6960 8 6 5.5210 2.9347 0.1226 9 6 5.3811 4.0676 -0.9078 10 1 5.1852 5.0424 -0.4611 11 7 6.4642 4.1011 -1.8939 12 6 6.7539 5.2490 -2.5380 13 8 6.1183 6.2543 -2.3009 14 6 7.8684 5.2835 -3.5518 15 7 7.9829 6.6350 -4.1056 16 6 7.3946 7.0621 -5.2647 17 6 7.6996 8.3506 -5.4852 18 6 7.2489 9.1916 -6.6517 19 8 6.2274 10.0937 -6.2219 20 14 6.5768 8.0855 -7.9917 21 6 8.5538 8.7842 -4.3770 22 6 9.1796 9.9877 -4.0476 23 6 9.9321 10.0720 -2.9100 24 6 10.0799 8.9701 -2.0793 25 6 9.4752 7.7711 -2.3879 26 6 8.6993 7.6645 -3.5373 27 6 4.1145 3.3533 -1.4082 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 6.0993 2.0844 -0.2391 34 1 5.8413 3.2766 1.1067 35 1 6.9728 3.2970 -2.0832 36 1 7.6512 4.5788 -4.3545 37 1 8.8065 5.0079 -3.0701 38 1 6.7759 6.4528 -5.9070 39 1 8.0951 9.7588 -7.0392 40 1 5.4420 9.6572 -5.8644 41 1 5.4426 7.2833 -7.4670 42 1 6.1283 8.9028 -9.1476 43 1 9.0689 10.8494 -4.6894 44 1 10.4157 11.0036 -2.6555 45 1 10.6775 9.0524 -1.1834 46 1 9.6006 6.9179 -1.7377 47 1 3.2997 4.0330 -1.6575 48 1 4.3076 2.6179 -2.1891 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17321982_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:28:10 Heat of formation + Delta-G solvation = -55.279605 kcal Electronic energy + Delta-G solvation = -31316.540101 eV Core-core repulsion = 26918.944231 eV Total energy + Delta-G solvation = -4397.595870 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.48162 -41.72551 -40.96636 -39.50658 -38.00819 -37.58081 -37.41990 -34.97276 -34.00646 -31.90373 -31.20109 -30.11306 -29.05129 -28.38195 -26.92058 -25.92250 -24.54553 -23.56203 -22.62690 -21.93531 -21.68587 -20.78862 -20.51116 -18.72188 -18.52927 -18.43611 -17.95780 -17.65256 -17.55273 -17.26197 -16.81091 -16.37330 -16.28211 -16.27329 -15.94967 -15.52583 -15.26163 -15.06787 -14.70542 -14.58100 -14.54655 -14.37376 -14.04055 -13.98514 -13.75243 -13.59426 -13.51224 -13.31114 -13.03768 -12.91065 -12.59550 -12.44137 -12.30535 -12.25043 -12.02675 -11.87057 -11.81358 -11.61621 -11.55879 -11.42775 -11.06718 -10.41041 -10.33366 -10.21117 -9.01351 -8.52193 -4.90218 0.28842 0.80767 1.18043 1.37184 1.38203 1.44317 1.64098 1.67024 1.72870 2.04183 2.14034 3.12098 3.23054 3.26444 3.44310 3.48076 3.56440 3.61122 3.64800 3.75325 3.77771 3.81555 3.87056 4.08981 4.10591 4.12420 4.17884 4.22454 4.32481 4.33619 4.38206 4.45103 4.54601 4.60018 4.60316 4.65369 4.73277 4.81817 4.82462 4.91606 4.93081 5.00591 5.09540 5.26668 5.35036 5.40454 5.65736 5.82021 5.87516 5.91204 6.15920 6.32195 6.37788 6.62704 6.71279 7.00473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.102 4.102 6 C -0.099 4.099 7 H 0.108 0.892 8 C -0.138 4.138 9 C 0.124 3.876 10 H 0.117 0.883 11 N -0.719 5.719 12 C 0.491 3.509 13 O -0.513 6.513 14 C 0.091 3.909 15 N -0.466 5.466 16 C 0.066 3.934 17 C -0.193 4.193 18 C -0.037 4.037 19 O -0.531 6.531 20 Si 0.682 3.318 21 C -0.086 4.086 22 C -0.065 4.065 23 C -0.146 4.146 24 C -0.096 4.096 25 C -0.128 4.128 26 C 0.109 3.891 27 C -0.146 4.146 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.402 0.598 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.168 0.832 39 H 0.114 0.886 40 H 0.374 0.626 41 H -0.261 1.261 42 H -0.257 1.257 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.114 0.886 47 H 0.077 0.923 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -9.541 0.237 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.300 3.700 4 O -0.390 6.390 5 C -0.140 4.140 6 C -0.118 4.118 7 H 0.126 0.874 8 C -0.176 4.176 9 C 0.019 3.981 10 H 0.134 0.866 11 N -0.371 5.371 12 C 0.275 3.725 13 O -0.387 6.387 14 C -0.035 4.035 15 N -0.149 5.149 16 C -0.059 4.059 17 C -0.201 4.201 18 C -0.147 4.147 19 O -0.337 6.337 20 Si 0.583 3.417 21 C -0.090 4.090 22 C -0.083 4.083 23 C -0.165 4.165 24 C -0.116 4.116 25 C -0.149 4.149 26 C 0.005 3.995 27 C -0.185 4.185 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.237 0.763 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.185 0.815 39 H 0.132 0.868 40 H 0.222 0.778 41 H -0.186 1.186 42 H -0.181 1.181 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.132 0.868 47 H 0.096 0.904 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.876 -8.571 -0.193 9.042 hybrid contribution -0.969 -0.198 0.890 1.331 sum 1.907 -8.769 0.697 9.001 Atomic orbital electron populations 1.23305 0.75893 1.03961 1.02724 1.86502 1.23826 1.33507 1.84073 1.23810 0.92299 0.81414 0.72437 1.90702 1.67241 1.36309 1.44760 1.21398 0.87663 0.98789 1.06101 1.22277 0.96133 0.94224 0.99163 0.87421 1.23416 0.95781 0.98384 1.00067 1.22503 0.86440 0.99923 0.89203 0.86561 1.45948 1.36806 1.12087 1.42274 1.21076 0.85225 0.83782 0.82467 1.90819 1.50766 1.33424 1.63662 1.21605 0.99651 0.84091 0.98179 1.43198 1.43056 1.08678 1.19953 1.21577 0.99674 0.95516 0.89083 1.20583 1.06033 0.93925 0.99560 1.24290 0.93966 0.97278 0.99193 1.86593 1.29151 1.34978 1.82940 0.95373 0.85872 0.81941 0.78468 1.18936 1.01146 0.93430 0.95506 1.20308 0.95502 0.95817 0.96698 1.20670 1.01322 0.98907 0.95588 1.20826 0.99209 0.92103 0.99424 1.19950 1.00471 0.98857 0.95580 1.18171 0.97567 0.87538 0.96266 1.23587 0.98323 1.00130 0.96472 0.87879 0.91739 0.91788 0.87429 0.87137 0.89001 0.89970 0.76302 0.85910 0.86350 0.81472 0.86828 0.77819 1.18616 1.18133 0.85918 0.85931 0.85741 0.86758 0.90438 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.26 10.56 -39.24 -0.41 -0.68 16 3 C 0.46 0.40 7.96 36.01 0.29 0.68 16 4 O -0.50 -2.08 15.51 -18.75 -0.29 -2.37 16 5 C -0.10 0.30 5.65 -27.88 -0.16 0.14 16 6 C -0.10 0.22 3.15 -89.71 -0.28 -0.06 16 7 H 0.11 -0.05 7.68 -51.93 -0.40 -0.45 16 8 C -0.14 0.55 7.39 -25.92 -0.19 0.35 16 9 C 0.12 -0.20 4.21 -67.12 -0.28 -0.49 16 10 H 0.12 0.12 7.50 -51.93 -0.39 -0.27 16 11 N -0.72 2.11 5.36 -53.02 -0.28 1.83 16 12 C 0.49 0.04 7.90 -10.99 -0.09 -0.05 16 13 O -0.51 -2.85 16.04 5.56 0.09 -2.76 16 14 C 0.09 -0.23 6.48 -5.19 -0.03 -0.27 16 15 N -0.47 -0.61 2.27 -115.71 -0.26 -0.87 16 16 C 0.07 0.08 9.89 -16.73 -0.17 -0.09 16 17 C -0.19 -0.50 5.57 -102.71 -0.57 -1.08 16 18 C -0.04 -0.06 3.06 36.01 0.11 0.05 16 19 O -0.53 -1.92 12.88 -35.23 -0.45 -2.37 16 20 Si 0.68 -0.15 30.82 -169.99 -5.24 -5.39 16 21 C -0.09 -0.37 6.35 -105.14 -0.67 -1.04 16 22 C -0.06 -0.24 10.05 -39.65 -0.40 -0.64 16 23 C -0.15 -0.39 9.97 -39.95 -0.40 -0.79 16 24 C -0.10 -0.22 10.01 -39.54 -0.40 -0.61 16 25 C -0.13 -0.33 10.00 -39.43 -0.39 -0.72 16 26 C 0.11 0.38 6.80 -83.98 -0.57 -0.19 16 27 C -0.15 0.20 7.45 -25.83 -0.19 0.01 16 28 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 29 H 0.06 -0.04 8.13 -51.92 -0.42 -0.47 16 30 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 31 H 0.11 -0.50 7.85 -51.93 -0.41 -0.91 16 32 H 0.11 -0.50 8.14 -51.93 -0.42 -0.93 16 33 H 0.09 -0.53 8.07 -51.93 -0.42 -0.95 16 34 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 35 H 0.40 -2.57 8.71 -40.82 -0.36 -2.92 16 36 H 0.12 -0.73 8.12 -51.93 -0.42 -1.15 16 37 H 0.12 -0.58 8.14 -51.93 -0.42 -1.00 16 38 H 0.17 -0.24 6.27 -52.48 -0.33 -0.57 16 39 H 0.11 0.12 7.96 -51.93 -0.41 -0.29 16 40 H 0.37 0.48 8.70 45.56 0.40 0.87 16 41 H -0.26 -0.37 7.00 56.52 0.40 0.03 16 42 H -0.26 -0.79 7.11 56.52 0.40 -0.39 16 43 H 0.12 0.35 8.06 -52.48 -0.42 -0.08 16 44 H 0.12 0.10 8.06 -52.49 -0.42 -0.33 16 45 H 0.12 0.01 8.06 -52.48 -0.42 -0.42 16 46 H 0.11 0.06 8.06 -52.49 -0.42 -0.36 16 47 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 48 H 0.09 -0.22 7.90 -51.93 -0.41 -0.63 16 LS Contribution 407.97 15.07 6.15 6.15 Total: 0.00 -12.68 407.97 -11.04 -23.72 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: -7.00 Total: -13.51 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -3.33 Total: -3.76 kcal Atomic # 7 Polarization: 1.50 SS G_CDS: -0.55 Total: 0.95 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -1.07 Total: -8.17 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: -5.24 Total: -5.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -12.68 -11.04 -23.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17321982_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.561 kcal (2) G-P(sol) polarization free energy of solvation -12.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds