Wall clock time and date at job start Sun Mar 7 2021 08:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35997 * 116.99480 * 2 1 4 4 C 1.39164 * 120.06966 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07351 * 359.97438 * 4 3 2 6 6 C 1.42897 * 117.00027 * 179.72503 * 5 4 3 7 7 C 1.50706 * 109.47080 * 179.97438 * 6 5 4 8 8 O 1.21274 * 119.99964 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99508 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99594 * 180.02562 * 9 7 6 11 11 H 1.09006 * 112.85122 * 336.19708 * 10 9 7 12 12 C 1.53779 * 113.69115 * 107.46541 * 10 9 7 13 13 C 1.53784 * 87.08045 * 139.99342 * 12 10 9 14 14 H 1.08994 * 113.61477 * 89.11454 * 13 12 10 15 15 Br 1.96594 * 113.61361 * 220.02136 * 13 12 10 16 16 C 1.53779 * 113.61245 * 205.00346 * 10 9 7 17 17 C 1.38561 * 119.85117 * 179.72912 * 4 3 2 18 18 C 1.38244 * 120.00237 * 0.27183 * 17 4 3 19 19 C 1.38256 * 120.14336 * 0.02562 * 18 17 4 20 20 C 1.50701 * 119.92168 * 180.02562 * 19 18 17 21 21 O 1.42906 * 109.46789 * 245.00241 * 20 19 18 22 22 Si 1.86295 * 109.47489 * 4.99981 * 20 19 18 23 23 C 1.38233 * 120.14792 * 0.02562 * 19 18 17 24 24 H 1.09005 * 109.47194 * 60.00175 * 1 2 3 25 25 H 1.09006 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47531 * 299.99918 * 1 2 3 27 27 H 1.09009 * 109.46995 * 60.00363 * 6 5 4 28 28 H 1.09000 * 109.47308 * 300.00588 * 6 5 4 29 29 H 0.96996 * 120.00779 * 0.02562 * 9 7 6 30 30 H 1.09002 * 113.61557 * 25.44454 * 12 10 9 31 31 H 1.09004 * 113.61501 * 254.53874 * 12 10 9 32 32 H 1.08997 * 113.61646 * 105.38794 * 16 10 9 33 33 H 1.09000 * 113.61527 * 334.48065 * 16 10 9 34 34 H 1.08000 * 120.00013 * 180.29615 * 17 4 3 35 35 H 1.07998 * 119.92890 * 179.97438 * 18 17 4 36 36 H 1.08991 * 109.47180 * 125.00421 * 20 19 18 37 37 H 0.96699 * 113.99839 * 180.02562 * 21 20 19 38 38 H 1.48494 * 110.00403 * 300.00365 * 22 20 19 39 39 H 1.48512 * 109.99789 * 61.31975 * 22 20 19 40 40 H 1.08002 * 120.00199 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1795 0.1478 0.0016 6 6 5.6003 0.3009 -0.0040 7 6 6.2519 -1.0580 -0.0013 8 8 5.5671 -2.0589 0.0044 9 7 7.5957 -1.1609 -0.0062 10 6 8.2292 -2.4819 -0.0041 11 1 7.5851 -3.2596 0.4065 12 6 8.8722 -2.8610 -1.3486 13 6 10.0295 -3.4645 -0.5354 14 1 9.8776 -4.5107 -0.2700 15 35 11.8018 -3.1221 -1.3142 16 6 9.6493 -2.4831 0.5859 17 6 4.0601 2.5235 -0.0051 18 6 3.3027 3.6800 -0.0057 19 6 1.9222 3.6058 0.0000 20 6 1.1014 4.8696 -0.0011 21 8 0.3693 4.9632 1.2226 22 14 2.2300 6.3429 -0.1638 23 6 1.2931 2.3749 0.0068 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 5.9097 0.8536 0.8832 28 1 5.9033 0.8478 -0.8968 29 1 8.1434 -0.3604 -0.0111 30 1 9.1639 -2.0007 -1.9510 31 1 8.3025 -3.6000 -1.9121 32 1 9.7070 -2.9171 1.5841 33 1 10.1535 -1.5195 0.5124 34 1 5.1384 2.5842 -0.0096 35 1 3.7905 4.6435 -0.0097 36 1 0.4059 4.8504 -0.8400 37 1 -0.1828 5.7542 1.2911 38 1 3.1833 6.3806 0.9741 39 1 2.9737 6.2737 -1.4474 40 1 0.2145 2.3196 0.0116 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17509654_60476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:01:30 Heat of formation + Delta-G solvation = -73.323420 kcal Electronic energy + Delta-G solvation = -24987.991761 eV Core-core repulsion = 21010.975020 eV Total energy + Delta-G solvation = -3977.016741 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.045 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.94313 -41.23174 -39.85786 -39.07579 -38.73082 -37.04151 -34.80242 -32.25272 -31.63496 -31.12980 -29.66064 -28.50634 -26.92121 -26.27494 -25.19713 -23.59542 -22.52161 -21.79367 -20.86911 -19.85588 -18.56291 -18.44815 -18.23252 -17.71315 -17.60979 -17.37699 -16.71286 -16.53105 -16.28773 -15.92172 -15.59790 -15.55514 -15.45286 -14.48422 -14.22541 -14.21394 -14.05715 -13.89671 -13.65714 -13.61176 -13.57200 -12.98090 -12.81396 -12.44936 -12.32311 -12.26322 -12.15876 -12.09637 -11.85060 -11.71801 -11.11993 -10.81891 -10.79253 -10.30791 -10.23803 -9.91219 -9.04047 -4.90090 0.03481 0.10194 0.66932 1.32132 1.33845 1.42613 1.68590 1.98839 2.21361 2.39396 2.49694 3.14878 3.20248 3.36905 3.44827 3.56245 3.65152 3.70859 3.76853 3.84844 3.91416 4.00619 4.10087 4.15244 4.26315 4.29244 4.35975 4.46422 4.48745 4.49967 4.56151 4.64103 4.74046 4.84329 4.84821 4.92677 4.95136 5.22702 5.34471 5.42951 5.85363 6.31105 6.42598 6.91556 7.03413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.084 3.916 4 C 0.086 3.914 5 O -0.309 6.309 6 C 0.031 3.969 7 C 0.517 3.483 8 O -0.568 6.568 9 N -0.697 5.697 10 C 0.123 3.877 11 H 0.106 0.894 12 C -0.139 4.139 13 C -0.067 4.067 14 H 0.136 0.864 15 Br -0.168 7.168 16 C -0.121 4.121 17 C -0.161 4.161 18 C -0.134 4.134 19 C -0.085 4.085 20 C -0.081 4.081 21 O -0.565 6.565 22 Si 0.777 3.223 23 C -0.147 4.147 24 H 0.068 0.932 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.423 0.577 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.172 0.828 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.404 0.596 38 H -0.291 1.291 39 H -0.285 1.285 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.379 7.522 -0.086 7.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.038 3.962 4 C 0.040 3.960 5 O -0.223 6.223 6 C -0.046 4.046 7 C 0.303 3.697 8 O -0.446 6.446 9 N -0.351 5.351 10 C 0.017 3.983 11 H 0.124 0.876 12 C -0.179 4.179 13 C -0.163 4.163 14 H 0.154 0.846 15 Br -0.088 7.088 16 C -0.160 4.160 17 C -0.179 4.179 18 C -0.151 4.151 19 C -0.086 4.086 20 C -0.190 4.190 21 O -0.375 6.375 22 Si 0.683 3.317 23 C -0.166 4.166 24 H 0.087 0.913 25 H 0.132 0.868 26 H 0.083 0.917 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.261 0.739 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.189 0.811 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.255 0.745 38 H -0.219 1.219 39 H -0.212 1.212 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.852 6.236 -0.313 6.302 hybrid contribution -0.277 -0.488 0.029 0.562 sum 0.575 5.748 -0.284 5.784 Atomic orbital electron populations 1.23350 0.76460 1.05492 1.02327 1.86198 1.23339 1.26083 1.88878 1.18646 0.89746 0.85845 1.01939 1.18480 0.88425 0.86200 1.02865 1.86220 1.18190 1.28599 1.89276 1.22800 0.79406 0.95575 1.06851 1.20470 0.83133 0.90600 0.75484 1.90772 1.64053 1.39952 1.49773 1.45594 1.05026 1.09924 1.74586 1.22405 0.93109 0.85833 0.96939 0.87578 1.23744 0.94630 1.02036 0.97456 1.26000 0.86918 1.04076 0.99321 0.84604 1.97456 1.29066 1.96552 1.85703 1.23601 0.93237 1.00453 0.98673 1.21262 1.02014 0.89499 1.05108 1.20828 0.93297 0.98255 1.02751 1.19485 0.93431 0.94496 1.01150 1.24882 1.01630 1.02074 0.90415 1.86449 1.64022 1.50308 1.36718 0.94271 0.78724 0.82334 0.76414 1.21077 1.00989 0.90047 1.04493 0.91313 0.86783 0.91709 0.85760 0.85693 0.73896 0.87711 0.90124 0.88174 0.86816 0.81074 0.85086 0.88906 0.74518 1.21903 1.21228 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.93 10.28 -79.65 -0.82 -4.75 16 3 C 0.08 0.87 6.70 22.57 0.15 1.02 16 4 C 0.09 0.75 6.70 22.57 0.15 0.90 16 5 O -0.31 -3.21 9.45 -67.05 -0.63 -3.84 16 6 C 0.03 -0.02 5.22 71.24 0.37 0.35 16 7 C 0.52 1.92 7.91 87.66 0.69 2.61 16 8 O -0.57 -8.82 16.10 16.03 0.26 -8.56 16 9 N -0.70 3.09 5.36 -440.03 -2.36 0.73 16 10 C 0.12 -0.42 4.24 45.51 0.19 -0.22 16 11 H 0.11 0.11 7.47 -2.38 -0.02 0.09 16 12 C -0.14 0.52 7.51 31.12 0.23 0.75 16 13 C -0.07 0.31 4.88 31.12 0.15 0.46 16 14 H 0.14 -0.78 8.14 -2.39 -0.02 -0.80 16 15 Br -0.17 -0.05 33.81 -20.37 -0.69 -0.73 16 16 C -0.12 0.87 7.46 31.12 0.23 1.10 16 17 C -0.16 -0.45 9.04 22.35 0.20 -0.25 16 18 C -0.13 -0.55 8.66 22.28 0.19 -0.36 16 19 C -0.09 -0.42 5.38 -19.86 -0.11 -0.53 16 20 C -0.08 0.10 2.79 71.24 0.20 0.30 16 21 O -0.56 0.51 12.81 -148.98 -1.91 -1.40 16 22 Si 0.78 -2.89 29.84 68.60 2.05 -0.84 16 23 C -0.15 -0.94 8.67 22.35 0.19 -0.74 16 24 H 0.07 -0.05 7.68 -2.38 -0.02 -0.07 16 25 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 26 H 0.06 0.03 7.65 -2.39 -0.02 0.01 16 27 H 0.12 -0.89 7.66 -2.38 -0.02 -0.91 16 28 H 0.13 -0.91 7.66 -2.39 -0.02 -0.93 16 29 H 0.42 -5.00 8.73 -92.71 -0.81 -5.81 16 30 H 0.10 -0.47 8.12 -2.39 -0.02 -0.49 16 31 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H 0.11 -1.05 8.10 -2.39 -0.02 -1.07 16 34 H 0.17 -0.91 6.30 -2.91 -0.02 -0.93 16 35 H 0.13 0.24 4.85 -2.91 -0.01 0.22 16 36 H 0.09 -0.48 7.96 -2.39 -0.02 -0.50 16 37 H 0.40 -4.68 8.74 -74.06 -0.65 -5.33 16 38 H -0.29 -0.89 7.04 99.48 0.70 -0.19 16 39 H -0.29 -0.37 7.11 99.48 0.71 0.34 16 40 H 0.15 0.41 6.30 -2.91 -0.02 0.40 16 Total: 0.00 -29.46 356.57 -0.46 -29.92 By element: Atomic # 1 Polarization: -16.73 SS G_CDS: -0.33 Total: -17.05 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 3.97 Total: 6.54 kcal Atomic # 7 Polarization: 3.09 SS G_CDS: -2.36 Total: 0.73 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -3.10 Total: -18.56 kcal Atomic # 14 Polarization: -2.89 SS G_CDS: 2.05 Total: -0.84 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.69 Total: -0.73 kcal Total: -29.46 -0.46 -29.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17509654_60476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.407 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds