Wall clock time and date at job start Sun Mar 7 2021 10:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52976 * 109.43474 * 2 1 4 4 C 1.53124 * 109.44249 * 181.68579 * 3 2 1 5 5 C 1.52849 * 109.21639 * 301.98282 * 4 3 2 6 6 C 1.53235 * 113.39453 * 286.06339 * 5 4 3 7 7 C 1.53843 * 83.15957 * 219.00444 * 6 5 4 8 8 N 1.46751 * 113.46773 * 187.29096 * 5 4 3 9 9 C 1.34780 * 136.09307 * 321.77567 * 8 5 4 10 10 O 1.21283 * 120.00221 * 359.97438 * 9 8 5 11 11 C 1.50704 * 120.00259 * 179.97438 * 9 8 5 12 12 N 1.46494 * 109.47122 * 180.02562 * 11 9 8 13 13 C 1.36848 * 125.05860 * 265.80876 * 12 11 9 14 14 C 1.34232 * 109.93326 * 179.97438 * 13 12 11 15 15 C 1.50706 * 126.50246 * 179.48409 * 14 13 12 16 16 O 1.42894 * 109.47273 * 254.98530 * 15 14 13 17 17 Si 1.86308 * 109.46610 * 14.97996 * 15 14 13 18 18 C 1.46494 * 107.00184 * 359.47025 * 14 13 12 19 19 C 1.39590 * 134.03458 * 179.97438 * 18 14 13 20 20 C 1.36668 * 119.76122 * 179.74107 * 19 18 14 21 21 C 1.38784 * 120.52827 * 0.23709 * 20 19 18 22 22 C 1.37787 * 120.66684 * 0.02562 * 21 20 19 23 23 C 1.37691 * 125.06511 * 85.00421 * 12 11 9 24 24 C 1.52842 * 112.68300 * 56.60858 * 5 4 3 25 25 C 1.52967 * 109.43626 * 120.21523 * 2 1 3 26 26 H 1.09000 * 109.47188 * 60.00248 * 1 2 3 27 27 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47507 * 300.00046 * 1 2 3 29 29 H 1.09003 * 109.40662 * 240.10872 * 2 1 3 30 30 H 1.08995 * 109.48020 * 61.69658 * 3 2 1 31 31 H 1.09003 * 109.48205 * 301.67923 * 3 2 1 32 32 H 1.08996 * 109.51293 * 182.05630 * 4 3 2 33 33 H 1.09003 * 109.55552 * 61.92949 * 4 3 2 34 34 H 1.08994 * 114.22067 * 332.76201 * 6 5 4 35 35 H 1.08999 * 114.21902 * 105.43363 * 6 5 4 36 36 H 1.08998 * 113.45496 * 271.28340 * 7 6 5 37 37 H 1.08998 * 113.55489 * 140.78129 * 7 6 5 38 38 H 1.09000 * 109.46797 * 59.99991 * 11 9 8 39 39 H 1.08996 * 109.46690 * 300.00228 * 11 9 8 40 40 H 1.07994 * 125.03242 * 359.42468 * 13 12 11 41 41 H 1.08992 * 109.46992 * 134.97967 * 15 14 13 42 42 H 0.96704 * 114.00283 * 179.97438 * 16 15 14 43 43 H 1.48497 * 109.99838 * 299.99817 * 17 15 14 44 44 H 1.48493 * 109.99697 * 61.31994 * 17 15 14 45 45 H 1.08002 * 120.12275 * 0.02679 * 19 18 14 46 46 H 1.07994 * 119.73473 * 180.25228 * 20 19 18 47 47 H 1.07996 * 119.66833 * 179.97438 * 21 20 19 48 48 H 1.08002 * 120.11354 * 180.02562 * 22 21 20 49 49 H 1.08998 * 109.51394 * 63.32592 * 24 5 4 50 50 H 1.08997 * 109.51491 * 183.48347 * 24 5 4 51 51 H 1.08997 * 109.47353 * 298.32100 * 25 2 1 52 52 H 1.09001 * 109.47100 * 58.32481 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0390 1.4426 0.0000 4 6 3.5696 1.4430 -0.0425 5 6 4.1065 0.6667 1.1598 6 6 3.9757 1.4280 2.4832 7 6 5.3582 0.8130 2.7614 8 7 5.5643 0.7507 1.3060 9 6 6.6247 0.7605 0.4742 10 8 6.4558 0.6857 -0.7245 11 6 8.0202 0.8643 1.0334 12 7 8.9887 0.8552 -0.0657 13 6 9.6282 -0.2575 -0.5407 14 6 10.4469 0.0807 -1.5492 15 6 11.3360 -0.8502 -2.3329 16 8 12.6929 -0.6714 -1.9219 17 14 10.8194 -2.6126 -2.0194 18 6 10.3121 1.5264 -1.7439 19 6 10.8915 2.4456 -2.6203 20 6 10.5412 3.7647 -2.5489 21 6 9.6173 4.1988 -1.6086 22 6 9.0373 3.3094 -0.7305 23 6 9.3793 1.9624 -0.7850 24 6 3.5696 -0.7628 1.2258 25 6 2.0390 -0.7259 1.2465 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8921 -0.5124 -0.8913 30 1 1.7005 1.9475 0.9047 31 1 1.6510 1.9650 -0.8745 32 1 3.9346 2.4694 -0.0057 33 1 3.9092 0.9687 -0.9633 34 1 3.9778 2.5127 2.3772 35 1 3.1826 1.0601 3.1342 36 1 5.3095 -0.1675 3.2350 37 1 6.0433 1.4928 3.2679 38 1 8.2110 0.0181 1.6934 39 1 8.1180 1.7929 1.5957 40 1 9.5003 -1.2581 -0.1550 41 1 11.2463 -0.6289 -3.3963 42 1 13.3225 -1.2404 -2.3855 43 1 10.9373 -2.9267 -0.5729 44 1 9.4203 -2.8197 -2.4719 45 1 11.6106 2.1149 -3.3551 46 1 10.9866 4.4748 -3.2298 47 1 9.3509 5.2445 -1.5642 48 1 8.3191 3.6570 -0.0027 49 1 3.9086 -1.3197 0.3524 50 1 3.9343 -1.2472 2.1316 51 1 1.7001 -0.1983 2.1381 52 1 1.6510 -1.7445 1.2576 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17514090_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:02:57 Heat of formation + Delta-G solvation = 38.574476 kcal Electronic energy + Delta-G solvation = -32564.305161 eV Core-core repulsion = 28497.068256 eV Total energy + Delta-G solvation = -4067.236905 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.76064 -42.20491 -39.73635 -38.15433 -37.79945 -37.57894 -34.36493 -32.56747 -32.08338 -31.52648 -30.61217 -30.40177 -28.80735 -26.78784 -25.72323 -24.43100 -23.92513 -23.41145 -23.08209 -22.24019 -20.96532 -20.66702 -19.35343 -18.37765 -18.33912 -18.08907 -17.87537 -17.08925 -16.96307 -16.56997 -15.96351 -15.67630 -15.60388 -15.35543 -15.29881 -15.13536 -14.95964 -14.90623 -14.77093 -14.60773 -14.24391 -13.97274 -13.79483 -13.66884 -13.44729 -13.41806 -13.32983 -12.90095 -12.81877 -12.69865 -12.55635 -12.54740 -12.47361 -12.15735 -12.12410 -11.86925 -11.79078 -11.58813 -11.31368 -11.11545 -11.00408 -10.65585 -10.22611 -9.85274 -9.31187 -8.79213 -5.03677 -0.00777 0.51503 1.17100 1.27253 1.28974 1.42669 1.63796 1.81739 1.93202 2.82824 3.10332 3.31463 3.38684 3.46411 3.55434 3.60161 3.66164 3.71782 3.72533 3.86273 3.93857 3.95719 4.00470 4.06741 4.13704 4.16515 4.21621 4.30038 4.32591 4.39262 4.43522 4.47113 4.54867 4.56218 4.57429 4.65768 4.68009 4.77897 4.80625 4.85019 4.85955 4.92035 4.97433 5.02029 5.03374 5.10807 5.16029 5.19704 5.31867 5.36364 5.39560 5.47059 5.53607 5.60646 5.61122 6.00469 6.11030 6.54383 6.86542 6.96891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.104 4.104 4 C -0.110 4.110 5 C 0.154 3.846 6 C -0.132 4.132 7 C 0.094 3.906 8 N -0.644 5.644 9 C 0.514 3.486 10 O -0.575 6.575 11 C 0.096 3.904 12 N -0.468 5.468 13 C 0.050 3.950 14 C -0.176 4.176 15 C -0.045 4.045 16 O -0.564 6.564 17 Si 0.787 3.213 18 C -0.119 4.119 19 C -0.080 4.080 20 C -0.150 4.150 21 C -0.100 4.100 22 C -0.138 4.138 23 C 0.090 3.910 24 C -0.111 4.111 25 C -0.103 4.103 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.172 0.828 41 H 0.076 0.924 42 H 0.400 0.600 43 H -0.281 1.281 44 H -0.304 1.304 45 H 0.131 0.869 46 H 0.147 0.853 47 H 0.151 0.849 48 H 0.129 0.871 49 H 0.036 0.964 50 H 0.089 0.911 51 H 0.090 0.910 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -1.242 6.690 7.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.142 4.142 4 C -0.148 4.148 5 C 0.070 3.930 6 C -0.170 4.170 7 C -0.027 4.027 8 N -0.378 5.378 9 C 0.303 3.697 10 O -0.454 6.454 11 C -0.028 4.028 12 N -0.151 5.151 13 C -0.076 4.076 14 C -0.184 4.184 15 C -0.155 4.155 16 O -0.373 6.373 17 Si 0.692 3.308 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.168 4.168 21 C -0.119 4.119 22 C -0.158 4.158 23 C -0.015 4.015 24 C -0.149 4.149 25 C -0.141 4.141 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.189 0.811 41 H 0.094 0.906 42 H 0.250 0.750 43 H -0.207 1.207 44 H -0.232 1.232 45 H 0.149 0.851 46 H 0.165 0.835 47 H 0.169 0.831 48 H 0.147 0.853 49 H 0.055 0.945 50 H 0.108 0.892 51 H 0.108 0.892 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.967 -1.385 6.991 7.720 hybrid contribution -0.164 0.354 -0.661 0.768 sum -3.131 -1.031 6.329 7.136 Atomic orbital electron populations 1.21801 0.94063 1.02087 1.02283 1.21146 0.96341 0.95750 0.98272 1.21533 0.92847 0.96817 1.02961 1.21570 0.97018 0.99124 0.97087 1.22049 0.78091 0.96189 0.96651 1.23528 0.98100 1.00856 0.94470 1.23452 0.96894 1.02906 0.79400 1.50069 1.06129 1.71355 1.10272 1.20938 0.86616 0.76179 0.85976 1.90774 1.86134 1.51456 1.16994 1.21817 0.83801 1.09055 0.88137 1.43427 1.36270 1.05344 1.30079 1.21689 0.97178 0.91533 0.97159 1.20048 1.03930 0.92909 1.01487 1.24199 0.84419 1.07977 0.98860 1.86479 1.15841 1.67786 1.67197 0.94345 0.80334 0.75986 0.80134 1.19356 1.00511 0.93409 0.99065 1.20522 0.98871 0.92759 0.97724 1.20998 0.99705 0.95613 1.00532 1.21199 0.96121 1.00167 0.94406 1.20245 1.03322 0.89274 1.02997 1.18501 0.98668 0.89477 0.94885 1.21666 0.97162 0.93926 1.02168 1.21557 0.92849 1.01321 0.98399 0.93150 0.92445 0.91324 0.93620 0.89583 0.92352 0.92645 0.95000 0.88273 0.86368 0.87332 0.87775 0.83506 0.84048 0.81132 0.90609 0.74960 1.20748 1.23249 0.85118 0.83542 0.83095 0.85297 0.94489 0.89203 0.89185 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.32 9.19 71.98 0.66 0.98 16 2 C -0.10 0.03 2.67 -10.81 -0.03 0.00 16 3 C -0.10 -0.01 5.12 30.63 0.16 0.15 16 4 C -0.11 -0.51 4.84 30.59 0.15 -0.36 16 5 C 0.15 -0.08 0.98 -0.05 0.00 -0.08 16 6 C -0.13 1.07 7.16 30.96 0.22 1.29 16 7 C 0.09 -0.84 8.07 82.97 0.67 -0.17 16 8 N -0.64 -0.47 3.37 -813.93 -2.74 -3.21 16 9 C 0.51 3.89 8.05 87.66 0.71 4.59 16 10 O -0.57 -10.96 16.25 -3.04 -0.05 -11.01 16 11 C 0.10 0.18 6.31 85.64 0.54 0.72 16 12 N -0.47 -4.80 2.27 -520.00 -1.18 -5.98 16 13 C 0.05 0.57 9.89 83.00 0.82 1.39 16 14 C -0.18 -2.29 5.61 -18.62 -0.10 -2.39 16 15 C -0.04 -0.27 3.05 71.24 0.22 -0.05 16 16 O -0.56 -2.74 12.86 -148.98 -1.92 -4.66 16 17 Si 0.79 1.57 30.79 68.60 2.11 3.68 16 18 C -0.12 -1.77 6.35 -20.20 -0.13 -1.90 16 19 C -0.08 -0.91 10.05 22.23 0.22 -0.69 16 20 C -0.15 -1.16 9.97 22.03 0.22 -0.94 16 21 C -0.10 -0.70 10.01 22.29 0.22 -0.48 16 22 C -0.14 -1.31 10.00 22.37 0.22 -1.08 16 23 C 0.09 1.19 6.80 39.03 0.27 1.45 16 24 C -0.11 0.13 5.25 30.58 0.16 0.30 16 25 C -0.10 0.38 5.11 30.62 0.16 0.54 16 26 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.07 -0.30 8.14 -2.39 -0.02 -0.31 16 29 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.09 -0.32 7.94 -2.39 -0.02 -0.34 16 31 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.05 0.34 8.12 -2.39 -0.02 0.32 16 33 H 0.03 0.42 7.65 -2.39 -0.02 0.40 16 34 H 0.10 -0.77 8.10 -2.39 -0.02 -0.79 16 35 H 0.12 -1.45 7.34 -2.39 -0.02 -1.47 16 36 H 0.11 -1.31 7.28 -2.39 -0.02 -1.33 16 37 H 0.10 -1.33 8.14 -2.39 -0.02 -1.35 16 38 H 0.15 -0.68 8.12 -2.39 -0.02 -0.70 16 39 H 0.14 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.17 1.29 6.30 -2.91 -0.02 1.27 16 41 H 0.08 0.30 7.96 -2.39 -0.02 0.28 16 42 H 0.40 -2.63 8.74 -74.05 -0.65 -3.28 16 43 H -0.28 -1.72 7.04 99.48 0.70 -1.02 16 44 H -0.30 -3.01 7.11 99.48 0.71 -2.31 16 45 H 0.13 1.07 8.06 -2.91 -0.02 1.04 16 46 H 0.15 0.32 8.06 -2.91 -0.02 0.30 16 47 H 0.15 0.15 8.06 -2.91 -0.02 0.13 16 48 H 0.13 0.67 8.06 -2.91 -0.02 0.64 16 49 H 0.04 0.20 8.14 -2.39 -0.02 0.19 16 50 H 0.09 -0.47 7.01 -2.39 -0.02 -0.48 16 51 H 0.09 -0.68 7.34 -2.39 -0.02 -0.70 16 52 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 Total: 0.00 -30.07 411.56 1.87 -28.20 By element: Atomic # 1 Polarization: -10.58 SS G_CDS: 0.29 Total: -10.29 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.35 Total: 3.27 kcal Atomic # 7 Polarization: -5.27 SS G_CDS: -3.92 Total: -9.19 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -1.96 Total: -15.67 kcal Atomic # 14 Polarization: 1.57 SS G_CDS: 2.11 Total: 3.68 kcal Total: -30.07 1.87 -28.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17514090_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.773 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds