Wall clock time and date at job start Sun Mar 7 2021 08:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86298 * 109.47352 * 2 1 4 4 C 1.50707 * 109.46988 * 119.99976 * 2 1 3 5 5 C 1.38399 * 119.82746 * 64.99962 * 4 2 1 6 6 C 1.37889 * 120.16951 * 180.02562 * 5 4 2 7 7 C 1.39836 * 119.82865 * 359.97438 * 6 5 4 8 8 C 1.47211 * 120.17203 * 179.97438 * 7 6 5 9 9 C 1.34804 * 119.99794 * 180.02562 * 8 7 6 10 10 C 1.46432 * 119.99782 * 180.02562 * 9 8 7 11 11 O 1.21703 * 119.99903 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00077 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27581 * 12 10 9 14 14 H 1.09002 * 112.85022 * 335.91707 * 13 12 10 15 15 C 1.53782 * 113.61718 * 107.22525 * 13 12 10 16 16 C 1.53774 * 87.08161 * 89.11276 * 15 13 12 17 17 H 1.09000 * 113.69696 * 270.87608 * 16 15 13 18 18 C 1.53000 * 113.61649 * 139.98421 * 16 15 13 19 19 N 1.47309 * 110.60120 * 198.97675 * 18 16 15 20 20 C 1.34866 * 106.43814 * 241.51730 * 19 18 16 21 21 O 1.21539 * 123.73452 * 179.97438 * 20 19 18 22 22 N 1.33793 * 112.49791 * 359.86157 * 20 19 18 23 23 C 1.34764 * 111.64595 * 0.08713 * 22 20 19 24 24 O 1.21238 * 127.15847 * 180.02562 * 23 22 20 25 25 C 1.53781 * 113.61158 * 204.72374 * 13 12 10 26 26 C 1.39839 * 119.65726 * 0.24919 * 7 6 5 27 27 C 1.37890 * 119.82810 * 359.53715 * 26 7 6 28 28 H 0.96699 * 113.99862 * 59.99530 * 1 2 3 29 29 H 1.09004 * 109.47412 * 239.99868 * 2 1 3 30 30 H 1.48501 * 110.00149 * 298.67921 * 3 2 1 31 31 H 1.48499 * 110.00380 * 60.00072 * 3 2 1 32 32 H 1.07997 * 119.91635 * 359.97438 * 5 4 2 33 33 H 1.07996 * 120.08538 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.99663 * 359.97438 * 8 7 6 35 35 H 1.08001 * 120.00538 * 359.97438 * 9 8 7 36 36 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 37 37 H 1.08999 * 113.61704 * 203.66488 * 15 13 12 38 38 H 1.09006 * 113.61098 * 334.56706 * 15 13 12 39 39 H 1.09001 * 110.53023 * 321.79799 * 18 16 15 40 40 H 0.97000 * 126.69621 * 61.43831 * 19 18 16 41 41 H 0.97004 * 124.17538 * 180.02562 * 22 20 19 42 42 H 1.08995 * 113.61890 * 25.43111 * 25 13 12 43 43 H 1.09004 * 113.61421 * 156.25407 * 25 13 12 44 44 H 1.08005 * 120.08168 * 179.72469 * 26 7 6 45 45 H 1.07999 * 119.91467 * 180.20861 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6823 -2.0619 1.3950 6 6 2.1381 -2.7188 2.5184 7 6 2.8541 -2.0161 3.4925 8 6 3.3438 -2.7098 4.6951 9 6 4.0332 -2.0288 5.6322 10 6 4.5208 -2.7189 6.8281 11 8 4.3033 -3.9072 6.9762 12 7 5.2096 -2.0381 7.7654 13 6 5.7026 -2.7299 8.9589 14 1 5.1319 -3.6284 9.1934 15 6 7.2250 -2.9470 8.9604 16 6 7.3411 -1.5740 9.6430 17 1 7.4225 -0.7423 8.9432 18 6 8.3984 -1.5262 10.7478 19 7 8.1613 -0.3806 11.6430 20 6 9.2517 0.4077 11.5510 21 8 9.3865 1.4477 12.1654 22 7 10.1692 -0.0837 10.7103 23 6 9.7689 -1.2483 10.1630 24 8 10.3784 -1.9318 9.3684 25 6 5.9130 -1.8011 10.1664 26 6 3.0975 -0.6497 3.3213 27 6 2.6389 -0.0079 2.1903 28 1 -0.3933 0.4418 -0.7650 29 1 1.7923 -0.5139 -0.8900 30 1 1.5880 2.4585 -1.2242 31 1 1.5616 2.4679 1.2085 32 1 1.1288 -2.6032 0.6420 33 1 1.9427 -3.7733 2.6455 34 1 3.1500 -3.7641 4.8268 35 1 4.2266 -0.9744 5.5007 36 1 5.3826 -1.0909 7.6475 37 1 7.5472 -3.7764 9.5900 38 1 7.6627 -2.9769 7.9625 39 1 8.4042 -2.4589 11.3120 40 1 7.3750 -0.2248 12.1892 41 1 11.0174 0.3458 10.5178 42 1 5.2916 -0.9060 10.1423 43 1 5.8751 -2.3170 11.1259 44 1 3.6459 -0.0993 4.0715 45 1 2.8290 1.0466 2.0550 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_12360594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:18:27 Heat of formation + Delta-G solvation = -40.936471 kcal Electronic energy + Delta-G solvation = -29791.216039 eV Core-core repulsion = 25356.127702 eV Total energy + Delta-G solvation = -4435.088337 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.141 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.41326 -41.24479 -40.54748 -39.78806 -39.32482 -37.87362 -37.21502 -35.16642 -35.01939 -33.92703 -32.21458 -31.34100 -29.47899 -27.24405 -26.68294 -25.29719 -24.11000 -23.85880 -23.57346 -22.50999 -22.06166 -20.57693 -20.27622 -19.39287 -18.71582 -18.56892 -17.91718 -17.69236 -17.39833 -17.16239 -16.90758 -16.61883 -16.47131 -16.20920 -15.94776 -15.85958 -15.47762 -15.40234 -15.26088 -15.02207 -14.74934 -14.35216 -14.11193 -13.98880 -13.88463 -13.57723 -13.46548 -13.31677 -13.00818 -12.59147 -12.32379 -12.29301 -12.05572 -11.80682 -11.72614 -11.50947 -11.44105 -11.31777 -11.14887 -11.06835 -10.50337 -10.46837 -10.08242 -9.98058 -9.23724 -4.93627 -0.54814 0.39568 0.52779 0.88418 1.28740 1.41452 1.59278 1.93371 1.93423 2.15603 2.16658 2.23184 2.77498 2.86731 3.37093 3.39135 3.56750 3.64048 3.64658 3.75041 3.83235 3.85060 3.94114 4.02897 4.17159 4.21865 4.30402 4.32206 4.38802 4.40782 4.55623 4.70399 4.81491 4.83817 4.87987 4.97219 4.98166 5.03822 5.08829 5.09474 5.16108 5.17904 5.39006 5.48328 5.59784 5.62476 5.81452 5.87848 5.89484 6.37834 6.54255 6.55689 7.11060 7.22935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.091 4.091 3 Si 0.766 3.234 4 C -0.075 4.075 5 C -0.108 4.108 6 C -0.102 4.102 7 C -0.082 4.082 8 C -0.020 4.020 9 C -0.210 4.210 10 C 0.545 3.455 11 O -0.589 6.589 12 N -0.697 5.697 13 C 0.109 3.891 14 H 0.090 0.910 15 C -0.138 4.138 16 C -0.105 4.105 17 H 0.103 0.897 18 C 0.110 3.890 19 N -0.700 5.700 20 C 0.703 3.297 21 O -0.587 6.587 22 N -0.677 5.677 23 C 0.528 3.472 24 O -0.493 6.493 25 C -0.118 4.118 26 C -0.095 4.095 27 C -0.126 4.126 28 H 0.395 0.605 29 H 0.095 0.905 30 H -0.289 1.289 31 H -0.295 1.295 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.162 0.838 36 H 0.417 0.583 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.159 0.841 40 H 0.453 0.547 41 H 0.437 0.563 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.158 0.842 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 1.886 -1.093 2.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.199 4.199 3 Si 0.672 3.328 4 C -0.075 4.075 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.082 4.082 8 C -0.040 4.040 9 C -0.230 4.230 10 C 0.336 3.664 11 O -0.471 6.471 12 N -0.347 5.347 13 C 0.003 3.997 14 H 0.108 0.892 15 C -0.178 4.178 16 C -0.124 4.124 17 H 0.121 0.879 18 C 0.002 3.998 19 N -0.365 5.365 20 C 0.402 3.598 21 O -0.463 6.463 22 N -0.347 5.347 23 C 0.315 3.685 24 O -0.363 6.363 25 C -0.156 4.156 26 C -0.113 4.113 27 C -0.143 4.143 28 H 0.245 0.755 29 H 0.113 0.887 30 H -0.217 1.217 31 H -0.222 1.222 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.180 0.820 36 H 0.254 0.746 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.176 0.824 40 H 0.301 0.699 41 H 0.280 0.720 42 H 0.112 0.888 43 H 0.141 0.859 44 H 0.176 0.824 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.027 1.701 -0.513 1.777 hybrid contribution -0.918 0.409 -0.661 1.203 sum -0.945 2.110 -1.174 2.593 Atomic orbital electron populations 1.86545 1.18532 1.80735 1.51076 1.25093 0.84090 1.12096 0.98647 0.94114 0.90271 0.72026 0.76435 1.19690 0.97892 0.94313 0.95641 1.21105 0.99125 0.94189 0.98194 1.21629 0.96395 1.00802 0.93214 1.19131 1.00138 0.94183 0.94746 1.22357 0.91294 0.99607 0.90696 1.23017 1.03607 1.02101 0.94304 1.18692 0.77428 0.86301 0.84018 1.90822 1.59576 1.17399 1.79332 1.45467 1.55169 1.13590 1.20497 1.21896 0.94891 0.97201 0.85670 0.89211 1.23461 0.95626 0.97006 1.01674 1.22791 0.94107 0.99545 0.95976 0.87912 1.22276 0.91476 0.93335 0.92719 1.45521 1.20131 1.23086 1.47769 1.16069 0.81449 0.82971 0.79307 1.91072 1.80221 1.24702 1.50338 1.44362 1.22382 1.24928 1.43076 1.21177 0.88439 0.79578 0.79336 1.90881 1.61882 1.51609 1.31966 1.23332 0.93618 1.00468 0.98152 1.21631 0.98619 0.93303 0.97700 1.21166 0.98947 1.00364 0.93842 0.75453 0.88715 1.21652 1.22215 0.85090 0.84272 0.85801 0.82043 0.74616 0.87339 0.91985 0.82404 0.69928 0.72013 0.88820 0.85943 0.82426 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.93 12.81 -148.98 -1.91 -2.84 16 2 C -0.09 0.13 2.79 71.24 0.20 0.33 16 3 Si 0.77 -2.51 29.83 68.60 2.05 -0.47 16 4 C -0.08 -0.08 5.39 -19.78 -0.11 -0.19 16 5 C -0.11 -0.20 9.66 22.23 0.21 0.02 16 6 C -0.10 -0.12 9.80 22.57 0.22 0.10 16 7 C -0.08 -0.03 5.87 -20.15 -0.12 -0.15 16 8 C -0.02 -0.01 9.46 23.84 0.23 0.21 16 9 C -0.21 0.45 9.41 23.62 0.22 0.67 16 10 C 0.55 1.19 7.74 86.38 0.67 1.86 16 11 O -0.59 -6.84 15.83 -4.36 -0.07 -6.91 16 12 N -0.70 3.47 5.26 -444.25 -2.34 1.14 16 13 C 0.11 -0.64 4.32 45.52 0.20 -0.44 16 14 H 0.09 -0.09 7.47 -2.39 -0.02 -0.11 16 15 C -0.14 0.92 7.44 31.12 0.23 1.15 16 16 C -0.10 1.14 3.27 -10.27 -0.03 1.10 16 17 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 18 C 0.11 -1.11 3.40 44.37 0.15 -0.96 16 19 N -0.70 6.35 6.14 -459.13 -2.82 3.53 16 20 C 0.70 -0.65 9.00 179.33 1.61 0.96 16 21 O -0.59 -5.03 18.04 -3.84 -0.07 -5.10 16 22 N -0.68 2.24 5.70 -440.86 -2.51 -0.28 16 23 C 0.53 -1.66 8.14 87.94 0.72 -0.94 16 24 O -0.49 -1.99 18.02 -2.90 -0.05 -2.04 16 25 C -0.12 1.53 7.26 31.12 0.23 1.75 16 26 C -0.10 0.22 9.41 22.57 0.21 0.43 16 27 C -0.13 0.15 8.65 22.23 0.19 0.34 16 28 H 0.40 -2.47 8.74 -74.06 -0.65 -3.11 16 29 H 0.09 -0.49 7.96 -2.38 -0.02 -0.51 16 30 H -0.29 -0.38 7.11 99.48 0.71 0.33 16 31 H -0.29 -0.98 7.04 99.48 0.70 -0.28 16 32 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 33 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 34 H 0.12 0.40 7.52 -2.91 -0.02 0.37 16 35 H 0.16 -1.50 6.07 -2.91 -0.02 -1.52 16 36 H 0.42 -4.59 8.68 -92.71 -0.80 -5.40 16 37 H 0.11 -0.90 8.00 -2.39 -0.02 -0.92 16 38 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 39 H 0.16 -2.28 8.01 -2.39 -0.02 -2.30 16 40 H 0.45 -5.92 8.96 -92.71 -0.83 -6.75 16 41 H 0.44 -2.16 8.96 -92.71 -0.83 -2.99 16 42 H 0.09 -1.33 8.14 -2.39 -0.02 -1.35 16 43 H 0.12 -1.98 8.10 -2.39 -0.02 -2.00 16 44 H 0.16 -1.35 6.17 -2.91 -0.02 -1.36 16 45 H 0.14 -0.70 4.84 -2.91 -0.01 -0.71 16 Total: 0.00 -32.12 386.84 -4.67 -36.78 By element: Atomic # 1 Polarization: -28.10 SS G_CDS: -1.98 Total: -30.07 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 5.03 Total: 6.26 kcal Atomic # 7 Polarization: 12.06 SS G_CDS: -7.67 Total: 4.39 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -2.10 Total: -16.89 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.05 Total: -0.47 kcal Total: -32.12 -4.67 -36.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_12360594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.155 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds