Wall clock time and date at job start Sun Mar 7 2021 08:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86295 * 109.47177 * 2 1 4 4 C 1.50701 * 109.46982 * 120.00117 * 2 1 3 5 5 C 1.38609 * 119.84184 * 74.99789 * 4 2 1 6 6 F 1.35103 * 119.91907 * 359.97438 * 5 4 2 7 7 C 1.38117 * 120.16615 * 179.97438 * 5 4 2 8 8 C 1.39611 * 119.84957 * 0.02562 * 7 5 4 9 9 C 1.47694 * 120.15544 * 179.97438 * 8 7 5 10 10 O 1.21573 * 120.00145 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99918 * 0.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27859 * 11 9 8 13 13 H 1.09001 * 112.85160 * 25.05344 * 12 11 9 14 14 C 1.53784 * 113.61507 * 156.25317 * 12 11 9 15 15 C 1.53777 * 87.08269 * 89.11382 * 14 12 11 16 16 H 1.09007 * 113.61513 * 270.88559 * 15 14 12 17 17 C 1.52991 * 113.61535 * 140.06799 * 15 14 12 18 18 N 1.47310 * 110.59948 * 296.46630 * 17 15 14 19 19 C 1.34866 * 106.44277 * 241.52234 * 18 17 15 20 20 O 1.21544 * 123.72888 * 179.97438 * 19 18 17 21 21 N 1.33786 * 112.49933 * 359.86363 * 19 18 17 22 22 C 1.34772 * 111.64452 * 0.08609 * 21 19 18 23 23 O 1.21236 * 127.15710 * 180.02562 * 22 21 19 24 24 C 1.53781 * 113.61116 * 253.85697 * 12 11 9 25 25 C 1.39844 * 119.68998 * 0.25211 * 8 7 5 26 26 F 1.35106 * 120.08595 * 179.74912 * 25 8 7 27 27 C 1.38229 * 119.84307 * 255.01895 * 4 2 1 28 28 H 0.96701 * 114.00195 * 300.00110 * 1 2 3 29 29 H 1.09001 * 109.46544 * 240.00046 * 2 1 3 30 30 H 1.48497 * 110.00023 * 299.99886 * 3 2 1 31 31 H 1.48500 * 110.00069 * 61.31855 * 3 2 1 32 32 H 1.07998 * 120.07437 * 180.02562 * 7 5 4 33 33 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 34 34 H 1.08996 * 113.61507 * 203.66303 * 14 12 11 35 35 H 1.09002 * 113.61214 * 334.47664 * 14 12 11 36 36 H 1.08993 * 110.53888 * 59.29691 * 17 15 14 37 37 H 0.97001 * 126.68927 * 61.44033 * 18 17 15 38 38 H 0.97003 * 124.18225 * 180.02562 * 21 19 18 39 39 H 1.08993 * 113.61427 * 25.43567 * 24 12 11 40 40 H 1.09003 * 113.61197 * 156.33752 * 24 12 11 41 41 H 1.08003 * 119.92358 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8678 -2.0932 1.3028 6 9 1.3557 -2.7991 0.2709 7 6 2.3267 -2.7512 2.4271 8 6 2.8552 -2.0203 3.4928 9 6 3.3473 -2.7170 4.6985 10 8 3.8074 -2.0779 5.6247 11 7 3.2874 -4.0615 4.7716 12 6 3.7699 -4.7521 5.9700 13 1 3.7409 -4.1246 6.8608 14 6 3.1434 -6.1416 6.1747 15 6 4.2961 -6.7000 5.3238 16 1 4.0809 -6.7187 4.2553 17 6 4.8521 -8.0282 5.8410 18 7 5.4479 -7.8554 7.1771 19 6 6.7525 -8.1756 7.0577 20 8 7.5431 -8.1410 7.9802 21 7 7.0788 -8.5377 5.8118 22 6 6.0153 -8.4889 4.9853 23 8 5.9935 -8.7581 3.8034 24 6 5.1136 -5.4719 5.7671 25 6 2.9109 -0.6252 3.4157 26 9 3.4161 0.0904 4.4444 27 6 2.4528 0.0200 2.2818 28 1 -0.3934 0.4417 0.7650 29 1 1.7922 -0.5138 -0.8900 30 1 1.5615 2.4678 -1.2085 31 1 1.5879 2.4585 1.2242 32 1 2.2769 -3.8287 2.4817 33 1 2.9206 -4.5715 4.0324 34 1 3.1614 -6.4804 7.2105 35 1 2.1633 -6.2512 5.7104 36 1 4.0698 -8.7867 5.8652 37 1 4.9908 -7.5670 7.9826 38 1 7.9708 -8.8017 5.5369 39 1 5.7238 -5.0418 4.9729 40 1 5.6693 -5.6280 6.6918 41 1 2.4986 1.0972 2.2190 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_12360598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:18:31 Heat of formation + Delta-G solvation = -134.108203 kcal Electronic energy + Delta-G solvation = -32928.352177 eV Core-core repulsion = 27834.079419 eV Total energy + Delta-G solvation = -5094.272758 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.106 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.11652 -50.08997 -43.52012 -41.56858 -40.33567 -39.73191 -39.30379 -37.77176 -37.17058 -35.21361 -34.19486 -32.94905 -31.38321 -29.69107 -27.87593 -26.79877 -25.30289 -24.41385 -24.02994 -23.57729 -22.51887 -22.07218 -20.46163 -19.75193 -19.26891 -18.86742 -18.54510 -18.11869 -17.93291 -17.71030 -17.36735 -17.14468 -16.88842 -16.86759 -16.63074 -16.51884 -16.23887 -16.02446 -15.89054 -15.68781 -15.53421 -15.41871 -15.39022 -15.05426 -14.80801 -14.48004 -14.15340 -13.82530 -13.52715 -13.25948 -13.19280 -12.96885 -12.52074 -12.42754 -12.32356 -11.93649 -11.82811 -11.50905 -11.45498 -11.28811 -11.19656 -10.78959 -10.61192 -10.46240 -10.21419 -9.82773 -4.96409 -0.82235 -0.31248 0.53179 1.15436 1.36741 1.42141 1.53321 1.80678 1.90864 1.93449 2.16397 2.22524 2.78277 2.84242 2.90653 3.10065 3.24045 3.36166 3.44438 3.46143 3.50206 3.60966 3.76678 3.78321 4.14237 4.18779 4.22261 4.31603 4.37881 4.40840 4.52028 4.64668 4.68833 4.72552 4.73877 4.82282 4.91851 4.99413 5.02844 5.10210 5.37448 5.48873 5.79031 5.88147 6.29097 6.37422 6.38774 6.98192 7.09494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.086 4.086 3 Si 0.770 3.230 4 C -0.091 4.091 5 C 0.104 3.896 6 F -0.127 7.127 7 C -0.075 4.075 8 C -0.147 4.147 9 C 0.560 3.440 10 O -0.560 6.560 11 N -0.689 5.689 12 C 0.113 3.887 13 H 0.090 0.910 14 C -0.114 4.114 15 C -0.106 4.106 16 H 0.127 0.873 17 C 0.111 3.889 18 N -0.702 5.702 19 C 0.703 3.297 20 O -0.587 6.587 21 N -0.678 5.678 22 C 0.530 3.470 23 O -0.496 6.496 24 C -0.154 4.154 25 C 0.139 3.861 26 F -0.125 7.125 27 C -0.131 4.131 28 H 0.390 0.610 29 H 0.133 0.867 30 H -0.295 1.295 31 H -0.271 1.271 32 H 0.183 0.817 33 H 0.417 0.583 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.169 0.831 37 H 0.452 0.548 38 H 0.436 0.564 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -2.506 -1.990 5.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.195 4.195 3 Si 0.674 3.326 4 C -0.092 4.092 5 C 0.084 3.916 6 F -0.105 7.105 7 C -0.094 4.094 8 C -0.152 4.152 9 C 0.347 3.653 10 O -0.439 6.439 11 N -0.342 5.342 12 C 0.008 3.992 13 H 0.108 0.892 14 C -0.152 4.152 15 C -0.125 4.125 16 H 0.145 0.855 17 C 0.003 3.997 18 N -0.368 5.368 19 C 0.403 3.597 20 O -0.464 6.464 21 N -0.348 5.348 22 C 0.317 3.683 23 O -0.367 6.367 24 C -0.193 4.193 25 C 0.118 3.882 26 F -0.103 7.103 27 C -0.150 4.150 28 H 0.240 0.760 29 H 0.150 0.850 30 H -0.222 1.222 31 H -0.197 1.197 32 H 0.200 0.800 33 H 0.256 0.744 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.186 0.814 37 H 0.300 0.700 38 H 0.279 0.721 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.749 -1.681 -2.009 4.573 hybrid contribution -0.575 -0.234 0.390 0.733 sum -4.324 -1.914 -1.618 4.998 Atomic orbital electron populations 1.86658 1.17438 1.80388 1.50280 1.25280 0.84201 1.12519 0.97453 0.93835 0.90157 0.71251 0.77358 1.20439 0.98822 0.92675 0.97285 1.17354 0.99140 0.88998 0.86063 1.91578 1.84373 1.78153 1.56438 1.21359 0.95782 1.02423 0.89853 1.19811 1.06405 0.92293 0.96663 1.18047 0.78227 0.83082 0.85907 1.90883 1.46427 1.66905 1.39641 1.45413 1.63083 1.05117 1.20585 1.21873 0.95146 0.94100 0.88076 0.89203 1.23337 0.98412 0.91113 1.02355 1.23012 0.97462 0.89782 1.02265 0.85500 1.22126 0.95456 1.01303 0.80836 1.45571 1.07441 1.71160 1.12655 1.16053 0.84075 0.77454 0.82159 1.91077 1.54031 1.59659 1.41628 1.44368 1.15539 1.64115 1.10793 1.21192 0.85782 0.74797 0.86514 1.90873 1.84390 1.47214 1.14181 1.23602 0.97028 0.96128 1.02576 1.17811 0.96286 0.88528 0.85553 1.91606 1.84092 1.77626 1.57009 1.21097 1.00348 1.02362 0.91145 0.76017 0.84970 1.22220 1.19673 0.79951 0.74400 0.86421 0.87683 0.81365 0.69998 0.72104 0.92146 0.88830 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.48 12.88 -148.98 -1.92 -1.44 16 2 C -0.09 0.35 2.44 71.24 0.17 0.53 16 3 Si 0.77 -4.11 30.24 68.60 2.07 -2.04 16 4 C -0.09 0.36 5.27 -19.78 -0.10 0.25 16 5 C 0.10 -0.37 7.23 22.33 0.16 -0.21 16 6 F -0.13 0.09 16.73 44.97 0.75 0.84 16 7 C -0.08 0.48 9.52 22.57 0.21 0.70 16 8 C -0.15 0.17 5.88 -20.06 -0.12 0.05 16 9 C 0.56 0.98 7.77 86.74 0.67 1.65 16 10 O -0.56 -6.37 14.96 -3.95 -0.06 -6.43 16 11 N -0.69 4.52 5.21 -443.04 -2.31 2.21 16 12 C 0.11 -0.80 4.30 45.52 0.20 -0.61 16 13 H 0.09 -0.18 7.50 -2.39 -0.02 -0.20 16 14 C -0.11 1.70 7.30 31.12 0.23 1.93 16 15 C -0.11 1.34 3.53 -10.18 -0.04 1.31 16 16 H 0.13 -1.76 8.14 -2.38 -0.02 -1.78 16 17 C 0.11 -1.29 3.70 44.37 0.16 -1.13 16 18 N -0.70 6.49 4.53 -459.15 -2.08 4.41 16 19 C 0.70 -0.46 8.88 179.33 1.59 1.13 16 20 O -0.59 -5.43 18.04 -3.85 -0.07 -5.50 16 21 N -0.68 2.19 5.70 -440.86 -2.51 -0.32 16 22 C 0.53 -2.18 8.13 87.94 0.72 -1.46 16 23 O -0.50 -1.28 18.02 -2.89 -0.05 -1.33 16 24 C -0.15 1.06 7.28 31.21 0.23 1.28 16 25 C 0.14 0.20 7.28 22.67 0.17 0.37 16 26 F -0.13 -0.97 15.55 44.97 0.70 -0.27 16 27 C -0.13 0.43 8.62 22.27 0.19 0.62 16 28 H 0.39 -2.82 8.70 -74.06 -0.64 -3.46 16 29 H 0.13 -0.67 7.89 -2.39 -0.02 -0.69 16 30 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 31 H -0.27 0.71 6.68 99.48 0.66 1.38 16 32 H 0.18 -2.50 6.40 -2.91 -0.02 -2.52 16 33 H 0.42 -5.53 6.74 -92.71 -0.62 -6.16 16 34 H 0.12 -2.07 7.51 -2.39 -0.02 -2.09 16 35 H 0.10 -1.84 8.14 -2.39 -0.02 -1.85 16 36 H 0.17 -2.91 8.14 -2.39 -0.02 -2.93 16 37 H 0.45 -5.89 8.50 -92.71 -0.79 -6.68 16 38 H 0.44 -1.99 8.96 -92.71 -0.83 -2.82 16 39 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.09 -0.50 6.75 -2.39 -0.02 -0.52 16 41 H 0.17 -1.02 4.83 -2.91 -0.01 -1.04 16 Total: 0.00 -32.31 359.12 -2.73 -35.04 By element: Atomic # 1 Polarization: -29.89 SS G_CDS: -1.70 Total: -31.59 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.44 Total: 6.41 kcal Atomic # 7 Polarization: 13.21 SS G_CDS: -6.91 Total: 6.30 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -2.10 Total: -14.70 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 1.45 Total: 0.57 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.07 Total: -2.04 kcal Total: -32.31 -2.73 -35.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_12360598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.064 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds