Wall clock time and date at job start Sun Mar 7 2021 08:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86295 * 109.47297 * 2 1 4 4 C 1.50703 * 109.46965 * 240.00234 * 2 1 3 5 5 C 1.37814 * 119.93927 * 255.32594 * 4 2 1 6 6 C 1.39672 * 119.87681 * 180.29797 * 5 4 2 7 7 C 1.47730 * 120.11552 * 179.67374 * 6 5 4 8 8 O 1.21563 * 120.00145 * 359.72435 * 7 6 5 9 9 N 1.34777 * 119.99572 * 179.72130 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72382 * 9 7 6 11 11 H 1.09002 * 112.85201 * 24.08188 * 10 9 7 12 12 C 1.53784 * 113.61491 * 155.28109 * 10 9 7 13 13 C 1.53777 * 87.08172 * 89.11442 * 12 10 9 14 14 H 1.08996 * 113.61378 * 270.80012 * 13 12 10 15 15 C 1.53000 * 113.61078 * 139.98329 * 13 12 10 16 16 N 1.47310 * 110.60022 * 296.46789 * 15 13 12 17 17 C 1.34875 * 106.43927 * 241.52272 * 16 15 13 18 18 O 1.21538 * 123.72748 * 179.97438 * 17 16 15 19 19 N 1.33791 * 112.49871 * 359.86536 * 17 16 15 20 20 C 1.34766 * 111.64799 * 0.08545 * 19 17 16 21 21 O 1.21228 * 127.15987 * 180.02562 * 20 19 17 22 22 C 1.53777 * 87.08146 * 25.43581 * 13 12 10 23 23 C 1.39631 * 119.76537 * 359.39516 * 6 5 4 24 24 C 1.37854 * 119.87873 * 0.28403 * 23 6 5 25 25 C 1.38636 * 120.11904 * 0.02562 * 24 23 6 26 26 F 1.35097 * 119.88174 * 179.97438 * 25 24 23 27 27 H 0.96703 * 113.99652 * 299.99309 * 1 2 3 28 28 H 1.09005 * 109.47384 * 120.00344 * 2 1 3 29 29 H 1.48498 * 110.00117 * 300.00209 * 3 2 1 30 30 H 1.48506 * 109.99808 * 61.32061 * 3 2 1 31 31 H 1.08000 * 120.06594 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.08999 * 113.61037 * 203.66621 * 12 10 9 34 34 H 1.09001 * 113.61313 * 334.56329 * 12 10 9 35 35 H 1.08998 * 110.54024 * 59.29942 * 15 13 12 36 36 H 0.96993 * 126.69323 * 61.44189 * 16 15 13 37 37 H 0.96995 * 124.17264 * 180.02562 * 19 17 16 38 38 H 1.08999 * 113.61239 * 220.01646 * 22 13 12 39 39 H 1.08999 * 113.61926 * 89.11880 * 22 13 12 40 40 H 1.07998 * 120.05858 * 180.29609 * 23 6 5 41 41 H 1.07997 * 119.93987 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4458 -1.9847 -1.1272 6 6 2.9167 -2.6395 -2.2675 7 6 3.4759 -4.0027 -2.1617 8 8 3.5314 -4.5547 -1.0800 9 7 3.9244 -4.6345 -3.2645 10 6 4.4845 -5.9841 -3.1587 11 1 4.1236 -6.5248 -2.2837 12 6 4.3936 -6.7929 -4.4635 13 6 5.7613 -6.1968 -4.8360 14 1 5.6935 -5.2516 -5.3746 15 6 6.7033 -7.1975 -5.5084 16 7 7.0342 -8.2978 -4.5865 17 6 8.3695 -8.2528 -4.4021 18 8 8.9790 -9.0272 -3.6908 19 7 8.9484 -7.2627 -5.0911 20 6 8.0454 -6.5550 -5.7981 21 8 8.2614 -5.6028 -6.5167 22 6 6.0123 -6.0321 -3.3278 23 6 2.8517 -2.0032 -3.5088 24 6 2.3290 -0.7310 -3.6018 25 6 1.8689 -0.0831 -2.4658 26 9 1.3581 1.1638 -2.5624 27 1 -0.3933 0.4416 0.7651 28 1 1.7924 -0.5139 0.8900 29 1 1.5615 2.4679 -1.2084 30 1 1.5879 2.4585 1.2243 31 1 2.4896 -2.4742 -0.1655 32 1 3.8805 -4.1940 -4.1276 33 1 4.4145 -7.8719 -4.3106 34 1 3.5844 -6.4730 -5.1200 35 1 6.2582 -7.5856 -6.4245 36 1 6.4130 -8.9285 -4.1902 37 1 9.9003 -7.0767 -5.0820 38 1 6.5099 -5.0979 -3.0675 39 1 6.4758 -6.9030 -2.8646 40 1 3.2100 -2.5070 -4.3943 41 1 2.2787 -0.2378 -4.5613 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:18:38 Heat of formation + Delta-G solvation = -85.112158 kcal Electronic energy + Delta-G solvation = -30161.068925 eV Core-core repulsion = 25538.374770 eV Total energy + Delta-G solvation = -4622.694155 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.116 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.39675 -43.50003 -41.55787 -40.22850 -39.69665 -39.08614 -37.78673 -37.14648 -35.15176 -34.05860 -32.86153 -31.85291 -29.57323 -27.00981 -26.75518 -25.76111 -24.47853 -23.69680 -23.36212 -22.49154 -21.59053 -20.40151 -19.25146 -18.95895 -18.87922 -18.65574 -18.03646 -17.87405 -17.68959 -17.14801 -16.95307 -16.81477 -16.60984 -16.21931 -16.06789 -15.60271 -15.50673 -15.38613 -15.34622 -15.03908 -14.91148 -14.69727 -14.52536 -14.04478 -13.89691 -13.58379 -13.41514 -13.17050 -12.88166 -12.47806 -12.31752 -12.30341 -11.78595 -11.49059 -11.45173 -11.39697 -11.18664 -11.15008 -10.78914 -10.43865 -10.22234 -10.10436 -9.79744 -4.98231 -0.50174 0.01452 0.55397 1.20107 1.44185 1.53447 1.57474 1.93957 1.95342 1.99983 2.18907 2.53417 2.93168 3.03155 3.18888 3.41340 3.49393 3.53765 3.59782 3.64909 3.66908 3.82626 3.98074 4.11735 4.20396 4.25572 4.26326 4.43466 4.62372 4.69027 4.76578 4.77471 4.85983 4.91144 4.96998 5.00043 5.02819 5.06161 5.08528 5.16499 5.54432 5.61420 5.80847 5.90130 6.39554 6.44017 6.46811 7.11287 7.12131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.084 4.084 3 Si 0.744 3.256 4 C -0.126 4.126 5 C -0.020 4.020 6 C -0.155 4.155 7 C 0.565 3.435 8 O -0.574 6.574 9 N -0.693 5.693 10 C 0.114 3.886 11 H 0.088 0.912 12 C -0.116 4.116 13 C -0.105 4.105 14 H 0.129 0.871 15 C 0.111 3.889 16 N -0.702 5.702 17 C 0.703 3.297 18 O -0.588 6.588 19 N -0.678 5.678 20 C 0.530 3.470 21 O -0.495 6.495 22 C -0.155 4.155 23 C -0.035 4.035 24 C -0.153 4.153 25 C 0.113 3.887 26 F -0.132 7.132 27 H 0.397 0.603 28 H 0.099 0.901 29 H -0.270 1.270 30 H -0.291 1.291 31 H 0.142 0.858 32 H 0.417 0.583 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.169 0.831 36 H 0.452 0.548 37 H 0.436 0.564 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.179 0.821 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 -0.680 -5.343 5.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.192 4.192 3 Si 0.647 3.353 4 C -0.127 4.127 5 C -0.039 4.039 6 C -0.158 4.158 7 C 0.353 3.647 8 O -0.455 6.455 9 N -0.345 5.345 10 C 0.008 3.992 11 H 0.106 0.894 12 C -0.154 4.154 13 C -0.124 4.124 14 H 0.146 0.854 15 C 0.002 3.998 16 N -0.368 5.368 17 C 0.403 3.597 18 O -0.464 6.464 19 N -0.348 5.348 20 C 0.318 3.682 21 O -0.366 6.366 22 C -0.194 4.194 23 C -0.054 4.054 24 C -0.171 4.171 25 C 0.093 3.907 26 F -0.111 7.111 27 H 0.247 0.753 28 H 0.117 0.883 29 H -0.196 1.196 30 H -0.219 1.219 31 H 0.160 0.840 32 H 0.256 0.744 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.186 0.814 36 H 0.300 0.700 37 H 0.279 0.721 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.196 0.804 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.008 -0.419 -5.188 5.302 hybrid contribution -0.870 0.304 0.795 1.217 sum -1.878 -0.116 -4.394 4.779 Atomic orbital electron populations 1.86552 1.18070 1.80639 1.51269 1.24838 0.84413 1.11884 0.98080 0.94658 0.90424 0.73227 0.76966 1.19289 1.04134 0.95917 0.93393 1.21020 0.92261 0.91138 0.99514 1.19951 1.05731 0.95005 0.95162 1.18271 0.76930 0.85404 0.84081 1.90803 1.57675 1.68011 1.28968 1.45423 1.61893 1.16855 1.10297 1.21838 0.93499 0.83079 1.00768 0.89352 1.23342 0.96107 1.01223 0.94709 1.22963 0.95172 0.99155 0.95147 0.85358 1.22140 0.92992 0.88107 0.96530 1.45577 1.05986 1.34720 1.50566 1.16056 0.83718 0.80450 0.79521 1.91075 1.67659 1.44770 1.42945 1.44367 1.13928 1.31227 1.45305 1.21186 0.88247 0.81497 0.77316 1.90870 1.83965 1.25644 1.36142 1.23556 0.96805 1.02860 0.96132 1.21527 0.93696 0.93095 0.97056 1.21422 1.01057 0.96231 0.98405 1.18261 0.96727 0.80526 0.95178 1.91537 1.84720 1.38427 1.96420 0.75256 0.88328 1.19571 1.21850 0.83991 0.74379 0.86658 0.87773 0.81441 0.70031 0.72117 0.92040 0.88981 0.80384 0.81197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.14 12.86 -148.98 -1.92 -4.05 16 2 C -0.08 -0.09 2.79 71.24 0.20 0.11 16 3 Si 0.74 0.39 30.77 68.60 2.11 2.50 16 4 C -0.13 -0.29 4.80 -19.86 -0.10 -0.38 16 5 C -0.02 -0.03 9.21 22.52 0.21 0.17 16 6 C -0.16 0.21 5.87 -20.09 -0.12 0.10 16 7 C 0.56 0.42 7.77 86.75 0.67 1.09 16 8 O -0.57 -5.67 15.94 -3.91 -0.06 -5.73 16 9 N -0.69 5.05 5.21 -443.01 -2.31 2.74 16 10 C 0.11 -0.86 4.32 45.52 0.20 -0.66 16 11 H 0.09 -0.20 7.47 -2.39 -0.02 -0.22 16 12 C -0.12 1.75 7.31 31.12 0.23 1.98 16 13 C -0.11 1.39 3.52 -10.27 -0.04 1.35 16 14 H 0.13 -1.88 8.14 -2.39 -0.02 -1.90 16 15 C 0.11 -1.33 3.69 44.38 0.16 -1.17 16 16 N -0.70 6.68 4.52 -459.10 -2.08 4.60 16 17 C 0.70 -0.68 8.87 179.33 1.59 0.91 16 18 O -0.59 -5.28 18.04 -3.84 -0.07 -5.35 16 19 N -0.68 2.45 5.70 -440.85 -2.51 -0.06 16 20 C 0.53 -2.44 8.13 87.94 0.71 -1.72 16 21 O -0.50 -0.99 18.02 -2.87 -0.05 -1.04 16 22 C -0.15 1.15 7.26 31.12 0.23 1.38 16 23 C -0.04 0.26 9.54 22.52 0.21 0.47 16 24 C -0.15 0.67 10.01 22.27 0.22 0.89 16 25 C 0.11 0.23 6.67 22.47 0.15 0.38 16 26 F -0.13 -0.84 12.83 44.97 0.58 -0.26 16 27 H 0.40 -1.61 8.74 -74.06 -0.65 -2.26 16 28 H 0.10 -0.28 7.77 -2.38 -0.02 -0.30 16 29 H -0.27 -1.97 5.33 99.48 0.53 -1.44 16 30 H -0.29 -1.36 7.11 99.48 0.71 -0.65 16 31 H 0.14 0.35 7.59 -2.91 -0.02 0.33 16 32 H 0.42 -5.92 6.73 -92.71 -0.62 -6.54 16 33 H 0.12 -2.03 7.51 -2.39 -0.02 -2.04 16 34 H 0.10 -1.83 8.14 -2.39 -0.02 -1.85 16 35 H 0.17 -2.95 8.14 -2.39 -0.02 -2.97 16 36 H 0.45 -5.96 8.50 -92.71 -0.79 -6.75 16 37 H 0.44 -2.16 8.96 -92.71 -0.83 -2.99 16 38 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.09 -0.53 6.73 -2.39 -0.02 -0.55 16 40 H 0.18 -2.87 6.40 -2.91 -0.02 -2.89 16 41 H 0.17 -1.56 8.06 -2.91 -0.02 -1.59 16 Total: 0.00 -32.94 353.13 -3.64 -36.58 By element: Atomic # 1 Polarization: -32.98 SS G_CDS: -1.87 Total: -34.85 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.54 Total: 4.92 kcal Atomic # 7 Polarization: 14.18 SS G_CDS: -6.90 Total: 7.28 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -2.10 Total: -16.17 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.58 Total: -0.26 kcal Atomic # 14 Polarization: 0.39 SS G_CDS: 2.11 Total: 2.50 kcal Total: -32.94 -3.64 -36.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.530 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds