Wall clock time and date at job start Sun Mar 7 2021 08:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37861 * 126.45602 * 2 1 4 4 C 1.46675 * 126.23673 * 359.97438 * 3 2 1 5 5 O 1.21694 * 119.99836 * 359.71844 * 4 3 2 6 6 N 1.34783 * 120.00302 * 179.71632 * 4 3 2 7 7 C 1.46493 * 119.99970 * 180.02562 * 6 4 3 8 8 H 1.09007 * 112.85027 * 336.19220 * 7 6 4 9 9 C 1.53955 * 113.54317 * 107.50562 * 7 6 4 10 10 C 1.53774 * 87.01953 * 89.18466 * 9 7 6 11 11 H 1.08999 * 113.61737 * 270.77686 * 10 9 7 12 12 C 1.53006 * 113.61366 * 139.95712 * 10 9 7 13 13 N 1.47312 * 110.59849 * 197.33516 * 12 10 9 14 14 C 1.34867 * 106.43429 * 241.51807 * 13 12 10 15 15 O 1.21542 * 123.72273 * 179.97438 * 14 13 12 16 16 N 1.33792 * 112.50456 * 359.86512 * 14 13 12 17 17 C 1.34770 * 111.64198 * 0.08502 * 16 14 13 18 18 O 1.21233 * 127.15604 * 180.02562 * 17 16 14 19 19 C 1.53784 * 87.17523 * 25.36545 * 10 9 7 20 20 N 1.37659 * 107.53292 * 179.73791 * 3 2 1 21 21 C 1.35535 * 108.64095 * 0.25866 * 20 3 2 22 22 C 1.50701 * 125.55868 * 179.97438 * 21 20 3 23 23 O 1.42898 * 109.47193 * 300.00030 * 22 21 20 24 24 Si 1.86305 * 109.46670 * 180.02562 * 22 21 20 25 25 C 1.35450 * 108.87107 * 0.02562 * 21 20 3 26 26 H 1.08998 * 109.46606 * 90.00648 * 1 2 3 27 27 H 1.08997 * 109.47209 * 210.00078 * 1 2 3 28 28 H 1.08996 * 109.47301 * 330.00446 * 1 2 3 29 29 H 0.97001 * 119.99892 * 359.97438 * 6 4 3 30 30 H 1.09004 * 113.66349 * 334.65866 * 9 7 6 31 31 H 1.08994 * 113.61609 * 203.71177 * 9 7 6 32 32 H 1.08998 * 110.53322 * 320.15778 * 12 10 9 33 33 H 0.96995 * 126.69242 * 61.44078 * 13 12 10 34 34 H 0.96995 * 124.18131 * 180.12167 * 16 14 13 35 35 H 1.08999 * 113.61146 * 89.15291 * 19 10 9 36 36 H 1.08997 * 113.61172 * 219.97756 * 19 10 9 37 37 H 0.97000 * 125.68067 * 180.24150 * 20 3 2 38 38 H 1.09000 * 109.46754 * 60.00727 * 22 21 20 39 39 H 0.96693 * 113.99965 * 300.00304 * 23 22 21 40 40 H 1.48502 * 110.00084 * 58.68059 * 24 22 21 41 41 H 1.48503 * 109.99790 * 179.97438 * 24 22 21 42 42 H 1.08005 * 126.06228 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3263 1.1088 0.0000 4 6 1.8899 2.5092 -0.0005 5 8 0.7027 2.7765 -0.0062 6 7 2.8038 3.4999 0.0053 7 6 2.3679 4.8985 0.0054 8 1 1.3664 5.0297 -0.4047 9 6 2.5838 5.6098 1.3535 10 6 3.9812 5.9910 0.8373 11 1 4.7477 5.2499 1.0642 12 6 4.4036 7.4146 1.2060 13 7 5.5265 7.8572 0.3614 14 6 6.5584 8.1000 1.1952 15 8 7.6501 8.4840 0.8237 16 7 6.2460 7.8734 2.4762 17 6 4.9719 7.4554 2.6107 18 8 4.3992 7.1716 3.6408 19 6 3.4066 5.8675 -0.5838 20 7 3.6284 0.6624 0.0060 21 6 3.6218 -0.6929 0.0039 22 6 4.8434 -1.5753 0.0082 23 8 5.6295 -1.3063 -1.1544 24 14 4.3183 -3.3628 0.0022 25 6 2.3380 -1.1247 -0.0040 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 3.7501 3.2868 0.0102 30 1 2.6035 4.9326 2.2074 31 1 1.9262 6.4656 1.5059 32 1 3.5608 8.0996 1.1132 33 1 5.5230 7.9533 -0.6037 34 1 6.8605 7.9954 3.2168 35 1 2.9743 6.7939 -0.9620 36 1 4.0901 5.3992 -1.2920 37 1 4.4191 1.2243 0.0107 38 1 5.4345 -1.3730 0.9014 39 1 5.1658 -1.4650 -1.9880 40 1 3.4850 -3.6434 -1.1946 41 1 5.5140 -4.2435 0.0058 42 1 2.0137 -2.1549 -0.0070 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17522896_13940406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:20:08 Heat of formation + Delta-G solvation = -37.999689 kcal Electronic energy + Delta-G solvation = -28641.578455 eV Core-core repulsion = 24397.643837 eV Total energy + Delta-G solvation = -4243.934619 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.56610 -42.65288 -41.11074 -39.76746 -39.26106 -37.94987 -37.22850 -35.26193 -34.33356 -33.38328 -31.71124 -29.70485 -28.18581 -27.13948 -27.00467 -25.22796 -23.86750 -23.01045 -22.69862 -21.68790 -20.74551 -20.48360 -19.64237 -19.47685 -18.29173 -18.07550 -17.83980 -17.36882 -17.00215 -16.82621 -16.59142 -16.48195 -16.10878 -15.99637 -15.75616 -15.38822 -15.22890 -15.07958 -14.74937 -14.48276 -14.24679 -13.89119 -13.80135 -13.62037 -13.59154 -13.51876 -12.96563 -12.86989 -12.39298 -12.28970 -11.96636 -11.91830 -11.78090 -11.53068 -11.29656 -11.14924 -10.88791 -10.69553 -10.31100 -9.86865 -9.21881 -5.01422 0.29936 0.40947 1.06796 1.22529 1.50187 1.56383 1.77943 1.84490 1.86277 1.91738 2.09955 2.27683 2.63601 3.04043 3.13915 3.26616 3.31368 3.45209 3.46900 3.64940 3.71653 3.96242 4.10835 4.13268 4.16117 4.33247 4.33655 4.38451 4.54362 4.59079 4.70651 4.77595 4.80452 4.82033 4.86800 4.99329 5.18131 5.27926 5.41618 5.55357 5.59509 5.72341 5.85782 6.14297 6.19007 6.19984 6.33780 6.96769 7.05007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.061 4.061 3 C -0.058 4.058 4 C 0.595 3.405 5 O -0.517 6.517 6 N -0.718 5.718 7 C 0.124 3.876 8 H 0.114 0.886 9 C -0.137 4.137 10 C -0.115 4.115 11 H 0.099 0.901 12 C 0.102 3.898 13 N -0.721 5.721 14 C 0.703 3.297 15 O -0.539 6.539 16 N -0.681 5.681 17 C 0.527 3.473 18 O -0.457 6.457 19 C -0.137 4.137 20 N -0.525 5.525 21 C 0.029 3.971 22 C -0.062 4.062 23 O -0.535 6.535 24 Si 0.717 3.283 25 C -0.200 4.200 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.394 0.606 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.442 0.558 34 H 0.435 0.565 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.416 0.584 38 H 0.120 0.880 39 H 0.380 0.620 40 H -0.254 1.254 41 H -0.255 1.255 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.979 -1.401 -0.811 1.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.069 4.069 3 C -0.171 4.171 4 C 0.383 3.617 5 O -0.392 6.392 6 N -0.369 5.369 7 C 0.019 3.981 8 H 0.132 0.868 9 C -0.176 4.176 10 C -0.135 4.135 11 H 0.117 0.883 12 C -0.007 4.007 13 N -0.387 5.387 14 C 0.402 3.598 15 O -0.412 6.412 16 N -0.352 5.352 17 C 0.312 3.688 18 O -0.325 6.325 19 C -0.175 4.175 20 N -0.122 5.122 21 C -0.089 4.089 22 C -0.171 4.171 23 O -0.341 6.341 24 Si 0.616 3.384 25 C -0.224 4.224 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.228 0.772 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.150 0.850 33 H 0.287 0.713 34 H 0.277 0.723 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.253 0.747 38 H 0.138 0.862 39 H 0.228 0.772 40 H -0.178 1.178 41 H -0.180 1.180 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.063 -1.623 -0.482 1.999 hybrid contribution 1.587 0.944 -1.056 2.127 sum 0.524 -0.679 -1.538 1.761 Atomic orbital electron populations 1.20405 0.88768 1.03375 1.02552 1.19950 0.96080 0.90292 1.00628 1.20183 0.83569 0.93399 1.19942 1.17005 0.85800 0.82904 0.75972 1.90850 1.15811 1.83059 1.49467 1.45558 1.09186 1.05597 1.76556 1.21838 0.99868 0.79644 0.96799 0.86820 1.23490 0.94467 1.01428 0.98250 1.22873 0.98615 0.93587 0.98403 0.88321 1.22178 0.92073 0.98834 0.87651 1.45601 1.11573 1.71573 1.09939 1.15964 0.84577 0.78194 0.81068 1.91102 1.22027 1.50102 1.77965 1.44362 1.16115 1.64265 1.10476 1.20792 0.81630 0.75158 0.91248 1.90891 1.64185 1.44649 1.32794 1.23373 0.98182 1.00580 0.95357 1.41846 1.07088 1.06588 1.56647 1.21051 0.96836 0.83260 1.07734 1.24920 0.91642 1.09175 0.91365 1.86594 1.42000 1.89515 1.15983 0.94234 0.82215 0.72398 0.89579 1.20620 0.90804 0.99181 1.11812 0.91254 0.91456 0.89966 0.77246 0.89953 0.87952 0.84973 0.71265 0.72272 0.87690 0.90075 0.74697 0.86185 0.77154 1.17842 1.17996 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.10 9.83 36.01 0.35 0.25 16 2 C -0.06 -0.09 6.21 -104.16 -0.65 -0.73 16 3 C -0.06 -0.05 7.06 -81.98 -0.58 -0.63 16 4 C 0.59 0.75 7.79 -12.85 -0.10 0.65 16 5 O -0.52 -2.31 14.40 5.19 0.07 -2.24 16 6 N -0.72 1.57 5.26 -54.23 -0.29 1.29 16 7 C 0.12 -0.37 4.33 -67.03 -0.29 -0.66 16 8 H 0.11 -0.16 7.46 -51.92 -0.39 -0.55 16 9 C -0.14 0.45 7.45 -25.83 -0.19 0.26 16 10 C -0.12 0.54 3.26 -89.81 -0.29 0.25 16 11 H 0.10 -0.43 8.14 -51.93 -0.42 -0.86 16 12 C 0.10 -0.43 3.38 -68.20 -0.23 -0.66 16 13 N -0.72 2.66 6.17 -59.10 -0.36 2.29 16 14 C 0.70 -0.12 9.00 -87.71 -0.79 -0.91 16 15 O -0.54 -2.27 18.04 5.33 0.10 -2.18 16 16 N -0.68 1.06 5.70 -15.71 -0.09 0.97 16 17 C 0.53 -0.70 8.14 -10.56 -0.09 -0.79 16 18 O -0.46 -0.85 18.02 5.60 0.10 -0.75 16 19 C -0.14 0.76 7.29 -25.91 -0.19 0.57 16 20 N -0.53 0.74 5.99 -5.70 -0.03 0.70 16 21 C 0.03 -0.03 6.47 -81.95 -0.53 -0.56 16 22 C -0.06 0.12 3.08 36.01 0.11 0.24 16 23 O -0.53 0.43 12.88 -35.23 -0.45 -0.03 16 24 Si 0.72 -1.71 30.54 -169.99 -5.19 -6.90 16 25 C -0.20 0.04 9.27 -39.98 -0.37 -0.33 16 26 H 0.07 0.07 8.14 -51.93 -0.42 -0.36 16 27 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.08 0.21 6.49 -51.93 -0.34 -0.12 16 29 H 0.39 -1.73 7.83 -40.82 -0.32 -2.05 16 30 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 31 H 0.10 -0.41 8.03 -51.93 -0.42 -0.83 16 32 H 0.13 -0.79 8.04 -51.93 -0.42 -1.21 16 33 H 0.44 -2.38 8.96 -40.82 -0.37 -2.75 16 34 H 0.43 -1.16 8.96 -40.82 -0.37 -1.53 16 35 H 0.10 -0.71 8.10 -51.93 -0.42 -1.13 16 36 H 0.08 -0.46 8.14 -51.93 -0.42 -0.88 16 37 H 0.42 -1.53 8.19 -40.82 -0.33 -1.87 16 38 H 0.12 -0.35 7.96 -51.93 -0.41 -0.77 16 39 H 0.38 -1.21 8.70 45.56 0.40 -0.81 16 40 H -0.25 0.06 7.11 56.52 0.40 0.46 16 41 H -0.26 -0.21 7.11 56.52 0.40 0.19 16 42 H 0.15 -0.30 6.17 -52.48 -0.32 -0.63 16 LS Contribution 359.38 15.07 5.42 5.42 Total: 0.00 -11.57 359.38 -9.58 -21.15 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: -5.02 Total: -16.67 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.83 Total: -3.05 kcal Atomic # 7 Polarization: 6.02 SS G_CDS: -0.77 Total: 5.25 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.18 Total: -5.19 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -5.19 Total: -6.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -11.57 -9.58 -21.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_13940406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.848 kcal (2) G-P(sol) polarization free energy of solvation -11.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds