Wall clock time and date at job start Sun Mar 7 2021 08:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47508 * 2 1 4 4 C 1.50702 * 109.47032 * 120.00162 * 2 1 3 5 5 C 1.34848 * 125.89007 * 244.95402 * 4 2 1 6 6 C 1.40889 * 107.41937 * 179.80359 * 5 4 2 7 7 C 1.34847 * 107.41625 * 0.38444 * 6 5 4 8 8 C 1.50701 * 125.89382 * 179.88570 * 7 6 5 9 9 C 1.50703 * 109.47262 * 274.68655 * 8 7 6 10 10 O 1.21286 * 119.99513 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00205 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00014 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.85074 * 336.20143 * 12 11 9 14 14 C 1.53782 * 113.61142 * 107.50467 * 12 11 9 15 15 C 1.53962 * 87.11063 * 89.18830 * 14 12 11 16 16 H 1.08993 * 113.61598 * 270.84305 * 15 14 12 17 17 C 1.52999 * 113.66529 * 139.88900 * 15 14 12 18 18 N 1.47307 * 110.60026 * 82.54966 * 17 15 14 19 19 C 1.34536 * 106.61798 * 118.52332 * 18 17 15 20 20 O 1.21534 * 123.77028 * 179.97438 * 19 18 17 21 21 N 1.33788 * 112.45503 * 0.02562 * 19 18 17 22 22 C 1.34763 * 111.64881 * 359.97438 * 21 19 18 23 23 O 1.21233 * 127.16172 * 180.02562 * 22 21 19 24 24 C 1.53781 * 113.61619 * 205.00312 * 12 11 9 25 25 N 1.36340 * 125.89459 * 64.99731 * 4 2 1 26 26 H 0.96704 * 113.99361 * 300.00057 * 1 2 3 27 27 H 1.09000 * 109.46869 * 239.99610 * 2 1 3 28 28 H 1.48502 * 110.00081 * 178.68256 * 3 2 1 29 29 H 1.48496 * 109.99668 * 300.00309 * 3 2 1 30 30 H 1.08001 * 126.29261 * 0.02562 * 5 4 2 31 31 H 1.08005 * 126.29708 * 180.23488 * 6 5 4 32 32 H 1.08999 * 109.47362 * 154.68464 * 8 7 6 33 33 H 1.09003 * 109.47088 * 34.68486 * 8 7 6 34 34 H 0.97001 * 120.00013 * 0.02562 * 11 9 8 35 35 H 1.08997 * 113.61668 * 203.66381 * 14 12 11 36 36 H 1.08998 * 113.61674 * 334.48890 * 14 12 11 37 37 H 1.09007 * 110.53881 * 319.72104 * 17 15 14 38 38 H 0.96996 * 126.69432 * 298.56846 * 18 17 15 39 39 H 0.97007 * 124.17438 * 179.97438 * 21 19 18 40 40 H 1.09002 * 113.61445 * 25.43587 * 24 12 11 41 41 H 1.09002 * 113.61408 * 156.25317 * 24 12 11 42 42 H 0.97004 * 125.63204 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.6308 -0.1489 2.2373 6 6 2.8942 -1.1596 3.1829 7 6 2.3529 -2.3021 2.7138 8 6 2.3932 -3.6446 3.3973 9 6 3.6798 -4.3476 3.0485 10 8 4.4849 -3.8109 2.3172 11 7 3.9361 -5.5720 3.5499 12 6 5.1866 -6.2555 3.2102 13 1 5.6192 -5.9056 2.2729 14 6 6.1927 -6.3121 4.3719 15 6 5.5222 -7.6349 4.7854 16 1 4.6837 -7.5043 5.4694 17 6 6.5110 -8.7048 5.2528 18 7 6.8701 -8.4966 6.6662 19 6 6.4684 -9.5950 7.3311 20 8 6.6142 -9.7516 8.5275 21 7 5.8915 -10.4961 6.5279 22 6 5.8581 -10.0729 5.2489 23 8 5.4009 -10.6633 4.2939 24 6 5.0994 -7.7873 3.3147 25 7 1.7576 -2.0320 1.5174 26 1 -0.3932 0.4417 0.7651 27 1 1.7923 -0.5139 -0.8900 28 1 3.5347 1.7702 0.0321 29 1 1.5615 2.4678 -1.2084 30 1 2.9307 0.8862 2.3078 31 1 3.4328 -1.0417 4.1116 32 1 1.5481 -4.2473 3.0646 33 1 2.3369 -3.5046 4.4768 34 1 3.2923 -6.0010 4.1350 35 1 7.2268 -6.4309 4.0485 36 1 6.0660 -5.5099 5.0988 37 1 7.4028 -8.7014 4.6260 38 1 7.3099 -7.7190 7.0440 39 1 5.5406 -11.3489 6.8291 40 1 4.0892 -8.1767 3.1888 41 1 5.8337 -8.3092 2.7011 42 1 1.2882 -2.6739 0.9619 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:20:10 Heat of formation + Delta-G solvation = -44.981998 kcal Electronic energy + Delta-G solvation = -27931.924452 eV Core-core repulsion = 23687.687057 eV Total energy + Delta-G solvation = -4244.237394 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.44675 -42.32263 -41.08668 -39.80554 -39.22149 -37.68270 -37.23780 -35.02442 -34.08653 -32.89862 -31.91163 -29.80883 -28.96767 -26.73753 -25.57571 -24.76780 -23.70525 -22.58067 -22.19870 -21.34276 -21.00240 -20.42530 -19.43728 -18.90062 -18.26100 -17.92266 -17.61898 -17.27484 -17.03323 -16.64492 -16.48341 -16.28679 -16.24481 -15.85776 -15.57309 -15.26133 -15.17371 -14.96158 -14.54121 -14.34814 -14.09163 -13.99062 -13.83013 -13.70633 -13.39871 -13.30107 -12.75285 -12.57271 -12.30918 -12.10744 -11.99314 -11.74517 -11.62485 -11.50875 -11.07966 -10.99153 -10.63145 -10.49177 -10.05985 -9.78441 -8.95152 -4.96226 0.52217 1.12313 1.27062 1.40272 1.61082 1.70115 1.87591 1.92413 1.95448 2.15573 2.29245 2.52683 2.83152 3.38769 3.52098 3.59312 3.66004 3.69436 3.80778 3.86928 3.88604 4.05022 4.22529 4.31932 4.38451 4.38501 4.50289 4.63131 4.68830 4.79616 4.81236 4.88094 4.97194 5.03170 5.05895 5.16746 5.27053 5.30642 5.60821 5.78596 5.86901 6.01607 6.15051 6.36632 6.51897 6.67408 6.71509 7.09100 7.26500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.053 4.053 3 Si 0.810 3.190 4 C -0.023 4.023 5 C -0.201 4.201 6 C -0.200 4.200 7 C 0.033 3.967 8 C -0.068 4.068 9 C 0.514 3.486 10 O -0.576 6.576 11 N -0.702 5.702 12 C 0.111 3.889 13 H 0.083 0.917 14 C -0.131 4.131 15 C -0.103 4.103 16 H 0.110 0.890 17 C 0.109 3.891 18 N -0.702 5.702 19 C 0.703 3.297 20 O -0.588 6.588 21 N -0.677 5.677 22 C 0.530 3.470 23 O -0.488 6.488 24 C -0.125 4.125 25 N -0.538 5.538 26 H 0.397 0.603 27 H 0.099 0.901 28 H -0.295 1.295 29 H -0.293 1.293 30 H 0.153 0.847 31 H 0.142 0.858 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.417 0.583 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.157 0.843 38 H 0.452 0.548 39 H 0.437 0.563 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 0.531 2.735 3.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.162 4.162 3 Si 0.714 3.286 4 C -0.136 4.136 5 C -0.226 4.226 6 C -0.224 4.224 7 C -0.081 4.081 8 C -0.108 4.108 9 C 0.301 3.699 10 O -0.454 6.454 11 N -0.354 5.354 12 C 0.006 3.994 13 H 0.102 0.898 14 C -0.170 4.170 15 C -0.123 4.123 16 H 0.128 0.872 17 C 0.000 4.000 18 N -0.367 5.367 19 C 0.402 3.598 20 O -0.465 6.465 21 N -0.347 5.347 22 C 0.317 3.683 23 O -0.358 6.358 24 C -0.164 4.164 25 N -0.134 5.134 26 H 0.248 0.752 27 H 0.117 0.883 28 H -0.222 1.222 29 H -0.221 1.221 30 H 0.171 0.829 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.254 0.746 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.174 0.826 38 H 0.299 0.701 39 H 0.280 0.720 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -1.436 0.749 1.212 2.023 hybrid contribution -0.189 -1.419 0.065 1.433 sum -1.625 -0.669 1.277 2.173 Atomic orbital electron populations 1.86444 1.17195 1.82249 1.50697 1.24910 0.85152 1.11251 0.94928 0.93078 0.77295 0.74038 0.84158 1.20972 1.07663 0.84959 1.00023 1.20925 1.05547 1.00418 0.95674 1.20859 1.06749 0.92572 1.02233 1.19929 1.03078 0.96422 0.88694 1.20255 0.95858 0.90761 1.03895 1.21004 0.88486 0.81311 0.79101 1.90764 1.50116 1.66346 1.38195 1.45571 1.21350 1.17510 1.50993 1.21824 0.85622 0.92979 0.99019 0.89848 1.23484 0.99833 0.95950 0.97706 1.22857 0.98012 0.93923 0.97488 0.87179 1.22309 1.00976 0.91951 0.84728 1.45492 1.63226 1.20007 1.07971 1.15991 0.77969 0.81499 0.84366 1.91072 1.61908 1.79931 1.13579 1.44347 1.57424 1.22437 1.10539 1.21086 0.77275 0.88177 0.81797 1.90874 1.44509 1.62829 1.37571 1.23287 1.03868 0.94189 0.95056 1.41905 1.44241 1.09191 1.18035 0.75241 0.88305 1.22194 1.22094 0.82939 0.83973 0.85539 0.83714 0.74620 0.87259 0.90312 0.82596 0.70136 0.71962 0.90204 0.87458 0.74494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.28 12.88 -148.98 -1.92 -2.20 16 2 C -0.05 -0.07 3.08 71.24 0.22 0.15 16 3 Si 0.81 -0.41 30.60 68.60 2.10 1.69 16 4 C -0.02 -0.07 6.50 41.08 0.27 0.20 16 5 C -0.20 -0.71 9.37 22.14 0.21 -0.50 16 6 C -0.20 -0.74 10.76 22.14 0.24 -0.50 16 7 C 0.03 0.04 5.66 41.08 0.23 0.27 16 8 C -0.07 0.43 6.24 29.10 0.18 0.62 16 9 C 0.51 -0.52 7.82 87.66 0.69 0.17 16 10 O -0.58 -5.79 15.63 -3.05 -0.05 -5.84 16 11 N -0.70 5.18 5.26 -440.03 -2.32 2.86 16 12 C 0.11 -0.71 4.32 45.52 0.20 -0.51 16 13 H 0.08 -0.05 7.47 -2.38 -0.02 -0.07 16 14 C -0.13 1.37 7.45 31.18 0.23 1.60 16 15 C -0.10 1.20 3.37 -10.20 -0.03 1.16 16 16 H 0.11 -1.36 8.14 -2.39 -0.02 -1.38 16 17 C 0.11 -1.13 3.44 44.37 0.15 -0.97 16 18 N -0.70 5.93 6.24 -459.60 -2.87 3.06 16 19 C 0.70 -0.59 8.99 179.44 1.61 1.02 16 20 O -0.59 -5.19 18.04 -3.82 -0.07 -5.26 16 21 N -0.68 2.65 5.70 -441.13 -2.52 0.14 16 22 C 0.53 -2.34 8.00 87.94 0.70 -1.64 16 23 O -0.49 -0.80 17.48 -2.88 -0.05 -0.85 16 24 C -0.13 1.15 6.64 31.12 0.21 1.36 16 25 N -0.54 -1.01 6.07 -171.12 -1.04 -2.05 16 26 H 0.40 -2.92 8.70 -74.05 -0.64 -3.57 16 27 H 0.10 0.30 7.96 -2.39 -0.02 0.28 16 28 H -0.29 -1.79 7.11 99.48 0.71 -1.08 16 29 H -0.29 -1.65 7.11 99.48 0.71 -0.94 16 30 H 0.15 -0.03 6.24 -2.91 -0.02 -0.05 16 31 H 0.14 0.18 8.06 -2.91 -0.02 0.16 16 32 H 0.13 -1.47 8.14 -2.39 -0.02 -1.49 16 33 H 0.15 -1.71 8.14 -2.39 -0.02 -1.73 16 34 H 0.42 -5.57 8.70 -92.71 -0.81 -6.38 16 35 H 0.11 -1.34 8.03 -2.39 -0.02 -1.36 16 36 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.16 -2.24 8.05 -2.38 -0.02 -2.26 16 38 H 0.45 -5.27 8.96 -92.71 -0.83 -6.10 16 39 H 0.44 -2.46 8.96 -92.70 -0.83 -3.29 16 40 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.11 -0.97 8.10 -2.39 -0.02 -0.99 16 42 H 0.42 -0.55 8.96 -92.71 -0.83 -1.38 16 Total: 0.00 -32.69 362.71 -6.39 -39.08 By element: Atomic # 1 Polarization: -30.29 SS G_CDS: -2.76 Total: -33.05 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.10 Total: 2.41 kcal Atomic # 7 Polarization: 12.76 SS G_CDS: -8.74 Total: 4.02 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -2.09 Total: -14.15 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: 2.10 Total: 1.69 kcal Total: -32.69 -6.39 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.901 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds