Wall clock time and date at job start Sun Mar 7 2021 08:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42889 * 1 3 3 Si 1.86307 * 109.47330 * 2 1 4 4 C 1.50701 * 109.47044 * 119.99785 * 2 1 3 5 5 C 1.38268 * 119.94550 * 65.00340 * 4 2 1 6 6 C 1.38138 * 120.05615 * 180.02562 * 5 4 2 7 7 C 1.38734 * 119.94757 * 359.97438 * 6 5 4 8 8 O 1.35899 * 120.06191 * 180.02562 * 7 6 5 9 9 C 1.42895 * 117.00337 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47102 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.46978 * 179.97438 * 10 9 8 12 12 O 1.21276 * 120.00495 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00151 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00378 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.84635 * 336.19873 * 14 13 11 16 16 C 1.53782 * 113.68888 * 107.46446 * 14 13 11 17 17 C 1.53774 * 87.08337 * 89.12756 * 16 14 13 18 18 H 1.09005 * 113.69485 * 270.87335 * 17 16 14 19 19 C 1.52998 * 113.61698 * 139.97613 * 17 16 14 20 20 N 1.47319 * 110.59475 * 87.50551 * 19 17 16 21 21 C 1.34526 * 106.61635 * 241.47348 * 20 19 17 22 22 O 1.21543 * 123.76817 * 180.02562 * 21 20 19 23 23 N 1.33787 * 112.45950 * 0.26762 * 21 20 19 24 24 C 1.34769 * 111.64565 * 359.53813 * 23 21 20 25 25 O 1.21233 * 127.15754 * 180.14345 * 24 23 21 26 26 C 1.53780 * 113.61469 * 204.99841 * 14 13 11 27 27 C 1.38737 * 119.88783 * 0.28042 * 7 6 5 28 28 C 1.38151 * 119.94059 * 359.46853 * 27 7 6 29 29 H 0.96706 * 113.99997 * 60.00222 * 1 2 3 30 30 H 1.08995 * 109.47449 * 239.99462 * 2 1 3 31 31 H 1.48493 * 109.99863 * 59.99689 * 3 2 1 32 32 H 1.48499 * 109.99839 * 181.31882 * 3 2 1 33 33 H 1.07999 * 119.97033 * 359.97438 * 5 4 2 34 34 H 1.08003 * 120.03214 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.47650 * 59.99961 * 9 8 7 36 36 H 1.09004 * 109.47193 * 299.99928 * 9 8 7 37 37 H 1.08995 * 109.47274 * 59.99272 * 10 9 8 38 38 H 1.09004 * 109.46664 * 299.99794 * 10 9 8 39 39 H 0.97004 * 119.99490 * 359.97438 * 13 11 10 40 40 H 1.09000 * 113.61682 * 334.57877 * 16 14 13 41 41 H 1.09006 * 113.61349 * 203.67733 * 16 14 13 42 42 H 1.08993 * 110.65908 * 210.41696 * 19 17 16 43 43 H 0.96998 * 126.68994 * 61.45715 * 20 19 17 44 44 H 0.97006 * 124.18214 * 179.69195 * 23 21 20 45 45 H 1.08999 * 113.61416 * 156.24879 * 26 14 13 46 46 H 1.09002 * 113.61233 * 25.35151 * 26 14 13 47 47 H 1.07993 * 120.03106 * 179.72101 * 27 7 6 48 48 H 1.07998 * 119.97239 * 180.23543 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.6839 -2.0605 1.3973 6 6 2.1429 -2.7138 2.5246 7 6 2.8529 -2.0143 3.4896 8 8 3.3059 -2.6548 4.5993 9 6 4.0289 -1.8715 5.5509 10 6 4.4552 -2.7581 6.7227 11 6 5.2182 -1.9321 7.7259 12 8 5.4033 -0.7507 7.5235 13 7 5.6951 -2.5062 8.8483 14 6 6.4373 -1.7033 9.8233 15 1 6.8915 -0.8158 9.3827 16 6 5.6517 -1.4171 11.1140 17 6 6.2371 -2.7270 11.6675 18 1 5.6300 -3.6053 11.4480 19 6 6.6480 -2.6412 13.1388 20 7 5.5072 -2.9600 14.0148 21 6 5.2730 -1.8622 14.7562 22 8 4.3917 -1.7853 15.5897 23 7 6.1152 -0.8629 14.4700 24 6 6.9965 -1.2143 13.5129 25 8 7.8805 -0.5295 13.0444 26 6 7.4062 -2.5261 10.6888 27 6 3.0951 -0.6585 3.3225 28 6 2.6385 -0.0108 2.1909 29 1 -0.3933 0.4417 -0.7651 30 1 1.7923 -0.5139 -0.8899 31 1 1.5614 2.4679 1.2084 32 1 3.5346 1.7702 -0.0321 33 1 1.1308 -2.6045 0.6460 34 1 1.9499 -3.7685 2.6543 35 1 3.3924 -1.0660 5.9171 36 1 4.9137 -1.4478 5.0756 37 1 5.0918 -3.5633 6.3562 38 1 3.5707 -3.1820 7.1981 39 1 5.5468 -3.4510 9.0104 40 1 4.5701 -1.4438 10.9819 41 1 5.9926 -0.5280 11.6445 42 1 7.4863 -3.3070 13.3433 43 1 5.0199 -3.7980 14.0499 44 1 6.0955 0.0064 14.8999 45 1 8.2267 -1.9402 11.1030 46 1 7.7410 -3.4481 10.2133 47 1 3.6437 -0.1108 4.0744 48 1 2.8301 1.0437 2.0584 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_4549602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:20:30 Heat of formation + Delta-G solvation = -95.449020 kcal Electronic energy + Delta-G solvation = -32822.788101 eV Core-core repulsion = 28039.342251 eV Total energy + Delta-G solvation = -4783.445849 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.61946 -41.57069 -41.18291 -40.04946 -39.34239 -38.98456 -37.30464 -37.24426 -35.09764 -34.22101 -33.32022 -32.18703 -31.60754 -29.42589 -26.89016 -26.74854 -25.86181 -25.00831 -23.81564 -23.74514 -22.65294 -22.19580 -21.64113 -20.20667 -19.70459 -19.44645 -18.37994 -18.34375 -17.96172 -17.73686 -17.56278 -17.35529 -17.04775 -16.93227 -16.77664 -16.59254 -16.16742 -15.91013 -15.69884 -15.55754 -15.49217 -15.19884 -14.94513 -14.77100 -14.56844 -14.37130 -14.20014 -13.99756 -13.70622 -13.56158 -13.24532 -13.01295 -12.90547 -12.72424 -12.50066 -12.38056 -12.03961 -11.97378 -11.82104 -11.69795 -11.64318 -11.53670 -11.26815 -11.12587 -10.48287 -10.30602 -10.19848 -10.17715 -9.34261 -4.99104 0.10335 0.15743 0.49013 1.28732 1.38807 1.43819 1.58706 1.59736 1.90259 1.94557 2.11812 2.37218 2.49021 2.87472 3.31399 3.32891 3.37501 3.49093 3.58503 3.62224 3.68691 3.71219 3.81945 3.88780 3.94226 4.03244 4.09765 4.21373 4.25785 4.32486 4.36794 4.42555 4.55277 4.58429 4.61483 4.67380 4.69233 4.74696 4.80238 4.86524 4.96036 4.97461 5.04377 5.10223 5.11850 5.35123 5.49474 5.57370 5.77024 5.85535 6.17698 6.33517 6.40692 6.92080 7.06988 7.11546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.069 4.069 3 Si 0.768 3.232 4 C -0.130 4.130 5 C -0.054 4.054 6 C -0.150 4.150 7 C 0.125 3.875 8 O -0.314 6.314 9 C 0.070 3.930 10 C -0.129 4.129 11 C 0.520 3.480 12 O -0.587 6.587 13 N -0.692 5.692 14 C 0.115 3.885 15 H 0.075 0.925 16 C -0.161 4.161 17 C -0.093 4.093 18 H 0.148 0.852 19 C 0.108 3.892 20 N -0.700 5.700 21 C 0.702 3.298 22 O -0.589 6.589 23 N -0.680 5.680 24 C 0.527 3.473 25 O -0.490 6.490 26 C -0.124 4.124 27 C -0.212 4.212 28 C -0.103 4.103 29 H 0.403 0.597 30 H 0.099 0.901 31 H -0.303 1.303 32 H -0.293 1.293 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.423 0.577 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.167 0.833 43 H 0.454 0.546 44 H 0.436 0.564 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.134 0.866 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 -8.143 -3.858 9.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.179 4.179 3 Si 0.676 3.324 4 C -0.130 4.130 5 C -0.072 4.072 6 C -0.169 4.169 7 C 0.079 3.921 8 O -0.228 6.228 9 C -0.006 4.006 10 C -0.168 4.168 11 C 0.308 3.692 12 O -0.467 6.467 13 N -0.345 5.345 14 C 0.009 3.991 15 H 0.093 0.907 16 C -0.200 4.200 17 C -0.112 4.112 18 H 0.166 0.834 19 C 0.000 4.000 20 N -0.366 5.366 21 C 0.401 3.599 22 O -0.466 6.466 23 N -0.351 5.351 24 C 0.314 3.686 25 O -0.361 6.361 26 C -0.162 4.162 27 C -0.231 4.231 28 C -0.121 4.121 29 H 0.255 0.745 30 H 0.116 0.884 31 H -0.231 1.231 32 H -0.220 1.220 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.184 0.816 43 H 0.302 0.698 44 H 0.278 0.722 45 H 0.118 0.882 46 H 0.129 0.871 47 H 0.151 0.849 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.922 -6.918 -2.844 7.723 hybrid contribution -0.057 0.278 0.984 1.024 sum 1.865 -6.640 -1.860 7.144 Atomic orbital electron populations 1.86443 1.17165 1.82314 1.51440 1.24653 0.85851 1.10202 0.97184 0.94605 0.77219 0.76068 0.84491 1.19647 1.01319 0.95214 0.96841 1.21105 0.96055 0.93173 0.96856 1.20799 1.00924 1.01792 0.93367 1.19138 0.94718 0.90761 0.87465 1.85954 1.69213 1.38419 1.29175 1.22473 0.95604 0.93825 0.88668 1.21427 1.03237 0.98989 0.93170 1.20712 0.78498 0.87466 0.82555 1.90758 1.59646 1.18487 1.77830 1.45433 1.55549 1.13961 1.19525 1.21699 0.93613 0.95641 0.88101 0.90656 1.23616 1.00947 0.97985 0.97431 1.22929 0.99138 0.99822 0.89330 0.83428 1.22295 0.91880 0.93516 0.92326 1.45482 1.35918 1.15606 1.39546 1.16008 0.80921 0.81653 0.81342 1.91070 1.35342 1.82679 1.37503 1.44406 1.32641 1.18164 1.39850 1.21177 0.79708 0.90254 0.77416 1.90878 1.30748 1.59813 1.54682 1.23360 0.96244 1.01862 0.94762 1.21318 1.06758 0.94592 1.00442 1.20829 0.98466 0.98736 0.94071 0.74539 0.88356 1.23124 1.22019 0.82741 0.82738 0.92269 0.91938 0.84803 0.85086 0.73817 0.91017 0.90982 0.81572 0.69824 0.72174 0.88204 0.87144 0.84857 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.28 12.81 -148.98 -1.91 -2.19 16 2 C -0.07 -0.04 2.79 71.24 0.20 0.16 16 3 Si 0.77 0.19 29.85 68.60 2.05 2.23 16 4 C -0.13 -0.84 5.39 -19.85 -0.11 -0.95 16 5 C -0.05 -0.23 9.68 22.25 0.22 -0.01 16 6 C -0.15 -0.67 9.99 22.36 0.22 -0.45 16 7 C 0.12 0.87 6.69 22.51 0.15 1.02 16 8 O -0.31 -1.38 10.14 -92.41 -0.94 -2.32 16 9 C 0.07 0.15 4.03 71.98 0.29 0.44 16 10 C -0.13 0.67 6.07 29.85 0.18 0.86 16 11 C 0.52 -0.10 7.83 87.65 0.69 0.59 16 12 O -0.59 -6.26 15.58 -3.02 -0.05 -6.31 16 13 N -0.69 4.82 5.27 -440.04 -2.32 2.51 16 14 C 0.12 -0.44 4.32 45.52 0.20 -0.24 16 15 H 0.08 0.28 7.46 -2.39 -0.02 0.26 16 16 C -0.16 0.68 7.10 31.12 0.22 0.90 16 17 C -0.09 1.12 3.84 -10.27 -0.04 1.08 16 18 H 0.15 -2.66 8.14 -2.38 -0.02 -2.68 16 19 C 0.11 -1.15 3.82 44.37 0.17 -0.98 16 20 N -0.70 6.07 6.24 -459.61 -2.87 3.20 16 21 C 0.70 0.23 8.99 179.44 1.61 1.84 16 22 O -0.59 -5.92 18.04 -3.85 -0.07 -5.99 16 23 N -0.68 1.36 5.70 -441.12 -2.52 -1.16 16 24 C 0.53 -1.50 6.00 87.94 0.53 -0.98 16 25 O -0.49 -1.61 16.29 -2.88 -0.05 -1.66 16 26 C -0.12 1.26 7.24 31.12 0.23 1.48 16 27 C -0.21 -1.81 9.04 22.37 0.20 -1.60 16 28 C -0.10 -0.93 8.66 22.26 0.19 -0.74 16 29 H 0.40 -4.13 8.74 -74.05 -0.65 -4.77 16 30 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 31 H -0.30 -2.59 7.05 99.48 0.70 -1.89 16 32 H -0.29 -1.80 7.11 99.48 0.71 -1.10 16 33 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 34 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 35 H 0.06 0.28 7.61 -2.39 -0.02 0.26 16 36 H 0.06 0.25 7.63 -2.38 -0.02 0.24 16 37 H 0.13 -1.33 8.14 -2.39 -0.02 -1.35 16 38 H 0.13 -1.24 8.14 -2.38 -0.02 -1.26 16 39 H 0.42 -6.33 8.70 -92.71 -0.81 -7.13 16 40 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.07 0.02 5.82 -2.38 -0.01 0.00 16 42 H 0.17 -2.69 8.14 -2.39 -0.02 -2.71 16 43 H 0.45 -5.98 8.96 -92.71 -0.83 -6.81 16 44 H 0.44 -1.42 8.96 -92.70 -0.83 -2.25 16 45 H 0.10 -0.67 6.90 -2.39 -0.02 -0.68 16 46 H 0.11 -1.62 8.14 -2.39 -0.02 -1.64 16 47 H 0.13 0.97 6.30 -2.91 -0.02 0.95 16 48 H 0.11 1.01 4.86 -2.91 -0.01 1.00 16 Total: 0.00 -36.04 400.42 -5.52 -41.56 By element: Atomic # 1 Polarization: -30.29 SS G_CDS: -2.01 Total: -32.30 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.15 Total: 2.42 kcal Atomic # 7 Polarization: 12.25 SS G_CDS: -7.70 Total: 4.55 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -3.01 Total: -18.46 kcal Atomic # 14 Polarization: 0.19 SS G_CDS: 2.05 Total: 2.23 kcal Total: -36.04 -5.52 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_4549602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.889 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds