Wall clock time and date at job start Sun Mar 7 2021 08:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.47168 * 2 1 4 4 C 1.50702 * 109.47216 * 239.99671 * 2 1 3 5 5 C 1.38242 * 119.97040 * 120.00181 * 4 2 1 6 6 C 1.38291 * 120.11162 * 179.97438 * 5 4 2 7 7 C 1.38125 * 120.05122 * 0.04902 * 6 5 4 8 8 C 1.38747 * 119.94622 * 359.97438 * 7 6 5 9 9 O 1.35900 * 120.05487 * 180.02562 * 8 7 6 10 10 C 1.42902 * 116.99924 * 359.97438 * 9 8 7 11 11 C 1.53003 * 109.46987 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47146 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47205 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99785 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99818 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00090 * 179.97438 * 15 13 12 17 17 H 1.09005 * 112.84689 * 336.20068 * 16 15 13 18 18 C 1.53785 * 113.61317 * 107.49953 * 16 15 13 19 19 C 1.53782 * 87.07636 * 89.12095 * 18 16 15 20 20 H 1.08999 * 113.68787 * 270.86813 * 19 18 16 21 21 C 1.53000 * 113.61285 * 139.98144 * 19 18 16 22 22 N 1.47316 * 110.59895 * 87.50114 * 21 19 18 23 23 C 1.34530 * 106.61941 * 241.47237 * 22 21 19 24 24 O 1.21539 * 123.77103 * 179.97438 * 23 22 21 25 25 N 1.33794 * 112.45342 * 359.97438 * 23 22 21 26 26 C 1.34760 * 111.64866 * 359.97438 * 25 23 22 27 27 O 1.21237 * 127.16264 * 180.02562 * 26 25 23 28 28 C 1.53775 * 113.61698 * 205.00075 * 16 15 13 29 29 C 1.38167 * 119.97190 * 300.30179 * 4 2 1 30 30 H 0.96702 * 113.99732 * 59.99735 * 1 2 3 31 31 H 1.09003 * 109.46660 * 119.99734 * 2 1 3 32 32 H 1.48495 * 110.00227 * 60.00187 * 3 2 1 33 33 H 1.48501 * 109.99839 * 181.31525 * 3 2 1 34 34 H 1.07997 * 119.94437 * 0.02562 * 5 4 2 35 35 H 1.07995 * 119.97395 * 180.02562 * 6 5 4 36 36 H 1.08003 * 120.02166 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47154 * 60.00180 * 10 9 8 38 38 H 1.09000 * 109.47378 * 300.00205 * 10 9 8 39 39 H 1.08997 * 109.47109 * 60.00051 * 11 10 9 40 40 H 1.09000 * 109.47145 * 300.00245 * 11 10 9 41 41 H 1.09001 * 109.46730 * 59.99379 * 12 11 10 42 42 H 1.09000 * 109.46661 * 300.00148 * 12 11 10 43 43 H 0.97006 * 119.99959 * 359.97438 * 15 13 12 44 44 H 1.08994 * 113.61426 * 334.57488 * 18 16 15 45 45 H 1.09003 * 113.61255 * 203.66505 * 18 16 15 46 46 H 1.09003 * 110.65328 * 210.41165 * 21 19 18 47 47 H 0.96998 * 126.68952 * 61.21033 * 22 21 19 48 48 H 0.97000 * 124.17392 * 179.97438 * 25 23 22 49 49 H 1.09006 * 113.61529 * 156.33453 * 28 16 15 50 50 H 1.08996 * 113.68933 * 25.44311 * 28 16 15 51 51 H 1.08002 * 120.02837 * 359.97438 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7262 -0.0381 -2.1400 6 6 3.1892 -0.6874 -3.2698 7 6 2.8575 -2.0096 -3.4925 8 6 2.0596 -2.6865 -2.5814 9 8 1.7323 -3.9876 -2.7980 10 6 2.2443 -4.5962 -3.9853 11 6 1.7733 -6.0502 -4.0568 12 6 2.3219 -6.7021 -5.3277 13 6 1.8585 -8.1344 -5.3978 14 8 1.1581 -8.5888 -4.5182 15 7 2.2217 -8.9099 -6.4385 16 6 1.7718 -10.3024 -6.5065 17 1 1.5239 -10.7153 -5.5286 18 6 0.6920 -10.5495 -7.5732 19 6 1.8403 -10.8166 -8.5606 20 1 2.1946 -9.9220 -9.0726 21 6 1.5684 -11.9798 -9.5166 22 7 0.8519 -11.5093 -10.7147 23 6 -0.3292 -12.1532 -10.7344 24 8 -1.1705 -11.9952 -11.5971 25 7 -0.4739 -12.9870 -9.6980 26 6 0.6063 -12.9711 -8.8925 27 8 0.7737 -13.6151 -7.8791 28 6 2.6927 -11.2074 -7.3418 29 6 1.5921 -2.0315 -1.4516 30 1 -0.3933 0.4418 -0.7651 31 1 1.7923 -0.5138 0.8901 32 1 1.5616 2.4679 1.2085 33 1 3.5346 1.7702 -0.0320 34 1 2.9866 0.9957 -1.9676 35 1 3.8103 -0.1601 -3.9787 36 1 3.2191 -2.5161 -4.3753 37 1 3.3337 -4.5673 -3.9677 38 1 1.8805 -4.0535 -4.8578 39 1 0.6838 -6.0787 -4.0746 40 1 2.1367 -6.5932 -3.1844 41 1 3.4114 -6.6734 -5.3094 42 1 1.9588 -6.1592 -6.2003 43 1 2.7811 -8.5460 -7.1426 44 1 0.1058 -9.6629 -7.8147 45 1 0.0743 -11.4255 -7.3746 46 1 2.4992 -12.4737 -9.7957 47 1 1.1682 -10.8590 -11.3611 48 1 -1.2594 -13.5352 -9.5454 49 1 2.6220 -12.2631 -7.0799 50 1 3.7219 -10.8530 -7.3971 51 1 0.9675 -2.5550 -0.7429 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17522896_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:20:40 Heat of formation + Delta-G solvation = -94.352946 kcal Electronic energy + Delta-G solvation = -34406.321794 eV Core-core repulsion = 29467.385855 eV Total energy + Delta-G solvation = -4938.935939 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.172 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.71672 -41.42190 -41.20935 -40.02812 -39.33135 -39.06871 -37.29460 -37.23996 -35.16046 -34.97441 -34.10103 -32.45229 -31.27169 -29.75834 -28.33940 -27.08346 -26.82531 -25.39097 -23.90342 -23.86874 -23.60449 -22.70492 -21.93591 -21.60867 -20.35684 -19.54553 -19.19885 -18.52931 -18.10078 -17.84904 -17.79316 -17.55527 -17.25294 -17.14757 -17.01738 -16.81403 -16.67248 -16.43362 -16.09456 -15.74685 -15.66692 -15.40843 -15.35430 -15.06487 -14.86527 -14.70694 -14.62093 -14.20540 -14.14205 -13.73739 -13.51049 -13.45534 -13.24014 -13.06544 -12.88918 -12.76011 -12.44454 -12.33770 -12.26771 -11.91356 -11.87819 -11.75110 -11.70703 -11.60446 -11.50793 -11.33002 -10.97569 -10.64060 -10.49360 -10.22350 -9.90359 -9.22939 -5.03139 0.21610 0.41546 0.41944 1.25944 1.28082 1.50938 1.63655 1.76974 1.87819 1.91176 1.96979 2.25826 2.68635 2.71903 3.07197 3.09274 3.38690 3.42821 3.47265 3.54733 3.63731 3.73434 3.75621 3.77390 3.84579 3.95491 3.99622 4.08431 4.11958 4.16565 4.18994 4.21743 4.33755 4.37257 4.40683 4.47293 4.54845 4.62119 4.65179 4.68097 4.69641 4.84873 4.90456 4.91030 4.97951 5.11215 5.27844 5.37145 5.39054 5.44672 5.56357 5.69986 5.74823 6.20251 6.30308 6.41021 6.57839 6.99028 7.09694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.070 4.070 3 Si 0.694 3.306 4 C -0.080 4.080 5 C -0.157 4.157 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.132 3.868 9 O -0.311 6.311 10 C 0.060 3.940 11 C -0.106 4.106 12 C -0.137 4.137 13 C 0.517 3.483 14 O -0.529 6.529 15 N -0.716 5.716 16 C 0.125 3.875 17 H 0.109 0.891 18 C -0.154 4.154 19 C -0.112 4.112 20 H 0.113 0.887 21 C 0.100 3.900 22 N -0.721 5.721 23 C 0.704 3.296 24 O -0.540 6.540 25 N -0.680 5.680 26 C 0.530 3.470 27 O -0.460 6.460 28 C -0.138 4.138 29 C -0.126 4.126 30 H 0.379 0.621 31 H 0.115 0.885 32 H -0.255 1.255 33 H -0.258 1.258 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.401 0.599 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.442 0.558 48 H 0.435 0.565 49 H 0.111 0.889 50 H 0.083 0.917 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 3.271 -6.432 9.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.181 4.181 3 Si 0.596 3.404 4 C -0.081 4.081 5 C -0.175 4.175 6 C -0.092 4.092 7 C -0.224 4.224 8 C 0.087 3.913 9 O -0.225 6.225 10 C -0.015 4.015 11 C -0.144 4.144 12 C -0.177 4.177 13 C 0.303 3.697 14 O -0.404 6.404 15 N -0.368 5.368 16 C 0.019 3.981 17 H 0.127 0.873 18 C -0.193 4.193 19 C -0.131 4.131 20 H 0.131 0.869 21 C -0.009 4.009 22 N -0.387 5.387 23 C 0.403 3.597 24 O -0.412 6.412 25 N -0.352 5.352 26 C 0.316 3.684 27 O -0.329 6.329 28 C -0.177 4.177 29 C -0.145 4.145 30 H 0.227 0.773 31 H 0.133 0.867 32 H -0.180 1.180 33 H -0.183 1.183 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.236 0.764 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.150 0.850 47 H 0.287 0.713 48 H 0.278 0.722 49 H 0.129 0.871 50 H 0.102 0.898 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.998 2.850 -4.590 8.072 hybrid contribution 0.363 -0.473 -0.853 1.040 sum 6.360 2.377 -5.443 8.702 Atomic orbital electron populations 1.86518 1.16918 1.81712 1.49223 1.25124 0.85390 1.10244 0.97349 0.94625 0.80907 0.77834 0.87082 1.20148 0.97459 0.93937 0.96548 1.20924 1.01104 0.99819 0.95613 1.20910 0.97815 0.93741 0.96688 1.21307 1.03589 0.96513 1.01028 1.19021 0.94386 0.83450 0.94457 1.86089 1.70932 1.22405 1.43049 1.22816 0.98561 0.93884 0.86276 1.21237 1.03070 0.92338 0.97749 1.21529 1.03086 0.92730 1.00369 1.20609 0.79864 0.88005 0.81201 1.90770 1.36763 1.74721 1.38151 1.45691 1.54030 1.11699 1.25388 1.21711 0.94733 0.81556 1.00109 0.87254 1.23638 0.96696 1.03161 0.95805 1.22903 0.99095 0.97094 0.94057 0.86875 1.22144 0.97242 0.95205 0.86320 1.45543 1.17639 1.47194 1.28286 1.15862 0.83146 0.79092 0.81596 1.91102 1.44393 1.67433 1.38320 1.44364 1.21896 1.43079 1.25845 1.20693 0.82880 0.81876 0.82963 1.90891 1.77135 1.43415 1.21421 1.23461 0.98742 1.01953 0.93520 1.20273 1.02990 0.94000 0.97199 0.77320 0.86727 1.17973 1.18300 0.85450 0.85223 0.85279 0.91788 0.91747 0.89746 0.89757 0.88267 0.88305 0.76412 0.90296 0.89027 0.84991 0.71301 0.72244 0.87072 0.89796 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.45 12.76 -35.23 -0.45 -0.89 16 2 C -0.07 -0.02 2.82 36.01 0.10 0.08 16 3 Si 0.69 -0.64 29.79 -169.99 -5.06 -5.70 16 4 C -0.08 -0.07 5.39 -104.65 -0.56 -0.63 16 5 C -0.16 0.04 8.67 -39.56 -0.34 -0.30 16 6 C -0.07 0.04 10.04 -39.60 -0.40 -0.35 16 7 C -0.21 0.00 9.04 -39.43 -0.36 -0.36 16 8 C 0.13 0.25 6.69 -39.22 -0.26 -0.01 16 9 O -0.31 -0.66 10.14 -19.42 -0.20 -0.86 16 10 C 0.06 -0.09 4.74 37.16 0.18 0.09 16 11 C -0.11 0.10 4.87 -26.73 -0.13 -0.03 16 12 C -0.14 0.50 5.70 -27.88 -0.16 0.34 16 13 C 0.52 -0.27 7.83 -10.99 -0.09 -0.36 16 14 O -0.53 -2.36 15.58 5.56 0.09 -2.27 16 15 N -0.72 2.33 5.26 -53.02 -0.28 2.06 16 16 C 0.12 -0.26 4.32 -67.12 -0.29 -0.55 16 17 H 0.11 0.07 7.47 -51.93 -0.39 -0.31 16 18 C -0.15 0.36 7.10 -25.92 -0.18 0.18 16 19 C -0.11 0.57 3.84 -89.81 -0.34 0.23 16 20 H 0.11 -0.79 8.14 -51.93 -0.42 -1.22 16 21 C 0.10 -0.45 3.81 -68.20 -0.26 -0.71 16 22 N -0.72 2.70 6.24 -59.19 -0.37 2.33 16 23 C 0.70 -0.08 8.99 -88.01 -0.79 -0.87 16 24 O -0.54 -2.33 18.04 5.33 0.10 -2.23 16 25 N -0.68 1.05 5.70 -15.79 -0.09 0.96 16 26 C 0.53 -0.85 6.00 -10.56 -0.06 -0.91 16 27 O -0.46 -0.50 16.30 5.59 0.09 -0.41 16 28 C -0.14 0.60 7.24 -25.92 -0.19 0.41 16 29 C -0.13 -0.27 9.55 -39.43 -0.38 -0.65 16 30 H 0.38 -1.18 8.70 45.56 0.40 -0.78 16 31 H 0.12 0.09 7.96 -51.93 -0.41 -0.32 16 32 H -0.25 -0.59 7.11 56.52 0.40 -0.19 16 33 H -0.26 -0.33 7.11 56.52 0.40 0.07 16 34 H 0.13 -0.27 4.87 -52.49 -0.26 -0.52 16 35 H 0.13 -0.38 8.06 -52.49 -0.42 -0.80 16 36 H 0.13 -0.28 6.30 -52.48 -0.33 -0.61 16 37 H 0.06 -0.18 7.66 -51.93 -0.40 -0.58 16 38 H 0.06 -0.18 7.66 -51.93 -0.40 -0.58 16 39 H 0.08 0.06 8.10 -51.93 -0.42 -0.36 16 40 H 0.08 0.06 8.10 -51.93 -0.42 -0.36 16 41 H 0.10 -0.57 8.14 -51.93 -0.42 -0.99 16 42 H 0.10 -0.56 8.14 -51.93 -0.42 -0.99 16 43 H 0.40 -2.58 8.70 -40.82 -0.36 -2.94 16 44 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 45 H 0.09 -0.07 5.83 -51.93 -0.30 -0.38 16 46 H 0.13 -0.84 8.14 -51.93 -0.42 -1.27 16 47 H 0.44 -2.51 8.96 -40.82 -0.37 -2.88 16 48 H 0.43 -1.13 8.96 -40.82 -0.37 -1.49 16 49 H 0.11 -0.34 6.90 -51.93 -0.36 -0.70 16 50 H 0.08 -0.47 8.14 -51.93 -0.42 -0.90 16 51 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 LS Contribution 421.83 15.07 6.36 6.36 Total: 0.00 -13.49 421.83 -11.29 -24.78 By element: Atomic # 1 Polarization: -12.76 SS G_CDS: -6.96 Total: -19.71 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -4.52 Total: -4.40 kcal Atomic # 7 Polarization: 6.09 SS G_CDS: -0.74 Total: 5.35 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.37 Total: -6.67 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -5.06 Total: -5.70 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -13.49 -11.29 -24.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.569 kcal (2) G-P(sol) polarization free energy of solvation -13.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds