Wall clock time and date at job start Sun Mar 7 2021 08:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.47168 * 2 1 4 4 C 1.50702 * 109.47216 * 239.99671 * 2 1 3 5 5 C 1.38242 * 119.97040 * 120.00181 * 4 2 1 6 6 C 1.38291 * 120.11162 * 179.97438 * 5 4 2 7 7 C 1.38125 * 120.05122 * 0.04902 * 6 5 4 8 8 C 1.38747 * 119.94622 * 359.97438 * 7 6 5 9 9 O 1.35900 * 120.05487 * 180.02562 * 8 7 6 10 10 C 1.42902 * 116.99924 * 359.97438 * 9 8 7 11 11 C 1.53003 * 109.46987 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47146 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47205 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99785 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99818 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00090 * 179.97438 * 15 13 12 17 17 H 1.09005 * 112.84689 * 336.20068 * 16 15 13 18 18 C 1.53785 * 113.61317 * 107.49953 * 16 15 13 19 19 C 1.53782 * 87.07636 * 89.12095 * 18 16 15 20 20 H 1.08999 * 113.68787 * 270.86813 * 19 18 16 21 21 C 1.53000 * 113.61285 * 139.98144 * 19 18 16 22 22 N 1.47316 * 110.59895 * 87.50114 * 21 19 18 23 23 C 1.34530 * 106.61941 * 241.47237 * 22 21 19 24 24 O 1.21539 * 123.77103 * 179.97438 * 23 22 21 25 25 N 1.33794 * 112.45342 * 359.97438 * 23 22 21 26 26 C 1.34760 * 111.64866 * 359.97438 * 25 23 22 27 27 O 1.21237 * 127.16264 * 180.02562 * 26 25 23 28 28 C 1.53775 * 113.61698 * 205.00075 * 16 15 13 29 29 C 1.38167 * 119.97190 * 300.30179 * 4 2 1 30 30 H 0.96702 * 113.99732 * 59.99735 * 1 2 3 31 31 H 1.09003 * 109.46660 * 119.99734 * 2 1 3 32 32 H 1.48495 * 110.00227 * 60.00187 * 3 2 1 33 33 H 1.48501 * 109.99839 * 181.31525 * 3 2 1 34 34 H 1.07997 * 119.94437 * 0.02562 * 5 4 2 35 35 H 1.07995 * 119.97395 * 180.02562 * 6 5 4 36 36 H 1.08003 * 120.02166 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47154 * 60.00180 * 10 9 8 38 38 H 1.09000 * 109.47378 * 300.00205 * 10 9 8 39 39 H 1.08997 * 109.47109 * 60.00051 * 11 10 9 40 40 H 1.09000 * 109.47145 * 300.00245 * 11 10 9 41 41 H 1.09001 * 109.46730 * 59.99379 * 12 11 10 42 42 H 1.09000 * 109.46661 * 300.00148 * 12 11 10 43 43 H 0.97006 * 119.99959 * 359.97438 * 15 13 12 44 44 H 1.08994 * 113.61426 * 334.57488 * 18 16 15 45 45 H 1.09003 * 113.61255 * 203.66505 * 18 16 15 46 46 H 1.09003 * 110.65328 * 210.41165 * 21 19 18 47 47 H 0.96998 * 126.68952 * 61.21033 * 22 21 19 48 48 H 0.97000 * 124.17392 * 179.97438 * 25 23 22 49 49 H 1.09006 * 113.61529 * 156.33453 * 28 16 15 50 50 H 1.08996 * 113.68933 * 25.44311 * 28 16 15 51 51 H 1.08002 * 120.02837 * 359.97438 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7262 -0.0381 -2.1400 6 6 3.1892 -0.6874 -3.2698 7 6 2.8575 -2.0096 -3.4925 8 6 2.0596 -2.6865 -2.5814 9 8 1.7323 -3.9876 -2.7980 10 6 2.2443 -4.5962 -3.9853 11 6 1.7733 -6.0502 -4.0568 12 6 2.3219 -6.7021 -5.3277 13 6 1.8585 -8.1344 -5.3978 14 8 1.1581 -8.5888 -4.5182 15 7 2.2217 -8.9099 -6.4385 16 6 1.7718 -10.3024 -6.5065 17 1 1.5239 -10.7153 -5.5286 18 6 0.6920 -10.5495 -7.5732 19 6 1.8403 -10.8166 -8.5606 20 1 2.1946 -9.9220 -9.0726 21 6 1.5684 -11.9798 -9.5166 22 7 0.8519 -11.5093 -10.7147 23 6 -0.3292 -12.1532 -10.7344 24 8 -1.1705 -11.9952 -11.5971 25 7 -0.4739 -12.9870 -9.6980 26 6 0.6063 -12.9711 -8.8925 27 8 0.7737 -13.6151 -7.8791 28 6 2.6927 -11.2074 -7.3418 29 6 1.5921 -2.0315 -1.4516 30 1 -0.3933 0.4418 -0.7651 31 1 1.7923 -0.5138 0.8901 32 1 1.5616 2.4679 1.2085 33 1 3.5346 1.7702 -0.0320 34 1 2.9866 0.9957 -1.9676 35 1 3.8103 -0.1601 -3.9787 36 1 3.2191 -2.5161 -4.3753 37 1 3.3337 -4.5673 -3.9677 38 1 1.8805 -4.0535 -4.8578 39 1 0.6838 -6.0787 -4.0746 40 1 2.1367 -6.5932 -3.1844 41 1 3.4114 -6.6734 -5.3094 42 1 1.9588 -6.1592 -6.2003 43 1 2.7811 -8.5460 -7.1426 44 1 0.1058 -9.6629 -7.8147 45 1 0.0743 -11.4255 -7.3746 46 1 2.4992 -12.4737 -9.7957 47 1 1.1682 -10.8590 -11.3611 48 1 -1.2594 -13.5352 -9.5454 49 1 2.6220 -12.2631 -7.0799 50 1 3.7219 -10.8530 -7.3971 51 1 0.9675 -2.5550 -0.7429 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:20:38 Heat of formation + Delta-G solvation = -103.724876 kcal Electronic energy + Delta-G solvation = -34406.728192 eV Core-core repulsion = 29467.385855 eV Total energy + Delta-G solvation = -4939.342336 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.172 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.59692 -41.35700 -41.16350 -40.00679 -39.28251 -39.03876 -37.30872 -37.26343 -35.04643 -34.89522 -33.96828 -32.43726 -31.24260 -29.59228 -28.18971 -26.85685 -26.81699 -25.22854 -23.79813 -23.79048 -23.57802 -22.56264 -21.89395 -21.48566 -20.15715 -19.46441 -19.18387 -18.41562 -17.99485 -17.81510 -17.73689 -17.45377 -17.18369 -17.00462 -16.93381 -16.78880 -16.56365 -16.37914 -16.11781 -15.70284 -15.57794 -15.37386 -15.23439 -14.99480 -14.78273 -14.61449 -14.51997 -14.19280 -14.18146 -13.57958 -13.33828 -13.28710 -13.11224 -13.03577 -12.74869 -12.67435 -12.36248 -12.30706 -12.23945 -11.97032 -11.66590 -11.61339 -11.60986 -11.58042 -11.51789 -11.22655 -10.98183 -10.50918 -10.45495 -10.09687 -9.90197 -9.23474 -4.98886 0.22594 0.41780 0.50984 1.29965 1.40969 1.59057 1.64946 1.89308 1.92261 1.98573 2.13856 2.36849 2.69693 2.89499 3.34641 3.35722 3.50062 3.61340 3.66564 3.67970 3.75700 3.86063 3.89503 3.98272 4.05366 4.12322 4.21421 4.26012 4.28394 4.35665 4.38773 4.41550 4.43408 4.53002 4.60645 4.64925 4.68307 4.70426 4.80731 4.89969 4.99358 4.99689 4.99856 5.01798 5.14224 5.18721 5.30014 5.39701 5.46405 5.57076 5.76015 5.78950 5.87572 6.35520 6.44339 6.54061 6.74230 7.08967 7.26721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.794 3.206 4 C -0.085 4.085 5 C -0.161 4.161 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.116 3.884 9 O -0.341 6.341 10 C 0.058 3.942 11 C -0.104 4.104 12 C -0.125 4.125 13 C 0.509 3.491 14 O -0.592 6.592 15 N -0.696 5.696 16 C 0.115 3.885 17 H 0.070 0.930 18 C -0.161 4.161 19 C -0.091 4.091 20 H 0.149 0.851 21 C 0.108 3.892 22 N -0.700 5.700 23 C 0.702 3.298 24 O -0.589 6.589 25 N -0.681 5.681 26 C 0.527 3.473 27 O -0.491 6.491 28 C -0.124 4.124 29 C -0.153 4.153 30 H 0.395 0.605 31 H 0.101 0.899 32 H -0.301 1.301 33 H -0.280 1.280 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.422 0.578 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.167 0.833 47 H 0.454 0.546 48 H 0.435 0.565 49 H 0.097 0.903 50 H 0.110 0.890 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.462 5.153 -9.434 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.194 4.194 3 Si 0.699 3.301 4 C -0.086 4.086 5 C -0.178 4.178 6 C -0.089 4.089 7 C -0.223 4.223 8 C 0.071 3.929 9 O -0.255 6.255 10 C -0.016 4.016 11 C -0.142 4.142 12 C -0.164 4.164 13 C 0.297 3.703 14 O -0.472 6.472 15 N -0.349 5.349 16 C 0.008 3.992 17 H 0.089 0.911 18 C -0.200 4.200 19 C -0.110 4.110 20 H 0.167 0.833 21 C 0.000 4.000 22 N -0.365 5.365 23 C 0.401 3.599 24 O -0.466 6.466 25 N -0.351 5.351 26 C 0.314 3.686 27 O -0.362 6.362 28 C -0.163 4.163 29 C -0.172 4.172 30 H 0.245 0.755 31 H 0.119 0.881 32 H -0.229 1.229 33 H -0.207 1.207 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.261 0.739 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.184 0.816 47 H 0.302 0.698 48 H 0.278 0.722 49 H 0.115 0.885 50 H 0.129 0.871 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.162 4.730 -7.660 12.844 hybrid contribution -0.651 -1.121 0.173 1.308 sum 8.511 3.609 -7.487 11.896 Atomic orbital electron populations 1.86472 1.17390 1.82293 1.50448 1.25404 0.85287 1.11784 0.96894 0.93507 0.77750 0.74315 0.84552 1.20211 0.97864 0.93492 0.96992 1.21192 1.00459 1.00728 0.95454 1.21323 0.97295 0.93564 0.96767 1.21610 1.02653 0.96862 1.01217 1.19201 0.95215 0.83556 0.94946 1.86058 1.71733 1.22888 1.44830 1.23003 0.99695 0.93067 0.85867 1.21169 1.01482 0.93098 0.98444 1.21535 1.04817 0.90230 0.99846 1.21278 0.78929 0.89352 0.80735 1.90754 1.39770 1.76073 1.40604 1.45504 1.53316 1.10870 1.25179 1.21665 0.96247 0.82624 0.98616 0.91131 1.23608 0.97236 1.01996 0.97141 1.22917 0.96889 0.97925 0.93294 0.83293 1.22297 0.97301 0.94708 0.85697 1.45475 1.16191 1.46424 1.28410 1.16007 0.83553 0.79236 0.81110 1.91068 1.46227 1.69131 1.40171 1.44409 1.22237 1.42794 1.25642 1.21195 0.83146 0.81890 0.82375 1.90880 1.77748 1.44885 1.22709 1.23349 0.99724 1.00612 0.92606 1.20310 1.04149 0.94969 0.97810 0.75473 0.88137 1.22933 1.20717 0.83483 0.82193 0.82708 0.89747 0.89614 0.92428 0.92427 0.85029 0.85094 0.73907 0.90996 0.91220 0.81584 0.69798 0.72192 0.88451 0.87139 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.73 12.76 -148.98 -1.90 -3.63 16 2 C -0.08 -0.15 2.82 71.24 0.20 0.05 16 3 Si 0.79 -1.55 29.79 68.60 2.04 0.50 16 4 C -0.09 -0.21 5.39 -19.88 -0.11 -0.31 16 5 C -0.16 0.27 8.67 22.28 0.19 0.47 16 6 C -0.07 0.25 10.04 22.26 0.22 0.47 16 7 C -0.20 0.33 9.04 22.36 0.20 0.53 16 8 C 0.12 0.52 6.69 22.50 0.15 0.67 16 9 O -0.34 -1.93 10.14 -92.42 -0.94 -2.86 16 10 C 0.06 -0.20 4.74 71.98 0.34 0.14 16 11 C -0.10 0.09 4.87 30.60 0.15 0.24 16 12 C -0.12 1.09 5.70 29.85 0.17 1.26 16 13 C 0.51 -0.33 7.83 87.66 0.69 0.35 16 14 O -0.59 -7.02 15.58 -3.02 -0.05 -7.07 16 15 N -0.70 5.22 5.26 -440.04 -2.32 2.90 16 16 C 0.11 -0.41 4.32 45.52 0.20 -0.22 16 17 H 0.07 0.32 7.47 -2.38 -0.02 0.31 16 18 C -0.16 0.68 7.10 31.12 0.22 0.90 16 19 C -0.09 1.13 3.84 -10.27 -0.04 1.09 16 20 H 0.15 -2.79 8.14 -2.39 -0.02 -2.81 16 21 C 0.11 -1.18 3.81 44.37 0.17 -1.01 16 22 N -0.70 6.39 6.24 -459.59 -2.87 3.52 16 23 C 0.70 -0.01 8.99 179.44 1.61 1.61 16 24 O -0.59 -5.69 18.04 -3.84 -0.07 -5.76 16 25 N -0.68 1.46 5.70 -441.12 -2.52 -1.06 16 26 C 0.53 -1.52 6.00 87.94 0.53 -0.99 16 27 O -0.49 -1.71 16.30 -2.90 -0.05 -1.76 16 28 C -0.12 1.27 7.24 31.12 0.23 1.49 16 29 C -0.15 -0.98 9.55 22.37 0.21 -0.77 16 30 H 0.40 -2.15 8.70 -74.06 -0.64 -2.79 16 31 H 0.10 0.39 7.96 -2.39 -0.02 0.37 16 32 H -0.30 -1.72 7.11 99.48 0.71 -1.01 16 33 H -0.28 -0.50 7.11 99.48 0.71 0.21 16 34 H 0.15 -0.92 4.87 -2.91 -0.01 -0.94 16 35 H 0.16 -1.55 8.06 -2.91 -0.02 -1.57 16 36 H 0.16 -1.16 6.30 -2.91 -0.02 -1.18 16 37 H 0.08 -0.64 7.66 -2.39 -0.02 -0.66 16 38 H 0.09 -0.67 7.66 -2.39 -0.02 -0.69 16 39 H 0.06 0.24 8.10 -2.39 -0.02 0.22 16 40 H 0.06 0.24 8.10 -2.39 -0.02 0.22 16 41 H 0.13 -1.94 8.14 -2.39 -0.02 -1.96 16 42 H 0.13 -1.93 8.14 -2.39 -0.02 -1.95 16 43 H 0.42 -6.79 8.70 -92.70 -0.81 -7.60 16 44 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.07 0.03 5.83 -2.39 -0.01 0.02 16 46 H 0.17 -2.73 8.14 -2.39 -0.02 -2.75 16 47 H 0.45 -6.28 8.96 -92.71 -0.83 -7.11 16 48 H 0.44 -1.46 8.96 -92.71 -0.83 -2.29 16 49 H 0.10 -0.62 6.90 -2.38 -0.02 -0.64 16 50 H 0.11 -1.64 8.14 -2.39 -0.02 -1.66 16 51 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 Total: 0.00 -39.35 421.83 -5.36 -44.71 By element: Atomic # 1 Polarization: -33.43 SS G_CDS: -2.04 Total: -35.47 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.34 Total: 5.98 kcal Atomic # 7 Polarization: 13.06 SS G_CDS: -7.70 Total: 5.36 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -3.00 Total: -21.07 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.04 Total: 0.50 kcal Total: -39.35 -5.36 -44.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.014 kcal (2) G-P(sol) polarization free energy of solvation -39.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds