Wall clock time and date at job start Sun Mar 7 2021 08:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86296 * 109.47302 * 2 1 4 4 C 1.50706 * 109.46700 * 119.99776 * 2 1 3 5 5 C 1.38244 * 119.97449 * 245.01979 * 4 2 1 6 6 C 1.38280 * 120.11226 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.05697 * 359.67551 * 6 5 4 8 8 C 1.38749 * 119.93989 * 0.60151 * 7 6 5 9 9 O 1.35901 * 120.05424 * 179.69787 * 8 7 6 10 10 C 1.42904 * 116.99936 * 359.72306 * 9 8 7 11 11 C 1.50703 * 109.46869 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00323 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99817 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.09004 * 112.91032 * 23.75105 * 14 13 11 16 16 C 1.53784 * 113.61434 * 155.00095 * 14 13 11 17 17 C 1.53787 * 87.07923 * 89.11404 * 16 14 13 18 18 H 1.09000 * 113.61529 * 270.88430 * 17 16 14 19 19 C 1.53005 * 113.61178 * 140.06478 * 17 16 14 20 20 N 1.47307 * 110.59798 * 180.02562 * 19 17 16 21 21 C 1.34525 * 106.61989 * 118.52731 * 20 19 17 22 22 O 1.21540 * 123.77081 * 179.97438 * 21 20 19 23 23 N 1.33796 * 112.45708 * 359.97438 * 21 20 19 24 24 C 1.34764 * 111.64371 * 0.02562 * 23 21 20 25 25 O 1.21231 * 127.15875 * 180.02562 * 24 23 21 26 26 C 1.53779 * 113.61357 * 252.49697 * 14 13 11 27 27 C 1.38170 * 119.97190 * 64.99960 * 4 2 1 28 28 H 0.96700 * 113.99550 * 59.99689 * 1 2 3 29 29 H 1.09001 * 109.47164 * 239.99300 * 2 1 3 30 30 H 1.48498 * 110.00134 * 298.67656 * 3 2 1 31 31 H 1.48504 * 110.00337 * 59.99911 * 3 2 1 32 32 H 1.07999 * 119.94154 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.97079 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.03061 * 180.32001 * 7 6 5 35 35 H 1.08994 * 109.46996 * 60.00100 * 10 9 8 36 36 H 1.08990 * 109.47179 * 299.99909 * 10 9 8 37 37 H 0.97000 * 119.99785 * 0.02562 * 13 11 10 38 38 H 1.09004 * 113.61451 * 334.56890 * 16 14 13 39 39 H 1.08994 * 113.61477 * 203.66192 * 16 14 13 40 40 H 1.09001 * 110.53074 * 57.17011 * 19 17 16 41 41 H 0.97003 * 126.69113 * 298.49167 * 20 19 17 42 42 H 0.96993 * 124.17407 * 179.97438 * 23 21 20 43 43 H 1.09006 * 113.61307 * 156.33848 * 26 14 13 44 44 H 1.08999 * 113.69146 * 25.44334 * 26 14 13 45 45 H 1.08004 * 120.02791 * 0.04115 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 2.6383 -0.0116 2.1913 6 6 3.1009 -0.6607 3.3212 7 6 2.8517 -2.0081 3.4959 8 6 2.1474 -2.7129 2.5304 9 8 1.9062 -4.0399 2.6970 10 6 2.4125 -4.6469 3.8876 11 6 2.0515 -6.1100 3.8980 12 8 1.4232 -6.5862 2.9765 13 7 2.4280 -6.8895 4.9311 14 6 2.0776 -8.3120 4.9410 15 1 1.8985 -8.7119 3.9429 16 6 3.0275 -9.1744 5.7888 17 6 2.1009 -8.8831 6.9812 18 1 2.3680 -7.9810 7.5315 19 6 1.8775 -10.0912 7.8932 20 7 0.9827 -9.7396 9.0092 21 6 -0.1024 -10.5265 8.8949 22 8 -1.0444 -10.4939 9.6622 23 7 -0.0287 -11.3490 7.8422 24 6 1.1207 -11.1804 7.1592 25 8 1.4754 -11.7754 6.1643 26 6 0.9768 -8.6682 5.9540 27 6 1.6844 -2.0595 1.3978 28 1 -0.3932 0.4418 -0.7650 29 1 1.7924 -0.5139 -0.8899 30 1 1.5881 2.4585 -1.2243 31 1 1.5616 2.4679 1.2085 32 1 2.8303 1.0429 2.0587 33 1 3.6533 -0.1127 4.0701 34 1 3.2088 -2.5134 4.3810 35 1 1.9756 -4.1582 4.7584 36 1 3.4967 -4.5403 3.9169 37 1 2.9309 -6.5087 5.6679 38 1 4.0250 -8.7483 5.8968 39 1 3.0439 -10.2239 5.4949 40 1 2.8290 -10.4682 8.2682 41 1 1.1445 -9.0713 9.6934 42 1 -0.7172 -11.9882 7.6010 43 1 0.4327 -9.5793 5.7051 44 1 0.3179 -7.8343 6.1961 45 1 1.1323 -2.6051 0.6468 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:21:18 Heat of formation + Delta-G solvation = -86.726770 kcal Electronic energy + Delta-G solvation = -31223.602974 eV Core-core repulsion = 26596.072969 eV Total energy + Delta-G solvation = -4627.530005 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.140 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.59904 -41.63902 -40.98228 -39.98571 -39.30680 -38.70065 -37.42018 -37.25920 -35.09959 -34.15524 -32.60007 -31.68587 -29.92943 -28.73367 -26.85489 -26.80301 -25.19228 -23.79081 -23.66040 -23.09565 -22.40341 -21.61591 -20.21406 -19.46804 -19.18314 -18.60408 -18.43106 -18.02122 -17.76495 -17.46341 -17.41268 -17.11971 -16.90661 -16.76333 -16.48880 -15.86985 -15.77094 -15.74234 -15.50689 -15.42924 -15.04626 -14.90487 -14.53360 -14.46481 -14.14259 -13.77385 -13.72038 -13.53223 -13.30869 -13.17340 -12.76867 -12.52297 -12.36313 -12.13151 -11.99333 -11.70455 -11.66546 -11.63543 -11.51634 -11.22021 -11.04867 -10.55731 -10.46105 -10.19889 -9.91468 -9.28307 -4.92260 0.20660 0.39567 0.51569 1.26030 1.38516 1.41752 1.45268 1.61655 1.92449 1.94247 2.14632 2.55044 2.63706 2.90209 3.32822 3.34932 3.37947 3.49691 3.65177 3.72426 3.79469 3.84187 4.01313 4.06256 4.10047 4.13844 4.25441 4.27404 4.27848 4.39117 4.48559 4.58519 4.65660 4.69426 4.74898 4.88481 4.97040 4.97914 4.99145 5.12667 5.23693 5.36774 5.46879 5.48828 5.69074 5.79257 5.88140 6.27051 6.36174 6.45745 6.54588 7.09201 7.11335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.099 4.099 3 Si 0.783 3.217 4 C -0.048 4.048 5 C -0.161 4.161 6 C -0.070 4.070 7 C -0.200 4.200 8 C 0.114 3.886 9 O -0.325 6.325 10 C 0.038 3.962 11 C 0.513 3.487 12 O -0.575 6.575 13 N -0.686 5.686 14 C 0.116 3.884 15 H 0.073 0.927 16 C -0.124 4.124 17 C -0.092 4.092 18 H 0.152 0.848 19 C 0.108 3.892 20 N -0.700 5.700 21 C 0.701 3.299 22 O -0.590 6.590 23 N -0.681 5.681 24 C 0.526 3.474 25 O -0.490 6.490 26 C -0.160 4.160 27 C -0.152 4.152 28 H 0.395 0.605 29 H 0.089 0.911 30 H -0.288 1.288 31 H -0.292 1.292 32 H 0.145 0.855 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.426 0.574 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.169 0.831 41 H 0.454 0.546 42 H 0.435 0.565 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.399 4.511 5.713 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.206 4.206 3 Si 0.688 3.312 4 C -0.048 4.048 5 C -0.179 4.179 6 C -0.087 4.087 7 C -0.218 4.218 8 C 0.069 3.931 9 O -0.238 6.238 10 C -0.040 4.040 11 C 0.300 3.700 12 O -0.454 6.454 13 N -0.341 5.341 14 C 0.010 3.990 15 H 0.091 0.909 16 C -0.163 4.163 17 C -0.111 4.111 18 H 0.170 0.830 19 C 0.000 4.000 20 N -0.365 5.365 21 C 0.401 3.599 22 O -0.467 6.467 23 N -0.351 5.351 24 C 0.313 3.687 25 O -0.361 6.361 26 C -0.199 4.199 27 C -0.171 4.171 28 H 0.245 0.755 29 H 0.107 0.893 30 H -0.215 1.215 31 H -0.219 1.219 32 H 0.162 0.838 33 H 0.183 0.817 34 H 0.184 0.816 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.265 0.735 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.186 0.814 41 H 0.302 0.698 42 H 0.278 0.722 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.520 4.289 5.351 12.558 hybrid contribution -2.020 -0.524 -0.415 2.128 sum 8.499 3.765 4.936 10.525 Atomic orbital electron populations 1.86558 1.18698 1.80891 1.50947 1.25270 0.84067 1.12967 0.98345 0.93927 0.89990 0.70864 0.76459 1.19257 0.97325 0.92446 0.95777 1.21213 1.01193 1.00595 0.94861 1.21331 0.96839 0.93666 0.96907 1.21651 1.03493 0.96226 1.00471 1.19153 0.96293 0.82333 0.95295 1.86122 1.74750 1.20773 1.42187 1.22756 1.02941 0.89710 0.88551 1.20645 0.78645 0.88733 0.82014 1.90782 1.40970 1.75926 1.37685 1.45236 1.57340 1.08411 1.23087 1.21712 0.97043 0.80948 0.99271 0.90900 1.23390 0.99070 1.01192 0.92624 1.22952 0.96581 0.97802 0.93785 0.83019 1.22284 0.96450 0.94143 0.87104 1.45459 1.18046 1.41570 1.31410 1.16014 0.83600 0.79723 0.80611 1.91069 1.36421 1.72342 1.46838 1.44415 1.23255 1.39305 1.28159 1.21212 0.81466 0.83193 0.82826 1.90871 1.71348 1.50504 1.23354 1.23580 0.97350 1.01845 0.97098 1.20308 1.04080 0.94624 0.98074 0.75511 0.89347 1.21533 1.21948 0.83805 0.81692 0.81606 0.85596 0.85009 0.73528 0.86840 0.88190 0.81365 0.69810 0.72225 0.91262 0.90869 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.12 12.81 -148.98 -1.91 -5.03 16 2 C -0.10 -0.20 2.79 71.24 0.20 0.00 16 3 Si 0.78 -1.39 29.85 68.60 2.05 0.66 16 4 C -0.05 -0.22 5.38 -19.88 -0.11 -0.33 16 5 C -0.16 -0.02 8.67 22.28 0.19 0.17 16 6 C -0.07 0.24 10.04 22.25 0.22 0.46 16 7 C -0.20 0.52 9.04 22.37 0.20 0.73 16 8 C 0.11 0.56 6.69 22.50 0.15 0.71 16 9 O -0.32 -2.29 9.67 -73.40 -0.71 -3.00 16 10 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 11 C 0.51 0.90 7.91 87.66 0.69 1.60 16 12 O -0.58 -8.72 16.10 16.01 0.26 -8.46 16 13 N -0.69 4.92 5.26 -440.03 -2.32 2.61 16 14 C 0.12 -0.43 4.32 45.52 0.20 -0.23 16 15 H 0.07 0.33 7.47 -2.39 -0.02 0.31 16 16 C -0.12 1.30 7.22 31.12 0.22 1.53 16 17 C -0.09 1.18 3.83 -10.26 -0.04 1.14 16 18 H 0.15 -2.97 8.14 -2.39 -0.02 -2.99 16 19 C 0.11 -1.22 3.83 44.37 0.17 -1.05 16 20 N -0.70 6.39 6.24 -459.60 -2.87 3.52 16 21 C 0.70 0.09 8.99 179.44 1.61 1.71 16 22 O -0.59 -5.87 18.04 -3.84 -0.07 -5.94 16 23 N -0.68 1.44 5.70 -441.12 -2.52 -1.08 16 24 C 0.53 -1.65 5.93 87.94 0.52 -1.13 16 25 O -0.49 -1.48 16.21 -2.88 -0.05 -1.53 16 26 C -0.16 0.71 7.15 31.12 0.22 0.93 16 27 C -0.15 -1.24 9.62 22.37 0.22 -1.03 16 28 H 0.39 -1.14 8.74 -74.06 -0.65 -1.79 16 29 H 0.09 -0.08 7.96 -2.39 -0.02 -0.10 16 30 H -0.29 -0.71 7.11 99.48 0.71 0.00 16 31 H -0.29 -1.27 7.05 99.48 0.70 -0.57 16 32 H 0.14 -0.53 4.86 -2.91 -0.01 -0.55 16 33 H 0.17 -1.69 8.06 -2.91 -0.02 -1.71 16 34 H 0.17 -1.80 6.30 -2.91 -0.02 -1.81 16 35 H 0.13 -1.35 7.65 -2.39 -0.02 -1.37 16 36 H 0.13 -1.54 7.67 -2.39 -0.02 -1.56 16 37 H 0.43 -7.08 8.70 -92.71 -0.81 -7.89 16 38 H 0.11 -1.76 8.14 -2.39 -0.02 -1.78 16 39 H 0.10 -0.63 6.46 -2.39 -0.02 -0.65 16 40 H 0.17 -2.88 8.14 -2.39 -0.02 -2.89 16 41 H 0.45 -6.24 8.96 -92.71 -0.83 -7.07 16 42 H 0.44 -1.40 8.96 -92.71 -0.83 -2.24 16 43 H 0.07 0.01 6.15 -2.38 -0.01 -0.01 16 44 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16 Total: 0.00 -41.46 379.26 -5.05 -46.50 By element: Atomic # 1 Polarization: -31.71 SS G_CDS: -1.97 Total: -33.68 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.05 Total: 5.43 kcal Atomic # 7 Polarization: 12.75 SS G_CDS: -7.70 Total: 5.04 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -2.48 Total: -23.96 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.05 Total: 0.66 kcal Total: -41.46 -5.05 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.223 kcal (2) G-P(sol) polarization free energy of solvation -41.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds