Wall clock time and date at job start Sun Mar 7 2021 08:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37644 * 125.67845 * 2 1 4 4 C 1.46670 * 126.22402 * 359.97438 * 3 2 1 5 5 O 1.21691 * 120.00000 * 5.27648 * 4 3 2 6 6 N 1.34780 * 119.99973 * 185.26708 * 4 3 2 7 7 C 1.46497 * 119.99780 * 174.75874 * 6 4 3 8 8 H 1.09006 * 112.85464 * 336.19496 * 7 6 4 9 9 C 1.53961 * 113.61699 * 107.46693 * 7 6 4 10 10 C 1.53786 * 87.01534 * 89.19824 * 9 7 6 11 11 H 1.09004 * 113.61513 * 270.76916 * 10 9 7 12 12 C 1.53002 * 113.61133 * 139.95666 * 10 9 7 13 13 N 1.47311 * 110.53324 * 331.72702 * 12 10 9 14 14 C 1.34526 * 106.61908 * 118.87345 * 13 12 10 15 15 O 1.21541 * 123.76709 * 179.85360 * 14 13 12 16 16 N 1.33786 * 112.45975 * 359.58826 * 14 13 12 17 17 C 1.34770 * 111.64267 * 0.27010 * 16 14 13 18 18 O 1.21236 * 127.15742 * 180.02562 * 17 16 14 19 19 C 1.53776 * 87.17475 * 25.36425 * 10 9 7 20 20 C 1.37885 * 107.55246 * 180.26161 * 3 2 1 21 21 C 1.39884 * 107.08789 * 359.61877 * 20 3 2 22 22 Br 1.89107 * 126.07065 * 180.10777 * 21 20 3 23 23 C 1.35502 * 107.85553 * 0.38652 * 21 20 3 24 24 C 1.50697 * 125.57457 * 179.74398 * 23 21 20 25 25 O 1.42898 * 109.47414 * 210.02327 * 24 23 21 26 26 Si 1.86302 * 109.46752 * 330.02226 * 24 23 21 27 27 H 1.09008 * 109.46672 * 94.12024 * 1 2 3 28 28 H 1.08995 * 109.47219 * 214.12152 * 1 2 3 29 29 H 1.08999 * 109.46804 * 334.12422 * 1 2 3 30 30 H 0.97001 * 120.00060 * 354.75554 * 6 4 3 31 31 H 1.08999 * 113.66314 * 334.67207 * 9 7 6 32 32 H 1.08997 * 113.61650 * 203.71748 * 9 7 6 33 33 H 1.08992 * 110.53263 * 208.69213 * 12 10 9 34 34 H 0.97005 * 126.69161 * 298.76255 * 13 12 10 35 35 H 0.96993 * 124.18145 * 180.29410 * 16 14 13 36 36 H 1.08997 * 113.61660 * 89.16068 * 19 10 9 37 37 H 1.08998 * 113.61143 * 219.97899 * 19 10 9 38 38 H 1.07998 * 126.45602 * 179.75372 * 20 3 2 39 39 H 1.09000 * 109.47084 * 90.01712 * 24 23 21 40 40 H 0.96696 * 113.99941 * 180.02562 * 25 24 23 41 41 H 1.48508 * 109.99825 * 178.68272 * 26 24 23 42 42 H 1.48504 * 109.99973 * 299.99755 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1181 0.0000 4 6 1.8121 2.5122 -0.0005 5 8 0.6256 2.7646 0.0959 6 7 2.7076 3.5138 -0.1076 7 6 2.2464 4.8994 -0.2238 8 1 1.2334 4.9767 -0.6189 9 6 2.4792 5.7356 1.0478 10 6 3.8573 6.0908 0.4650 11 1 4.6425 5.3868 0.7405 12 6 4.2609 7.5492 0.6911 13 7 3.0672 8.4074 0.7827 14 6 3.0873 8.9652 2.0067 15 8 2.2399 9.7366 2.4116 16 7 4.1414 8.5716 2.7304 17 6 4.9239 7.7155 2.0440 18 8 5.9453 7.1877 2.4288 19 6 3.2531 5.8271 -0.9243 20 6 3.5782 0.6891 -0.0060 21 6 3.5529 -0.7095 -0.0007 22 35 5.0610 -1.8504 -0.0024 23 6 2.2558 -1.1015 -0.0005 24 6 1.7713 -2.5285 -0.0011 25 8 0.5133 -2.6042 -0.6748 26 14 3.0121 -3.6052 -0.8797 27 1 -0.3633 -0.0738 -1.0251 28 1 -0.3633 -0.8507 0.5764 29 1 -0.3633 0.9246 0.4485 30 1 3.6575 3.3172 -0.1077 31 1 2.5309 5.1404 1.9594 32 1 1.8092 6.5908 1.1368 33 1 4.9227 7.8905 -0.1049 34 1 2.3979 8.5450 0.0941 35 1 4.3203 8.8657 3.6372 36 1 2.7951 6.7073 -1.3755 37 1 3.9292 5.3069 -1.6028 38 1 4.4583 1.3150 -0.0113 39 1 1.6545 -2.8729 1.0265 40 1 0.1407 -3.4956 -0.7129 41 1 2.5613 -5.0201 -0.8594 42 1 3.1804 -3.1459 -2.2818 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_5000100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:21:32 Heat of formation + Delta-G solvation = -31.584986 kcal Electronic energy + Delta-G solvation = -30934.731271 eV Core-core repulsion = 26351.256812 eV Total energy + Delta-G solvation = -4583.474459 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.046 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.52274 -42.87436 -40.98535 -39.72972 -39.27208 -37.93102 -37.16153 -35.28819 -34.59853 -33.95262 -32.33940 -31.22952 -29.64789 -27.40398 -27.15283 -26.75100 -25.00013 -23.83639 -23.28859 -22.51880 -21.73073 -20.60952 -20.23353 -19.24496 -18.92341 -18.57015 -18.05324 -17.72996 -17.40580 -17.10655 -16.90582 -16.84641 -16.57719 -16.18519 -15.74571 -15.62430 -15.45902 -15.33498 -14.94614 -14.78633 -14.62369 -14.61392 -14.28329 -14.02583 -13.84814 -13.48384 -13.21083 -13.17743 -12.95499 -12.77972 -12.47573 -12.30871 -12.02208 -11.80872 -11.58294 -11.49272 -11.43573 -11.21104 -11.16887 -10.82830 -10.45517 -10.22264 -9.87802 -9.30986 -4.68898 0.14432 0.34212 0.54863 0.88679 1.24392 1.40867 1.44273 1.56534 1.94077 1.95245 2.11203 2.18107 2.25430 2.92322 2.92520 3.40585 3.45407 3.47102 3.53302 3.63704 3.77884 3.81053 4.14946 4.19774 4.20429 4.25164 4.30073 4.38823 4.42220 4.58524 4.62953 4.69605 4.77050 4.84825 4.94893 5.02398 5.05621 5.14793 5.25171 5.53038 5.61461 5.78008 5.79624 5.89762 6.38107 6.38811 6.42235 7.03707 7.10774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.391 5.391 3 C -0.062 4.062 4 C 0.594 3.406 5 O -0.576 6.576 6 N -0.685 5.685 7 C 0.117 3.883 8 H 0.091 0.909 9 C -0.153 4.153 10 C -0.106 4.106 11 H 0.125 0.875 12 C 0.112 3.888 13 N -0.701 5.701 14 C 0.704 3.296 15 O -0.589 6.589 16 N -0.679 5.679 17 C 0.529 3.471 18 O -0.495 6.495 19 C -0.115 4.115 20 C -0.087 4.087 21 C -0.195 4.195 22 Br 0.094 6.906 23 C 0.095 3.905 24 C -0.044 4.044 25 O -0.557 6.557 26 Si 0.621 3.379 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.419 0.581 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.170 0.830 34 H 0.452 0.548 35 H 0.436 0.564 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.193 0.807 39 H 0.110 0.890 40 H 0.402 0.598 41 H -0.254 1.254 42 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 -1.204 -2.399 5.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.063 5.063 3 C -0.176 4.176 4 C 0.382 3.618 5 O -0.457 6.457 6 N -0.336 5.336 7 C 0.012 3.988 8 H 0.109 0.891 9 C -0.192 4.192 10 C -0.125 4.125 11 H 0.143 0.857 12 C 0.003 3.997 13 N -0.367 5.367 14 C 0.403 3.597 15 O -0.466 6.466 16 N -0.349 5.349 17 C 0.317 3.683 18 O -0.366 6.366 19 C -0.153 4.153 20 C -0.114 4.114 21 C -0.281 4.281 22 Br 0.177 6.823 23 C -0.028 4.028 24 C -0.154 4.154 25 O -0.367 6.367 26 Si 0.523 3.477 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.257 0.743 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.187 0.813 34 H 0.300 0.700 35 H 0.279 0.721 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.210 0.790 39 H 0.128 0.872 40 H 0.254 0.746 41 H -0.179 1.179 42 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges 4.267 -1.221 -2.753 5.223 hybrid contribution -1.684 -0.145 0.224 1.705 sum 2.583 -1.366 -2.530 3.865 Atomic orbital electron populations 1.22337 0.74422 1.05353 1.04283 1.43921 1.07816 1.04041 1.50499 1.20192 0.90415 0.87797 1.19202 1.16946 0.85433 0.83748 0.75675 1.90798 1.17882 1.85022 1.52033 1.45169 1.10047 1.05062 1.73316 1.21901 0.99925 0.79505 0.97497 0.89124 1.23596 0.97321 1.00308 0.97943 1.22962 0.97889 0.92807 0.98876 0.85739 1.22151 0.87504 0.93541 0.96475 1.45502 1.28542 1.47507 1.15114 1.15961 0.81085 0.80306 0.82366 1.91076 1.41610 1.39328 1.74539 1.44374 1.25248 1.45320 1.19937 1.21202 0.82587 0.76459 0.88086 1.90874 1.22618 1.48183 1.74925 1.23362 0.97075 0.99751 0.95110 1.21521 0.95617 0.92361 1.01895 1.20631 0.90301 0.95177 1.21954 1.96303 1.32393 1.56269 1.97316 1.20047 0.89441 0.88481 1.04864 1.24321 0.93569 0.94667 1.02879 1.86449 1.34347 1.36429 1.79514 0.92910 0.93641 0.77915 0.83260 0.90641 0.88105 0.88665 0.74282 0.92319 0.88518 0.81334 0.70030 0.72143 0.86258 0.87861 0.79018 0.87244 0.74594 1.17859 1.22137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 9.39 127.77 1.20 1.48 16 2 N -0.39 -1.85 3.16 -519.62 -1.64 -3.49 16 3 C -0.06 -0.16 6.88 40.35 0.28 0.12 16 4 C 0.59 1.71 7.77 86.44 0.67 2.38 16 5 O -0.58 -5.87 14.21 -4.32 -0.06 -5.93 16 6 N -0.68 3.70 5.25 -443.71 -2.33 1.37 16 7 C 0.12 -0.81 4.29 45.58 0.20 -0.61 16 8 H 0.09 -0.21 7.53 -2.38 -0.02 -0.23 16 9 C -0.15 1.05 7.26 31.18 0.23 1.27 16 10 C -0.11 1.30 3.52 -10.27 -0.04 1.26 16 11 H 0.12 -1.60 8.14 -2.38 -0.02 -1.62 16 12 C 0.11 -1.27 3.71 44.37 0.16 -1.11 16 13 N -0.70 6.36 4.45 -459.62 -2.04 4.31 16 14 C 0.70 -0.37 8.99 179.44 1.61 1.24 16 15 O -0.59 -5.51 18.04 -3.84 -0.07 -5.58 16 16 N -0.68 2.09 5.70 -441.12 -2.52 -0.42 16 17 C 0.53 -2.10 8.14 87.94 0.72 -1.38 16 18 O -0.50 -1.34 18.02 -2.89 -0.05 -1.39 16 19 C -0.12 1.67 7.36 31.12 0.23 1.90 16 20 C -0.09 0.18 10.34 22.58 0.23 0.41 16 21 C -0.20 -0.12 6.16 22.04 0.14 0.01 16 22 Br 0.09 -0.24 28.24 -20.37 -0.58 -0.82 16 23 C 0.09 0.31 6.18 41.34 0.26 0.56 16 24 C -0.04 -0.02 2.89 71.24 0.21 0.19 16 25 O -0.56 -0.29 10.46 -148.98 -1.56 -1.85 16 26 Si 0.62 1.35 27.10 68.60 1.86 3.20 16 27 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.10 0.11 7.08 -2.39 -0.02 0.09 16 29 H 0.09 0.57 6.00 -2.39 -0.01 0.56 16 30 H 0.42 -4.75 7.60 -92.71 -0.70 -5.45 16 31 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.10 -0.58 6.69 -2.39 -0.02 -0.59 16 33 H 0.17 -2.87 8.14 -2.39 -0.02 -2.89 16 34 H 0.45 -5.80 8.91 -92.70 -0.83 -6.63 16 35 H 0.44 -1.93 8.96 -92.71 -0.83 -2.76 16 36 H 0.12 -2.08 8.05 -2.39 -0.02 -2.10 16 37 H 0.10 -1.70 8.14 -2.39 -0.02 -1.72 16 38 H 0.19 -1.92 7.45 -2.91 -0.02 -1.94 16 39 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 40 H 0.40 -2.88 8.74 -74.06 -0.65 -3.53 16 41 H -0.25 -1.22 7.11 99.48 0.71 -0.52 16 42 H -0.29 -3.14 7.11 99.48 0.71 -2.43 16 Total: 0.00 -30.22 367.41 -4.72 -34.94 By element: Atomic # 1 Polarization: -30.25 SS G_CDS: -1.82 Total: -32.07 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.09 Total: 7.73 kcal Atomic # 7 Polarization: 10.30 SS G_CDS: -8.53 Total: 1.76 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.74 Total: -14.75 kcal Atomic # 14 Polarization: 1.35 SS G_CDS: 1.86 Total: 3.20 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -0.58 Total: -0.82 kcal Total: -30.22 -4.72 -34.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_5000100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.353 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds