Wall clock time and date at job start Sun Mar 7 2021 08:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.38235 * 119.94415 * 300.00129 * 4 2 1 6 6 C 1.38189 * 120.07286 * 179.97438 * 5 4 2 7 7 C 1.38669 * 119.95455 * 0.02562 * 6 5 4 8 8 O 1.35919 * 120.05899 * 180.02562 * 7 6 5 9 9 C 1.42909 * 116.99970 * 0.02562 * 8 7 6 10 10 C 1.50699 * 109.46902 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00525 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99716 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99955 * 180.02562 * 12 10 9 14 14 H 1.08993 * 112.84911 * 334.66842 * 13 12 10 15 15 C 1.53777 * 113.61300 * 105.86561 * 13 12 10 16 16 C 1.54056 * 86.98739 * 89.16380 * 15 13 12 17 17 H 1.09001 * 113.60518 * 270.88321 * 16 15 13 18 18 C 1.52993 * 113.69721 * 139.99102 * 16 15 13 19 19 N 1.47316 * 110.60019 * 198.93367 * 18 16 15 20 20 C 1.34859 * 106.43833 * 241.52110 * 19 18 16 21 21 O 1.21541 * 123.72656 * 179.97438 * 20 19 18 22 22 N 1.33793 * 112.50661 * 359.86484 * 20 19 18 23 23 C 1.34771 * 111.63782 * 0.08766 * 22 20 19 24 24 O 1.21238 * 127.15235 * 180.02562 * 23 22 20 25 25 C 1.53779 * 113.61409 * 203.47281 * 13 12 10 26 26 C 1.38835 * 119.88506 * 359.97438 * 7 6 5 27 27 Br 1.89105 * 120.03568 * 180.02562 * 26 7 6 28 28 C 1.38192 * 119.92314 * 359.72386 * 26 7 6 29 29 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 30 30 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 31 31 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 32 32 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 33 33 H 1.08001 * 119.96447 * 359.97438 * 5 4 2 34 34 H 1.08007 * 120.02108 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.46757 * 300.00180 * 9 8 7 36 36 H 1.08999 * 109.46934 * 59.99829 * 9 8 7 37 37 H 0.97004 * 120.00085 * 0.02562 * 12 10 9 38 38 H 1.09005 * 113.61735 * 203.66567 * 15 13 12 39 39 H 1.09000 * 113.61631 * 334.56685 * 15 13 12 40 40 H 1.08996 * 110.53691 * 321.76562 * 18 16 15 41 41 H 0.96995 * 126.68548 * 61.43821 * 19 18 16 42 42 H 0.96991 * 124.17941 * 180.02562 * 22 20 19 43 43 H 1.09001 * 113.61591 * 25.43314 * 25 13 12 44 44 H 1.08998 * 113.61775 * 156.33917 * 25 13 12 45 45 H 1.08004 * 119.97629 * 180.27666 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5966 -2.0339 -1.4480 6 6 2.0554 -2.6878 -2.5756 7 6 2.8527 -2.0156 -3.4895 8 8 3.3047 -2.6566 -4.5996 9 6 2.9191 -4.0230 -4.7620 10 6 3.5086 -4.5629 -6.0395 11 8 4.1921 -3.8481 -6.7416 12 7 3.2771 -5.8403 -6.4014 13 6 3.8507 -6.3653 -7.6430 14 1 4.0507 -5.5869 -8.3792 15 6 5.0350 -7.3203 -7.4189 16 6 3.9994 -8.4589 -7.3533 17 1 3.6133 -8.6406 -6.3503 18 6 4.4489 -9.7403 -8.0580 19 7 3.2916 -10.6026 -8.3537 20 6 3.4908 -11.7532 -7.6792 21 8 2.7183 -12.6913 -7.7020 22 7 4.6341 -11.7482 -6.9843 23 6 5.3011 -10.5866 -7.1334 24 8 6.3624 -10.2822 -6.6324 25 6 3.0852 -7.5708 -8.2138 26 6 3.1877 -0.6864 -3.2692 27 35 4.2743 0.2346 -4.5131 28 6 2.7211 -0.0354 -2.1431 29 1 -0.3934 0.4417 -0.7651 30 1 1.7923 -0.5139 0.8900 31 1 1.5879 2.4585 -1.2243 32 1 1.5615 2.4679 1.2085 33 1 0.9759 -2.5575 -0.7359 34 1 1.7930 -3.7218 -2.7450 35 1 3.2851 -4.6066 -3.9174 36 1 1.8321 -4.0909 -4.8067 37 1 2.7308 -6.4121 -5.8397 38 1 5.7073 -7.3904 -8.2741 39 1 5.5604 -7.1513 -6.4790 40 1 4.9937 -9.5032 -8.9718 41 1 2.5357 -10.3837 -8.9207 42 1 4.9441 -12.4886 -6.4399 43 1 2.0374 -7.6039 -7.9151 44 1 3.2253 -7.7093 -9.2858 45 1 2.9775 0.9999 -1.9731 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17522896_6201210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:21:42 Heat of formation + Delta-G solvation = -74.155066 kcal Electronic energy + Delta-G solvation = -33185.195146 eV Core-core repulsion = 28218.392288 eV Total energy + Delta-G solvation = -4966.802858 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 440.051 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.56805 -41.84214 -41.22077 -39.94604 -39.63948 -38.95565 -37.40894 -37.21816 -35.22646 -34.23176 -33.51401 -32.25586 -30.68877 -30.04249 -29.14491 -27.08734 -26.50410 -25.34732 -24.15212 -23.83041 -22.75883 -22.60784 -22.03883 -20.78002 -19.66323 -19.51860 -18.73697 -18.26517 -18.07981 -17.89778 -17.65829 -17.45239 -17.12690 -16.94408 -16.59541 -16.50127 -16.33646 -16.07823 -15.94087 -15.70070 -15.48356 -15.29186 -15.15812 -14.80999 -14.42437 -14.37470 -14.13524 -14.04433 -13.79821 -13.57789 -13.42985 -12.92083 -12.53939 -12.43481 -12.34403 -12.31626 -11.98347 -11.84771 -11.79210 -11.74761 -11.53311 -11.30991 -11.09363 -11.03644 -10.70619 -10.70334 -10.34447 -10.06014 -9.36234 -5.01992 -0.10512 -0.00522 0.40699 0.67356 1.19032 1.20262 1.22103 1.33459 1.53860 1.84348 1.90726 1.91154 2.28931 2.30107 2.62638 3.01711 3.23489 3.25838 3.26868 3.30232 3.40919 3.43821 3.58683 3.63172 3.63397 3.74122 3.79604 3.95546 3.96487 4.12649 4.22879 4.31811 4.36842 4.37252 4.50108 4.52266 4.57464 4.69601 4.74717 4.79244 4.86486 4.91262 5.18780 5.24512 5.33652 5.55105 5.72150 5.90637 6.15843 6.19747 6.30233 6.93908 6.96567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.067 4.067 3 Si 0.675 3.325 4 C -0.150 4.150 5 C -0.035 4.035 6 C -0.204 4.204 7 C 0.161 3.839 8 O -0.273 6.273 9 C 0.037 3.963 10 C 0.519 3.481 11 O -0.501 6.501 12 N -0.713 5.713 13 C 0.124 3.876 14 H 0.112 0.888 15 C -0.137 4.137 16 C -0.115 4.115 17 H 0.101 0.899 18 C 0.102 3.898 19 N -0.721 5.721 20 C 0.703 3.297 21 O -0.539 6.539 22 N -0.681 5.681 23 C 0.527 3.473 24 O -0.458 6.458 25 C -0.135 4.135 26 C -0.119 4.119 27 Br -0.023 7.023 28 C -0.049 4.049 29 H 0.377 0.623 30 H 0.122 0.878 31 H -0.256 1.256 32 H -0.252 1.252 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.402 0.598 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.443 0.557 42 H 0.435 0.565 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -1.534 0.237 2.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.177 4.177 3 Si 0.575 3.425 4 C -0.151 4.151 5 C -0.054 4.054 6 C -0.224 4.224 7 C 0.113 3.887 8 O -0.185 6.185 9 C -0.041 4.041 10 C 0.304 3.696 11 O -0.373 6.373 12 N -0.366 5.366 13 C 0.018 3.982 14 H 0.130 0.870 15 C -0.177 4.177 16 C -0.135 4.135 17 H 0.119 0.881 18 C -0.007 4.007 19 N -0.387 5.387 20 C 0.402 3.598 21 O -0.412 6.412 22 N -0.352 5.352 23 C 0.312 3.688 24 O -0.326 6.326 25 C -0.173 4.173 26 C -0.199 4.199 27 Br 0.063 6.937 28 C -0.068 4.068 29 H 0.225 0.775 30 H 0.140 0.860 31 H -0.180 1.180 32 H -0.177 1.177 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.237 0.763 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.150 0.850 41 H 0.287 0.713 42 H 0.277 0.723 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.656 -0.300 -0.150 0.737 hybrid contribution -1.869 -1.301 0.160 2.283 sum -2.525 -1.601 0.010 2.990 Atomic orbital electron populations 1.86602 1.17577 1.79929 1.49438 1.24906 0.83995 1.10799 0.97993 0.95049 0.91834 0.74712 0.80858 1.20201 1.01545 0.95423 0.97934 1.20945 0.95508 0.93298 0.95608 1.21282 1.03202 1.01284 0.96623 1.18625 0.92918 0.90780 0.86406 1.86280 1.69544 1.23767 1.38895 1.22535 1.01158 0.82831 0.97621 1.19941 0.81115 0.81939 0.86623 1.90820 1.36581 1.57117 1.52830 1.45461 1.54272 1.11977 1.24938 1.21807 0.93956 0.95804 0.86593 0.87029 1.23514 0.96440 0.93210 1.04500 1.22928 0.99239 0.91235 1.00056 0.88087 1.22168 0.87175 0.91602 0.99799 1.45596 1.25531 1.15148 1.52390 1.15959 0.81298 0.83773 0.78750 1.91103 1.47533 1.36516 1.66056 1.44363 1.22595 1.20075 1.48176 1.20793 0.85014 0.82157 0.80852 1.90894 1.19138 1.74488 1.48039 1.23356 0.99413 0.93786 1.00795 1.20992 1.06731 0.93224 0.98949 1.96820 1.65524 1.74670 1.56724 1.20862 0.95135 0.99578 0.91267 0.77524 0.86042 1.18044 1.17719 0.84458 0.84325 0.88388 0.88466 0.76301 0.87983 0.89899 0.85016 0.71258 0.72281 0.89880 0.87706 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.01 12.77 -35.23 -0.45 -0.44 16 2 C -0.07 0.09 2.82 36.01 0.10 0.19 16 3 Si 0.67 -0.88 29.78 -169.99 -5.06 -5.94 16 4 C -0.15 0.13 5.39 -104.60 -0.56 -0.43 16 5 C -0.04 0.05 9.60 -39.60 -0.38 -0.33 16 6 C -0.20 0.32 9.04 -39.44 -0.36 -0.03 16 7 C 0.16 0.12 6.68 -39.20 -0.26 -0.14 16 8 O -0.27 -0.42 9.01 -39.39 -0.35 -0.77 16 9 C 0.04 -0.10 5.22 36.01 0.19 0.09 16 10 C 0.52 -0.28 7.91 -10.99 -0.09 -0.36 16 11 O -0.50 -2.29 16.12 -14.35 -0.23 -2.52 16 12 N -0.71 2.84 5.26 -53.02 -0.28 2.56 16 13 C 0.12 -0.48 4.29 -67.12 -0.29 -0.77 16 14 H 0.11 -0.22 7.50 -51.93 -0.39 -0.61 16 15 C -0.14 0.55 7.46 -25.78 -0.19 0.36 16 16 C -0.11 0.64 3.28 -89.67 -0.29 0.35 16 17 H 0.10 -0.56 8.14 -51.93 -0.42 -0.98 16 18 C 0.10 -0.49 3.41 -68.21 -0.23 -0.73 16 19 N -0.72 3.10 6.14 -59.10 -0.36 2.74 16 20 C 0.70 -0.51 9.00 -87.72 -0.79 -1.30 16 21 O -0.54 -2.00 18.04 5.33 0.10 -1.90 16 22 N -0.68 1.42 5.70 -15.71 -0.09 1.33 16 23 C 0.53 -0.99 8.14 -10.55 -0.09 -1.07 16 24 O -0.46 -0.64 18.02 5.59 0.10 -0.54 16 25 C -0.14 0.88 7.25 -25.92 -0.19 0.69 16 26 C -0.12 -0.18 6.24 -39.38 -0.25 -0.43 16 27 Br -0.02 -0.06 33.16 -68.01 -2.26 -2.32 16 28 C -0.05 0.00 8.40 -39.58 -0.33 -0.33 16 29 H 0.38 -0.99 8.70 45.56 0.40 -0.59 16 30 H 0.12 -0.27 7.96 -51.93 -0.41 -0.69 16 31 H -0.26 -0.19 7.11 56.52 0.40 0.21 16 32 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 33 H 0.14 -0.36 8.06 -52.49 -0.42 -0.78 16 34 H 0.14 -0.62 6.30 -52.48 -0.33 -0.95 16 35 H 0.10 -0.50 7.66 -51.93 -0.40 -0.90 16 36 H 0.10 -0.50 7.66 -51.93 -0.40 -0.90 16 37 H 0.40 -2.78 8.70 -40.82 -0.36 -3.13 16 38 H 0.10 -0.46 8.01 -51.93 -0.42 -0.88 16 39 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 40 H 0.13 -0.85 8.02 -51.93 -0.42 -1.27 16 41 H 0.44 -2.67 8.96 -40.82 -0.37 -3.03 16 42 H 0.43 -1.36 8.96 -40.82 -0.37 -1.73 16 43 H 0.08 -0.57 8.14 -51.93 -0.42 -0.99 16 44 H 0.10 -0.78 8.10 -51.93 -0.42 -1.20 16 45 H 0.14 -0.18 4.87 -52.48 -0.26 -0.44 16 LS Contribution 406.27 15.07 6.12 6.12 Total: 0.00 -13.70 406.27 -11.79 -25.49 By element: Atomic # 1 Polarization: -14.53 SS G_CDS: -5.02 Total: -19.55 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -4.01 Total: -4.24 kcal Atomic # 7 Polarization: 7.35 SS G_CDS: -0.73 Total: 6.62 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.84 Total: -6.18 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.06 Total: -5.94 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -2.26 Total: -2.32 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -13.70 -11.79 -25.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_6201210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.667 kcal (2) G-P(sol) polarization free energy of solvation -13.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds