Wall clock time and date at job start Sun Mar 7 2021 08:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35964 * 116.99806 * 2 1 4 4 C 1.39451 * 120.11833 * 180.02562 * 3 2 1 5 5 O 1.34776 * 133.24407 * 0.33488 * 4 3 2 6 6 C 1.34922 * 110.84199 * 180.12402 * 5 4 3 7 7 C 1.46995 * 125.13936 * 179.85253 * 6 5 4 8 8 O 1.21653 * 119.99908 * 179.69180 * 7 6 5 9 9 N 1.34769 * 120.00015 * 359.68531 * 7 6 5 10 10 C 1.46501 * 120.00014 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.85074 * 336.20143 * 10 9 7 12 12 C 1.53782 * 113.61142 * 107.50467 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.18830 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.52999 * 113.66529 * 139.88900 * 13 12 10 16 16 N 1.47313 * 110.59829 * 196.72935 * 15 13 12 17 17 C 1.34529 * 106.61349 * 241.47540 * 16 15 13 18 18 O 1.21539 * 123.76898 * 179.97438 * 17 16 15 19 19 N 1.33786 * 112.46190 * 359.97438 * 17 16 15 20 20 C 1.34774 * 111.64478 * 0.02562 * 19 17 16 21 21 O 1.21232 * 127.15661 * 180.02562 * 20 19 17 22 22 C 1.53781 * 113.61619 * 205.00312 * 10 9 7 23 23 C 1.35810 * 109.72132 * 359.57873 * 6 5 4 24 24 C 1.40608 * 119.13494 * 180.02562 * 4 3 2 25 25 C 1.39784 * 120.12094 * 359.97438 * 24 4 3 26 26 C 1.50696 * 120.09124 * 179.97438 * 25 24 4 27 27 O 1.42902 * 109.47006 * 75.00317 * 26 25 24 28 28 Si 1.86305 * 109.47031 * 194.99769 * 26 25 24 29 29 C 1.36633 * 119.80920 * 359.97438 * 25 24 4 30 30 C 1.38256 * 120.12405 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46512 * 299.99916 * 1 2 3 33 33 H 1.09001 * 109.46861 * 59.99694 * 1 2 3 34 34 H 0.97001 * 120.00013 * 0.02562 * 9 7 6 35 35 H 1.08997 * 113.61668 * 203.66381 * 12 10 9 36 36 H 1.08998 * 113.61674 * 334.48890 * 12 10 9 37 37 H 1.09007 * 110.53881 * 319.72104 * 15 13 12 38 38 H 0.96992 * 126.69559 * 61.44649 * 16 15 13 39 39 H 0.97004 * 124.17936 * 180.02562 * 19 17 16 40 40 H 1.09002 * 113.61445 * 25.43587 * 22 10 9 41 41 H 1.09002 * 113.61408 * 156.25317 * 22 10 9 42 42 H 1.08004 * 126.96137 * 180.22313 * 23 6 5 43 43 H 1.08997 * 109.47403 * 314.99945 * 26 25 24 44 44 H 0.96699 * 114.00386 * 59.99337 * 27 26 25 45 45 H 1.48495 * 109.99651 * 58.67995 * 28 26 25 46 46 H 1.48492 * 109.99968 * 180.02562 * 28 26 25 47 47 H 1.08003 * 119.74578 * 179.97438 * 29 25 24 48 48 H 1.08006 * 119.66207 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2874 -0.0005 5 8 4.4142 0.3573 -0.0069 6 6 5.6317 0.9386 -0.0015 7 6 6.9131 0.2184 -0.0029 8 8 7.9596 0.8388 -0.0033 9 7 6.9287 -1.1292 -0.0036 10 6 8.2058 -1.8470 -0.0055 11 1 9.0246 -1.2530 -0.4116 12 6 8.5367 -2.5189 1.3376 13 6 7.7823 -3.7555 0.8160 14 1 6.7162 -3.7442 1.0423 15 6 8.4538 -5.0821 1.1770 16 7 7.9302 -6.1734 0.3373 17 6 7.3549 -7.0583 1.1714 18 8 6.8198 -8.0852 0.8024 19 7 7.4376 -6.6816 2.4525 20 6 8.0796 -5.5039 2.5840 21 8 8.3104 -4.9067 3.6134 22 6 8.1164 -3.2617 -0.6016 23 6 5.4945 2.2898 -0.0007 24 6 4.0554 2.5510 0.0000 25 6 3.2765 3.7117 0.0006 26 6 3.9382 5.0656 0.0017 27 8 4.4610 5.3414 -1.2993 28 14 2.6863 6.3682 0.4568 29 6 1.9136 3.6151 0.0000 30 6 1.2958 2.3726 0.0005 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 6.0943 -1.6239 -0.0035 35 1 9.6024 -2.6910 1.4889 36 1 8.0592 -2.0424 2.1937 37 1 9.5363 -5.0028 1.0757 38 1 7.9885 -6.2406 -0.6285 39 1 7.0797 -7.1930 3.1951 40 1 7.2983 -3.3857 -1.3112 41 1 9.0669 -3.6362 -0.9818 42 1 6.2874 3.0231 -0.0002 43 1 4.7503 5.0726 0.7287 44 1 3.7925 5.3511 -1.9979 45 1 2.1117 6.0750 1.7943 46 1 3.3262 7.7082 0.4609 47 1 1.3128 4.5126 0.0009 48 1 0.2174 2.3120 0.0005 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_6672420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:21:52 Heat of formation + Delta-G solvation = -82.550656 kcal Electronic energy + Delta-G solvation = -37422.515135 eV Core-core repulsion = 32220.031747 eV Total energy + Delta-G solvation = -5202.483388 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.140 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.79878 -43.46648 -41.36833 -40.61926 -39.83490 -39.38377 -39.08215 -37.26471 -37.01132 -35.18209 -34.13177 -33.68858 -31.93742 -31.06642 -29.55336 -28.52174 -26.75925 -26.39507 -25.82217 -24.53824 -24.02001 -23.70954 -22.57299 -22.17995 -21.80658 -20.55621 -19.90441 -19.42716 -19.06127 -18.55320 -17.95746 -17.86041 -17.79623 -17.70215 -17.26108 -16.97496 -16.92558 -16.63720 -16.47906 -16.23549 -16.15655 -15.89941 -15.77816 -15.62801 -15.44465 -15.14380 -14.75174 -14.56843 -14.50000 -14.20330 -14.11932 -13.59370 -13.57991 -13.42094 -13.38506 -13.28655 -12.67648 -12.42677 -12.37291 -12.30471 -12.10150 -11.92223 -11.91056 -11.66329 -11.54334 -11.51057 -11.20775 -11.05097 -10.52393 -10.45308 -10.33130 -9.85715 -9.02841 -5.00820 -0.71317 0.07868 0.49293 0.57166 1.13333 1.29656 1.38470 1.67687 1.82437 1.84215 1.90576 1.99893 2.11787 2.12899 2.37855 2.81555 3.13533 3.31259 3.40142 3.55336 3.58553 3.61242 3.67400 3.73308 3.79211 3.85017 3.95432 3.95767 4.15533 4.25649 4.31996 4.34866 4.39751 4.41761 4.43619 4.59686 4.75562 4.76683 4.78211 4.80689 4.84666 4.85578 4.99830 5.02318 5.02464 5.03680 5.19511 5.29649 5.43162 5.56103 5.77925 5.84889 6.14253 6.25836 6.34106 6.76801 6.78428 7.07930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.136 3.864 4 C 0.020 3.980 5 O -0.181 6.181 6 C -0.034 4.034 7 C 0.606 3.394 8 O -0.541 6.541 9 N -0.688 5.688 10 C 0.107 3.893 11 H 0.105 0.895 12 C -0.136 4.136 13 C -0.110 4.110 14 H 0.096 0.904 15 C 0.113 3.887 16 N -0.699 5.699 17 C 0.703 3.297 18 O -0.587 6.587 19 N -0.678 5.678 20 C 0.526 3.474 21 O -0.493 6.493 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.099 4.099 25 C -0.108 4.108 26 C -0.080 4.080 27 O -0.554 6.554 28 Si 0.795 3.205 29 C -0.079 4.079 30 C -0.165 4.165 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.415 0.585 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.165 0.835 38 H 0.454 0.546 39 H 0.437 0.563 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.170 0.830 43 H 0.097 0.903 44 H 0.396 0.604 45 H -0.281 1.281 46 H -0.301 1.301 47 H 0.176 0.824 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 1.248 -4.417 7.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.090 3.910 4 C -0.028 4.028 5 O -0.083 6.083 6 C -0.085 4.085 7 C 0.391 3.609 8 O -0.420 6.420 9 N -0.338 5.338 10 C 0.002 3.998 11 H 0.123 0.877 12 C -0.176 4.176 13 C -0.130 4.130 14 H 0.114 0.886 15 C 0.004 3.996 16 N -0.364 5.364 17 C 0.402 3.598 18 O -0.464 6.464 19 N -0.349 5.349 20 C 0.313 3.687 21 O -0.364 6.364 22 C -0.153 4.153 23 C -0.136 4.136 24 C -0.100 4.100 25 C -0.109 4.109 26 C -0.188 4.188 27 O -0.362 6.362 28 Si 0.700 3.300 29 C -0.096 4.096 30 C -0.183 4.183 31 H 0.132 0.868 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.252 0.748 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.182 0.818 38 H 0.301 0.699 39 H 0.279 0.721 40 H 0.110 0.890 41 H 0.151 0.849 42 H 0.187 0.813 43 H 0.115 0.885 44 H 0.246 0.754 45 H -0.207 1.207 46 H -0.229 1.229 47 H 0.193 0.807 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.265 1.631 -3.236 6.392 hybrid contribution -0.028 -0.886 0.587 1.063 sum -5.293 0.745 -2.650 5.966 Atomic orbital electron populations 1.23494 0.75264 1.05982 1.03270 1.86144 1.24364 1.25867 1.88468 1.18005 0.86063 0.86935 1.00037 1.19228 0.88298 0.87073 1.08242 1.84002 1.12706 1.35060 1.76543 1.21968 0.84127 0.92716 1.09640 1.16616 0.84879 0.82835 0.76533 1.90898 1.31284 1.68219 1.51634 1.45547 1.10847 1.04696 1.72718 1.22099 0.85678 0.93779 0.98242 0.87664 1.23507 1.02696 0.94483 0.96866 1.22842 1.00440 0.90568 0.99113 0.88621 1.22275 1.03517 0.88327 0.85450 1.45442 1.59757 1.20933 1.10239 1.15986 0.78975 0.83377 0.81487 1.91072 1.49739 1.26740 1.78808 1.44378 1.55709 1.24397 1.10377 1.21214 0.75671 0.79768 0.92032 1.90877 1.53256 1.57728 1.34502 1.23365 1.05639 0.91607 0.94737 1.22856 0.95444 0.94509 1.00775 1.19603 0.92339 0.92937 1.05110 1.19690 0.93782 0.93939 1.03471 1.25346 1.05815 0.98567 0.89091 1.86503 1.39664 1.93327 1.16746 0.93851 0.80348 0.73165 0.82672 1.20798 0.92445 0.98618 0.97735 1.21433 1.01989 0.89539 1.05387 0.86793 0.90728 0.90323 0.74764 0.86343 0.92157 0.81797 0.69900 0.72057 0.89028 0.84900 0.81283 0.88522 0.75417 1.20743 1.22891 0.80742 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.66 10.50 -93.15 -0.98 -1.64 16 3 C 0.14 0.33 6.70 22.57 0.15 0.48 16 4 C 0.02 0.14 7.35 23.14 0.17 0.31 16 5 O -0.18 -1.41 10.28 -13.34 -0.14 -1.55 16 6 C -0.03 -0.27 7.07 24.00 0.17 -0.10 16 7 C 0.61 4.17 7.80 86.54 0.67 4.84 16 8 O -0.54 -6.97 16.42 -4.20 -0.07 -7.04 16 9 N -0.69 0.31 5.26 -443.71 -2.33 -2.02 16 10 C 0.11 -0.49 4.32 45.52 0.20 -0.29 16 11 H 0.11 -0.21 7.46 -2.38 -0.02 -0.23 16 12 C -0.14 0.76 7.45 31.18 0.23 0.99 16 13 C -0.11 0.99 3.28 -10.20 -0.03 0.95 16 14 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 15 C 0.11 -1.02 3.39 44.37 0.15 -0.87 16 16 N -0.70 5.54 6.15 -459.61 -2.83 2.72 16 17 C 0.70 0.26 8.99 179.44 1.61 1.88 16 18 O -0.59 -5.72 18.04 -3.84 -0.07 -5.79 16 19 N -0.68 1.26 5.70 -441.12 -2.52 -1.25 16 20 C 0.53 -0.92 8.14 87.94 0.72 -0.21 16 21 O -0.49 -2.66 18.02 -2.88 -0.05 -2.71 16 22 C -0.12 1.36 7.29 31.12 0.23 1.59 16 23 C -0.12 -0.95 10.68 23.79 0.25 -0.69 16 24 C -0.10 -0.62 6.16 -20.24 -0.12 -0.74 16 25 C -0.11 -0.10 5.26 -19.87 -0.10 -0.20 16 26 C -0.08 -0.01 2.71 71.23 0.19 0.19 16 27 O -0.55 -0.54 12.88 -148.98 -1.92 -2.46 16 28 Si 0.80 -3.20 29.93 68.60 2.05 -1.15 16 29 C -0.08 0.37 8.62 22.02 0.19 0.56 16 30 C -0.17 0.71 9.03 22.40 0.20 0.91 16 31 H 0.11 -1.09 8.14 -2.39 -0.02 -1.11 16 32 H 0.07 -0.77 7.66 -2.39 -0.02 -0.79 16 33 H 0.08 -0.86 7.66 -2.39 -0.02 -0.88 16 34 H 0.42 -1.37 8.42 -92.71 -0.78 -2.15 16 35 H 0.12 -1.00 8.03 -2.39 -0.02 -1.02 16 36 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.17 -2.36 8.05 -2.38 -0.02 -2.38 16 38 H 0.45 -5.49 8.96 -92.71 -0.83 -6.32 16 39 H 0.44 -1.52 8.96 -92.71 -0.83 -2.35 16 40 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 41 H 0.13 -2.18 8.10 -2.39 -0.02 -2.20 16 42 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.10 0.28 7.96 -2.39 -0.02 0.26 16 44 H 0.40 -3.17 8.70 -74.06 -0.64 -3.81 16 45 H -0.28 -0.11 7.11 99.48 0.71 0.60 16 46 H -0.30 -1.25 7.11 99.48 0.71 -0.54 16 47 H 0.18 -2.13 5.07 -2.91 -0.01 -2.15 16 48 H 0.18 -2.14 6.26 -2.91 -0.02 -2.15 16 Total: 0.00 -35.26 413.39 -4.80 -40.05 By element: Atomic # 1 Polarization: -25.83 SS G_CDS: -1.94 Total: -27.77 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.99 Total: 10.60 kcal Atomic # 7 Polarization: 7.12 SS G_CDS: -7.68 Total: -0.56 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -3.22 Total: -21.18 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: 2.05 Total: -1.15 kcal Total: -35.26 -4.80 -40.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_6672420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.497 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds