Wall clock time and date at job start Sun Mar 7 2021 08:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33811 * 122.45501 * 2 1 4 4 C 1.50697 * 124.52252 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47303 * 246.67336 * 4 3 2 6 6 Si 1.86296 * 109.47322 * 126.67086 * 4 3 2 7 7 S 1.70616 * 110.95605 * 179.78778 * 3 2 1 8 8 C 1.75831 * 91.56285 * 0.30510 * 7 3 2 9 9 C 1.46585 * 125.45792 * 179.97438 * 8 7 3 10 10 O 1.21701 * 119.99881 * 179.69523 * 9 8 7 11 11 N 1.34782 * 119.99573 * 359.69026 * 9 8 7 12 12 C 1.46504 * 119.99373 * 179.97438 * 11 9 8 13 13 H 1.09006 * 112.85066 * 23.81185 * 12 11 9 14 14 C 1.53780 * 113.61198 * 154.99993 * 12 11 9 15 15 C 1.53784 * 87.07800 * 89.20162 * 14 12 11 16 16 H 1.09003 * 113.61141 * 270.88020 * 15 14 12 17 17 C 1.52996 * 113.61146 * 139.98247 * 15 14 12 18 18 N 1.47312 * 110.60265 * 294.17175 * 17 15 14 19 19 C 1.34530 * 106.62165 * 241.47931 * 18 17 15 20 20 O 1.21537 * 123.76976 * 180.02562 * 19 18 17 21 21 N 1.33789 * 112.45573 * 359.97438 * 19 18 17 22 22 C 1.34774 * 111.64829 * 0.02562 * 21 19 18 23 23 O 1.21226 * 127.15974 * 179.97438 * 22 21 19 24 24 C 1.53769 * 113.69244 * 252.53467 * 12 11 9 25 25 C 1.36645 * 109.08202 * 359.69751 * 8 7 3 26 26 H 1.09002 * 109.47150 * 275.07976 * 1 2 3 27 27 H 1.08999 * 109.46699 * 35.07271 * 1 2 3 28 28 H 1.08993 * 109.47543 * 155.07105 * 1 2 3 29 29 H 1.09003 * 109.47016 * 6.67201 * 4 3 2 30 30 H 0.96694 * 113.99707 * 299.99458 * 5 4 3 31 31 H 1.48497 * 110.00102 * 58.68167 * 6 4 3 32 32 H 1.48502 * 110.00473 * 180.02562 * 6 4 3 33 33 H 0.96996 * 120.00304 * 0.02562 * 11 9 8 34 34 H 1.09000 * 113.61538 * 203.75149 * 14 12 11 35 35 H 1.09004 * 113.61646 * 334.65763 * 14 12 11 36 36 H 1.09002 * 110.53850 * 57.17229 * 17 15 14 37 37 H 0.96999 * 126.68676 * 61.44776 * 18 17 15 38 38 H 0.97002 * 124.17867 * 180.02562 * 21 19 18 39 39 H 1.09003 * 113.61980 * 25.42687 * 24 12 11 40 40 H 1.09004 * 113.61542 * 156.32686 * 24 12 11 41 41 H 1.08001 * 123.35258 * 180.20466 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1291 0.0000 4 6 1.6357 2.5161 0.0006 5 8 1.9399 3.1634 -1.2366 6 14 2.3588 3.4975 1.4093 7 16 3.8970 0.7890 0.0059 8 6 3.5936 -0.9429 -0.0010 9 6 4.6230 -1.9865 -0.0006 10 8 4.2999 -3.1599 0.0000 11 7 5.9272 -1.6465 -0.0009 12 6 6.9560 -2.6896 0.0001 13 1 6.5989 -3.6367 -0.4046 14 6 8.2977 -2.2320 -0.5958 15 6 8.6832 -1.7788 0.8223 16 1 8.3904 -0.7533 1.0477 17 6 10.1392 -2.0761 1.1861 18 7 10.3708 -3.5294 1.2516 19 6 10.7474 -3.8026 2.5139 20 8 11.0182 -4.9186 2.9116 21 7 10.7914 -2.7082 3.2823 22 6 10.4448 -1.6028 2.5934 23 8 10.3889 -0.4666 3.0122 24 6 7.6907 -2.8315 1.3434 25 6 2.2445 -1.1602 -0.0005 26 1 -0.3633 0.0910 1.0236 27 1 -0.3633 0.8411 -0.5905 28 1 -0.3634 -0.9318 -0.4331 29 1 0.5542 2.4512 0.1204 30 1 2.8868 3.2559 -1.4096 31 1 3.8360 3.5663 1.2748 32 1 1.7851 4.8672 1.4213 33 1 6.1847 -0.7114 -0.0010 34 1 8.9096 -3.0509 -0.9739 35 1 8.2026 -1.4104 -1.3059 36 1 10.8153 -1.6096 0.4696 37 1 10.2708 -4.1655 0.5262 38 1 11.0417 -2.7100 4.2194 39 1 7.1057 -2.4942 2.1990 40 1 8.1367 -3.8145 1.4955 41 1 1.8017 -2.1452 -0.0009 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:21:57 Heat of formation + Delta-G solvation = -51.822702 kcal Electronic energy + Delta-G solvation = -28292.723693 eV Core-core repulsion = 24074.541681 eV Total energy + Delta-G solvation = -4218.182013 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.097 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.55929 -41.35000 -40.07696 -39.74185 -39.25864 -37.70051 -37.17987 -35.15638 -33.98535 -32.39182 -29.84576 -29.72249 -27.02026 -26.81908 -25.15130 -24.29141 -23.71999 -22.55041 -22.05242 -20.58424 -20.11476 -19.55794 -19.27625 -18.12301 -17.89774 -17.68419 -17.49600 -17.16574 -16.89600 -16.68443 -16.28477 -16.12339 -15.84868 -15.63452 -15.46261 -15.38811 -15.11797 -14.82578 -14.65523 -14.38318 -14.04194 -13.56050 -13.45782 -13.29042 -13.16679 -13.00554 -12.59961 -12.44262 -12.35001 -12.30218 -11.85721 -11.79685 -11.52428 -11.49838 -11.33717 -11.21819 -10.95013 -10.49002 -10.30395 -9.73457 -9.45007 -4.99978 -0.71560 0.26373 0.51345 0.66915 1.08028 1.24974 1.41182 1.50824 1.87523 1.89971 1.92444 2.01451 2.14382 2.88088 3.26110 3.33793 3.42414 3.49910 3.56547 3.63185 3.75698 4.07791 4.14635 4.18561 4.22715 4.38044 4.44076 4.51513 4.59725 4.70947 4.73222 4.82375 4.86093 4.88709 4.96465 5.00413 5.01352 5.06901 5.30215 5.40153 5.46047 5.77178 5.86651 6.26377 6.32007 6.35410 6.95962 7.08315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.100 4.100 3 C -0.230 4.230 4 C -0.048 4.048 5 O -0.539 6.539 6 Si 0.735 3.265 7 S 0.228 5.772 8 C -0.280 4.280 9 C 0.593 3.407 10 O -0.567 6.567 11 N -0.698 5.698 12 C 0.112 3.888 13 H 0.093 0.907 14 C -0.116 4.116 15 C -0.107 4.107 16 H 0.122 0.878 17 C 0.112 3.888 18 N -0.701 5.701 19 C 0.704 3.296 20 O -0.587 6.587 21 N -0.678 5.678 22 C 0.530 3.470 23 O -0.496 6.496 24 C -0.153 4.153 25 C -0.053 4.053 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.385 0.615 31 H -0.256 1.256 32 H -0.280 1.280 33 H 0.410 0.590 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.170 0.830 37 H 0.453 0.547 38 H 0.436 0.564 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 4.359 -2.410 5.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C -0.350 4.350 4 C -0.159 4.159 5 O -0.347 6.347 6 Si 0.636 3.364 7 S 0.497 5.503 8 C -0.400 4.400 9 C 0.380 3.620 10 O -0.447 6.447 11 N -0.349 5.349 12 C 0.007 3.993 13 H 0.112 0.888 14 C -0.154 4.154 15 C -0.127 4.127 16 H 0.140 0.860 17 C 0.004 3.996 18 N -0.367 5.367 19 C 0.403 3.597 20 O -0.464 6.464 21 N -0.348 5.348 22 C 0.317 3.683 23 O -0.366 6.366 24 C -0.192 4.192 25 C -0.087 4.087 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.158 0.842 30 H 0.234 0.766 31 H -0.181 1.181 32 H -0.206 1.206 33 H 0.247 0.753 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.187 0.813 37 H 0.300 0.700 38 H 0.279 0.721 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.613 5.217 -1.884 5.776 hybrid contribution -0.666 -0.893 -0.561 1.248 sum 0.947 4.323 -2.446 5.056 Atomic orbital electron populations 1.20686 0.87812 1.03668 1.03949 1.18814 0.99116 0.90312 1.03001 1.24549 0.98868 1.01007 1.10578 1.24771 1.06542 0.89452 0.95090 1.86655 1.30601 1.79749 1.37722 0.93904 0.79074 0.79089 0.84323 1.82642 1.02912 0.96520 1.68206 1.24470 0.97864 0.97786 1.19902 1.17143 0.82489 0.87030 0.75319 1.90841 1.82274 1.19903 1.51698 1.45444 1.04332 1.10572 1.74543 1.21899 0.87825 0.91980 0.97608 0.88849 1.23365 0.93400 1.03473 0.95117 1.22944 0.90036 1.01207 0.98464 0.86002 1.22118 1.00756 0.81498 0.95249 1.45495 1.70954 1.09567 1.10660 1.15954 0.77713 0.83358 0.82657 1.91078 1.55902 1.22743 1.76632 1.44369 1.64831 1.09134 1.16483 1.21175 0.73990 0.83897 0.89246 1.90868 1.50037 1.19670 1.76072 1.23565 0.97512 1.00529 0.97591 1.20827 0.91225 1.00417 0.96241 0.88976 0.90666 0.90871 0.84230 0.76607 1.18085 1.20563 0.75305 0.86035 0.88127 0.81320 0.69993 0.72074 0.92205 0.88352 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.44 9.48 71.24 0.68 1.11 16 2 C -0.10 0.07 5.78 -21.05 -0.12 -0.05 16 3 C -0.23 0.48 4.83 24.68 0.12 0.60 16 4 C -0.05 0.16 2.77 71.23 0.20 0.36 16 5 O -0.54 0.25 12.88 -148.98 -1.92 -1.67 16 6 Si 0.74 -3.22 32.12 68.60 2.20 -1.01 16 7 S 0.23 -0.81 20.82 -56.49 -1.18 -1.98 16 8 C -0.28 -0.53 6.45 24.08 0.16 -0.38 16 9 C 0.59 2.66 7.78 86.42 0.67 3.33 16 10 O -0.57 -7.23 16.44 -4.35 -0.07 -7.30 16 11 N -0.70 2.06 5.26 -444.08 -2.34 -0.27 16 12 C 0.11 -0.56 4.32 45.51 0.20 -0.37 16 13 H 0.09 -0.06 7.46 -2.38 -0.02 -0.08 16 14 C -0.12 1.50 7.32 31.12 0.23 1.73 16 15 C -0.11 1.17 3.52 -10.27 -0.04 1.13 16 16 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 17 C 0.11 -1.19 3.70 44.37 0.16 -1.03 16 18 N -0.70 6.05 4.45 -459.60 -2.05 4.00 16 19 C 0.70 -0.18 8.92 179.44 1.60 1.42 16 20 O -0.59 -5.56 18.04 -3.83 -0.07 -5.63 16 21 N -0.68 1.88 5.70 -441.12 -2.52 -0.64 16 22 C 0.53 -1.79 8.14 87.94 0.72 -1.07 16 23 O -0.50 -1.64 18.02 -2.86 -0.05 -1.69 16 24 C -0.15 0.85 7.27 31.11 0.23 1.07 16 25 C -0.05 -0.12 9.78 21.72 0.21 0.09 16 26 H 0.09 -0.66 8.14 -2.39 -0.02 -0.67 16 27 H 0.07 -0.35 6.99 -2.39 -0.02 -0.36 16 28 H 0.07 -0.31 8.10 -2.39 -0.02 -0.33 16 29 H 0.14 -0.74 6.25 -2.39 -0.01 -0.76 16 30 H 0.38 -2.40 8.70 -74.06 -0.64 -3.04 16 31 H -0.26 0.58 7.11 99.48 0.71 1.28 16 32 H -0.28 -0.65 7.11 99.48 0.71 0.05 16 33 H 0.41 -3.20 7.82 -92.71 -0.72 -3.92 16 34 H 0.12 -2.00 7.69 -2.39 -0.02 -2.01 16 35 H 0.10 -1.49 8.14 -2.38 -0.02 -1.51 16 36 H 0.17 -2.76 8.14 -2.39 -0.02 -2.78 16 37 H 0.45 -5.65 8.65 -92.71 -0.80 -6.45 16 38 H 0.44 -1.85 8.96 -92.71 -0.83 -2.68 16 39 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.10 -0.48 6.71 -2.38 -0.02 -0.50 16 41 H 0.15 0.44 8.06 -2.91 -0.02 0.42 16 Total: 0.00 -28.30 364.12 -4.79 -33.09 By element: Atomic # 1 Polarization: -23.01 SS G_CDS: -1.81 Total: -24.83 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.00 Total: 7.94 kcal Atomic # 7 Polarization: 9.99 SS G_CDS: -6.90 Total: 3.09 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -2.11 Total: -16.29 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.20 Total: -1.01 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.18 Total: -1.98 kcal Total: -28.30 -4.79 -33.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.737 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds