Wall clock time and date at job start Sun Mar 7 2021 08:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47331 * 2 1 4 4 C 1.50707 * 109.46686 * 119.99854 * 2 1 3 5 5 C 1.34238 * 126.49590 * 254.99612 * 4 2 1 6 6 N 1.36833 * 109.93284 * 179.97438 * 5 4 2 7 7 C 1.46504 * 125.05665 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47375 * 264.96941 * 7 6 5 9 9 O 1.21283 * 119.99734 * 0.02562 * 8 7 6 10 10 N 1.34766 * 120.00262 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00068 * 180.02562 * 10 8 7 12 12 H 1.08995 * 112.85027 * 23.80503 * 11 10 8 13 13 C 1.53781 * 113.61349 * 155.00016 * 11 10 8 14 14 C 1.53781 * 87.07957 * 89.11750 * 13 11 10 15 15 H 1.08994 * 113.61604 * 270.87584 * 14 13 11 16 16 C 1.53005 * 113.61341 * 140.06406 * 14 13 11 17 17 N 1.47317 * 110.59811 * 179.97438 * 16 14 13 18 18 C 1.34529 * 106.61336 * 118.52720 * 17 16 14 19 19 O 1.21541 * 123.76439 * 180.02562 * 18 17 16 20 20 N 1.33784 * 112.46306 * 0.02562 * 18 17 16 21 21 C 1.34767 * 111.64561 * 359.97438 * 20 18 17 22 22 O 1.21239 * 127.16048 * 180.02562 * 21 20 18 23 23 C 1.53776 * 87.08110 * 25.43338 * 14 13 11 24 24 C 1.37688 * 109.87987 * 0.02562 * 6 5 4 25 25 C 1.39079 * 133.51713 * 180.02562 * 24 6 5 26 26 C 1.37795 * 119.77834 * 179.97438 * 25 24 6 27 27 C 1.38784 * 120.66579 * 359.97438 * 26 25 24 28 28 C 1.36659 * 120.52973 * 359.97438 * 27 26 25 29 29 C 1.39593 * 119.76272 * 0.02562 * 28 27 26 30 30 H 0.96706 * 113.99941 * 60.00298 * 1 2 3 31 31 H 1.08997 * 109.47076 * 239.99077 * 2 1 3 32 32 H 1.48498 * 109.99786 * 298.67478 * 3 2 1 33 33 H 1.48489 * 110.00115 * 59.99752 * 3 2 1 34 34 H 1.08001 * 125.03457 * 0.02562 * 5 4 2 35 35 H 1.08997 * 109.47375 * 24.97688 * 7 6 5 36 36 H 1.09005 * 109.46769 * 144.97490 * 7 6 5 37 37 H 0.97000 * 120.00365 * 0.02562 * 10 8 7 38 38 H 1.09001 * 113.61340 * 203.66526 * 13 11 10 39 39 H 1.08994 * 113.61865 * 334.56774 * 13 11 10 40 40 H 1.09006 * 110.53172 * 57.16860 * 16 14 13 41 41 H 0.96993 * 126.68785 * 298.48844 * 17 16 14 42 42 H 0.96998 * 124.18157 * 179.97438 * 20 18 17 43 43 H 1.09003 * 113.60972 * 220.01909 * 23 14 13 44 44 H 1.09000 * 113.61836 * 89.12016 * 23 14 13 45 45 H 1.07996 * 120.11198 * 0.23201 * 25 24 6 46 46 H 1.08001 * 119.66165 * 179.97438 * 26 25 24 47 47 H 1.08002 * 119.73433 * 180.02562 * 27 26 25 48 48 H 1.07997 * 120.11882 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4607 -0.1375 2.3230 6 7 2.8021 -1.0989 3.2349 7 6 3.4062 -0.8401 4.5443 8 6 4.9044 -0.9633 4.4395 9 8 5.4172 -1.2397 3.3757 10 7 5.6745 -0.7665 5.5278 11 6 7.1311 -0.8858 5.4258 12 1 7.4991 -0.7240 4.4127 13 6 7.8914 -0.0812 6.4932 14 6 7.7984 -1.3290 7.3872 15 1 6.8973 -1.3614 7.9994 16 6 9.0718 -1.6044 8.1895 17 7 8.9103 -2.8100 9.0205 18 6 9.8372 -3.6914 8.6038 19 8 9.9790 -4.7996 9.0825 20 7 10.5855 -3.2119 7.6038 21 6 10.2188 -1.9602 7.2645 22 8 10.7050 -1.2638 6.3994 23 6 7.6937 -2.1522 6.0925 24 6 2.4933 -2.3456 2.7388 25 6 2.6274 -3.6359 3.2401 26 6 2.2135 -4.7106 2.4833 27 6 1.6626 -4.5192 1.2240 28 6 1.5205 -3.2599 0.7125 29 6 1.9331 -2.1569 1.4619 30 1 -0.3933 0.4417 -0.7651 31 1 1.7923 -0.5140 -0.8899 32 1 1.5880 2.4584 -1.2243 33 1 1.5615 2.4679 1.2084 34 1 2.5963 0.9249 2.4620 35 1 3.1464 0.1666 4.8718 36 1 3.0317 -1.5652 5.2669 37 1 5.2645 -0.5459 6.3787 38 1 8.9109 0.1737 6.2039 39 1 7.3329 0.7729 6.8762 40 1 9.3275 -0.7440 8.8080 41 1 8.2623 -2.9421 9.7300 42 1 11.3033 -3.7043 7.1757 43 1 6.9756 -2.9701 6.1521 44 1 8.6592 -2.4635 5.6937 45 1 3.0507 -3.7949 4.2208 46 1 2.3189 -5.7118 2.8742 47 1 1.3428 -5.3722 0.6439 48 1 1.0905 -3.1186 -0.2681 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17522896_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:22:13 Heat of formation + Delta-G solvation = 0.988185 kcal Electronic energy + Delta-G solvation = -35161.339753 eV Core-core repulsion = 30378.879735 eV Total energy + Delta-G solvation = -4782.460018 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.152 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.74030 -42.47269 -41.25900 -39.97197 -39.22301 -37.96772 -37.59590 -37.25107 -35.20628 -34.40748 -33.93336 -31.39527 -30.16604 -29.81301 -28.75978 -27.10831 -25.92315 -25.19366 -23.91312 -23.69512 -23.04576 -22.53122 -21.83423 -20.47824 -20.38014 -19.56482 -18.80703 -18.34994 -18.18966 -18.12743 -17.87348 -17.63437 -17.12226 -17.03148 -16.68947 -16.36041 -16.31749 -15.92808 -15.75807 -15.60191 -15.46258 -15.23188 -14.92178 -14.79879 -14.65423 -14.61838 -14.37384 -14.02448 -13.88919 -13.55597 -13.43225 -13.26698 -12.98715 -12.65390 -12.45140 -12.37607 -12.35655 -11.97476 -11.90240 -11.78965 -11.59815 -11.52637 -11.34621 -11.13237 -10.66316 -10.40716 -10.31528 -10.26652 -9.00581 -8.51622 -4.88542 0.29384 0.39669 0.80272 1.24163 1.33093 1.36534 1.40704 1.62184 1.66202 1.86309 1.89333 1.98531 2.05509 2.70127 3.03801 3.05744 3.10513 3.34745 3.36898 3.43860 3.53325 3.67603 3.71665 3.74327 3.80288 3.88081 3.91688 4.08684 4.14446 4.32977 4.33341 4.36641 4.43631 4.47152 4.58185 4.62533 4.65993 4.71194 4.79410 4.80816 4.88807 4.91940 5.00764 5.26579 5.29780 5.55079 5.65897 5.73398 5.81667 5.86790 5.91027 6.10435 6.18543 6.29804 6.37562 6.61208 6.95035 6.97708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.038 4.038 3 Si 0.679 3.321 4 C -0.150 4.150 5 C 0.071 3.929 6 N -0.466 5.466 7 C 0.093 3.907 8 C 0.494 3.506 9 O -0.507 6.507 10 N -0.713 5.713 11 C 0.126 3.874 12 H 0.110 0.890 13 C -0.139 4.139 14 C -0.113 4.113 15 H 0.113 0.887 16 C 0.100 3.900 17 N -0.721 5.721 18 C 0.704 3.296 19 O -0.539 6.539 20 N -0.681 5.681 21 C 0.530 3.470 22 O -0.459 6.459 23 C -0.152 4.152 24 C 0.109 3.891 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.145 4.145 28 C -0.065 4.065 29 C -0.086 4.086 30 H 0.375 0.625 31 H 0.072 0.928 32 H -0.260 1.260 33 H -0.255 1.255 34 H 0.169 0.831 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.402 0.598 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.442 0.558 42 H 0.435 0.565 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 4.487 4.697 6.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.148 4.148 3 Si 0.580 3.420 4 C -0.157 4.157 5 C -0.054 4.054 6 N -0.150 5.150 7 C -0.034 4.034 8 C 0.278 3.722 9 O -0.380 6.380 10 N -0.366 5.366 11 C 0.021 3.979 12 H 0.128 0.872 13 C -0.178 4.178 14 C -0.132 4.132 15 H 0.131 0.869 16 C -0.009 4.009 17 N -0.386 5.386 18 C 0.403 3.597 19 O -0.412 6.412 20 N -0.352 5.352 21 C 0.315 3.685 22 O -0.328 6.328 23 C -0.190 4.190 24 C 0.005 3.995 25 C -0.147 4.147 26 C -0.116 4.116 27 C -0.165 4.165 28 C -0.083 4.083 29 C -0.090 4.090 30 H 0.223 0.777 31 H 0.090 0.910 32 H -0.184 1.184 33 H -0.179 1.179 34 H 0.186 0.814 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.237 0.763 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.150 0.850 41 H 0.287 0.713 42 H 0.278 0.722 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.132 0.868 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.374 4.741 4.552 6.583 hybrid contribution -1.107 -0.369 0.258 1.195 sum -0.732 4.372 4.810 6.541 Atomic orbital electron populations 1.86641 1.18337 1.80012 1.49378 1.24018 0.83790 1.09814 0.97162 0.95077 0.91796 0.74612 0.80497 1.19423 1.08526 0.91602 0.96131 1.21506 1.01059 0.93924 0.88864 1.43165 1.52767 1.04671 1.14383 1.21575 0.90566 1.05914 0.85310 1.21043 0.89496 0.77308 0.84390 1.90828 1.74444 1.44971 1.27710 1.45621 1.06344 1.72519 1.12093 1.21726 0.79433 0.95731 1.01057 0.87185 1.23500 1.03088 0.96211 0.94979 1.22908 0.96214 0.98623 0.95457 0.86862 1.22120 0.95212 0.90960 0.92628 1.45527 1.38032 1.15365 1.39719 1.15860 0.79851 0.84300 0.79703 1.91105 1.71583 1.18597 1.59894 1.44364 1.36615 1.18199 1.36021 1.20698 0.83417 0.81137 0.83221 1.90882 1.57371 1.54274 1.30291 1.23580 1.02489 0.97963 0.94997 1.18142 1.01298 0.85841 0.94225 1.19936 1.05034 0.89220 1.00560 1.20818 0.98364 0.97926 0.94504 1.20659 1.02458 0.96895 0.96438 1.20273 0.98008 0.90939 0.99126 1.18942 1.03291 0.92767 0.93989 0.77742 0.90998 1.18426 1.17950 0.81376 0.85887 0.86403 0.76344 0.86781 0.89731 0.84970 0.71292 0.72230 0.90247 0.89220 0.86774 0.85731 0.85931 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.35 12.86 -35.23 -0.45 -1.81 16 2 C -0.04 -0.06 3.05 36.01 0.11 0.05 16 3 Si 0.68 -0.10 30.79 -169.99 -5.23 -5.33 16 4 C -0.15 -0.51 5.61 -102.71 -0.58 -1.08 16 5 C 0.07 0.13 9.89 -16.73 -0.17 -0.04 16 6 N -0.47 -0.72 2.27 -115.71 -0.26 -0.98 16 7 C 0.09 -0.26 6.48 -5.19 -0.03 -0.29 16 8 C 0.49 -0.44 7.90 -10.99 -0.09 -0.52 16 9 O -0.51 -2.18 16.02 5.55 0.09 -2.09 16 10 N -0.71 2.91 5.26 -53.02 -0.28 2.63 16 11 C 0.13 -0.35 4.32 -67.12 -0.29 -0.64 16 12 H 0.11 0.00 7.46 -51.93 -0.39 -0.38 16 13 C -0.14 0.68 7.22 -25.92 -0.19 0.49 16 14 C -0.11 0.63 3.83 -89.81 -0.34 0.29 16 15 H 0.11 -0.86 8.14 -51.93 -0.42 -1.28 16 16 C 0.10 -0.48 3.83 -68.20 -0.26 -0.74 16 17 N -0.72 2.86 6.24 -59.18 -0.37 2.49 16 18 C 0.70 -0.21 8.99 -88.02 -0.79 -1.00 16 19 O -0.54 -2.24 18.04 5.33 0.10 -2.15 16 20 N -0.68 1.19 5.70 -15.79 -0.09 1.10 16 21 C 0.53 -1.02 5.94 -10.55 -0.06 -1.08 16 22 O -0.46 -0.32 16.22 5.59 0.09 -0.23 16 23 C -0.15 0.44 7.15 -25.92 -0.19 0.25 16 24 C 0.11 0.41 6.80 -83.99 -0.57 -0.17 16 25 C -0.13 -0.34 10.00 -39.43 -0.39 -0.73 16 26 C -0.10 -0.23 10.01 -39.54 -0.40 -0.62 16 27 C -0.15 -0.40 9.97 -39.95 -0.40 -0.80 16 28 C -0.06 -0.25 10.05 -39.65 -0.40 -0.65 16 29 C -0.09 -0.40 6.35 -105.14 -0.67 -1.07 16 30 H 0.38 -0.62 8.74 45.56 0.40 -0.22 16 31 H 0.07 0.04 7.96 -51.93 -0.41 -0.37 16 32 H -0.26 -0.45 7.11 56.52 0.40 -0.05 16 33 H -0.25 -0.47 7.04 56.52 0.40 -0.07 16 34 H 0.17 -0.15 6.30 -52.49 -0.33 -0.48 16 35 H 0.12 -0.73 8.12 -51.93 -0.42 -1.16 16 36 H 0.12 -0.58 8.14 -51.93 -0.42 -1.00 16 37 H 0.40 -2.98 8.70 -40.82 -0.36 -3.34 16 38 H 0.11 -0.38 6.46 -51.93 -0.34 -0.72 16 39 H 0.08 -0.53 8.14 -51.93 -0.42 -0.95 16 40 H 0.13 -0.89 8.14 -51.93 -0.42 -1.31 16 41 H 0.44 -2.58 8.96 -40.82 -0.37 -2.95 16 42 H 0.44 -1.21 8.96 -40.82 -0.37 -1.57 16 43 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 44 H 0.09 -0.12 6.15 -51.93 -0.32 -0.43 16 45 H 0.11 0.06 8.06 -52.49 -0.42 -0.36 16 46 H 0.12 0.02 8.06 -52.49 -0.42 -0.41 16 47 H 0.12 0.09 8.06 -52.49 -0.42 -0.33 16 48 H 0.12 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 405.72 15.07 6.11 6.11 Total: 0.00 -14.79 405.72 -11.90 -26.70 By element: Atomic # 1 Polarization: -12.19 SS G_CDS: -5.90 Total: -18.10 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -5.70 Total: -8.35 kcal Atomic # 7 Polarization: 6.25 SS G_CDS: -1.00 Total: 5.24 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.18 Total: -6.27 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: -5.23 Total: -5.33 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -14.79 -11.90 -26.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.684 kcal (2) G-P(sol) polarization free energy of solvation -14.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds