Wall clock time and date at job start Sun Mar 7 2021 08:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47331 * 2 1 4 4 C 1.50707 * 109.46686 * 119.99854 * 2 1 3 5 5 C 1.34238 * 126.49590 * 254.99612 * 4 2 1 6 6 N 1.36833 * 109.93284 * 179.97438 * 5 4 2 7 7 C 1.46504 * 125.05665 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47375 * 264.96941 * 7 6 5 9 9 O 1.21283 * 119.99734 * 0.02562 * 8 7 6 10 10 N 1.34766 * 120.00262 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00068 * 180.02562 * 10 8 7 12 12 H 1.08995 * 112.85027 * 23.80503 * 11 10 8 13 13 C 1.53781 * 113.61349 * 155.00016 * 11 10 8 14 14 C 1.53781 * 87.07957 * 89.11750 * 13 11 10 15 15 H 1.08994 * 113.61604 * 270.87584 * 14 13 11 16 16 C 1.53005 * 113.61341 * 140.06406 * 14 13 11 17 17 N 1.47317 * 110.59811 * 179.97438 * 16 14 13 18 18 C 1.34529 * 106.61336 * 118.52720 * 17 16 14 19 19 O 1.21541 * 123.76439 * 180.02562 * 18 17 16 20 20 N 1.33784 * 112.46306 * 0.02562 * 18 17 16 21 21 C 1.34767 * 111.64561 * 359.97438 * 20 18 17 22 22 O 1.21239 * 127.16048 * 180.02562 * 21 20 18 23 23 C 1.53776 * 87.08110 * 25.43338 * 14 13 11 24 24 C 1.37688 * 109.87987 * 0.02562 * 6 5 4 25 25 C 1.39079 * 133.51713 * 180.02562 * 24 6 5 26 26 C 1.37795 * 119.77834 * 179.97438 * 25 24 6 27 27 C 1.38784 * 120.66579 * 359.97438 * 26 25 24 28 28 C 1.36659 * 120.52973 * 359.97438 * 27 26 25 29 29 C 1.39593 * 119.76272 * 0.02562 * 28 27 26 30 30 H 0.96706 * 113.99941 * 60.00298 * 1 2 3 31 31 H 1.08997 * 109.47076 * 239.99077 * 2 1 3 32 32 H 1.48498 * 109.99786 * 298.67478 * 3 2 1 33 33 H 1.48489 * 110.00115 * 59.99752 * 3 2 1 34 34 H 1.08001 * 125.03457 * 0.02562 * 5 4 2 35 35 H 1.08997 * 109.47375 * 24.97688 * 7 6 5 36 36 H 1.09005 * 109.46769 * 144.97490 * 7 6 5 37 37 H 0.97000 * 120.00365 * 0.02562 * 10 8 7 38 38 H 1.09001 * 113.61340 * 203.66526 * 13 11 10 39 39 H 1.08994 * 113.61865 * 334.56774 * 13 11 10 40 40 H 1.09006 * 110.53172 * 57.16860 * 16 14 13 41 41 H 0.96993 * 126.68785 * 298.48844 * 17 16 14 42 42 H 0.96998 * 124.18157 * 179.97438 * 20 18 17 43 43 H 1.09003 * 113.60972 * 220.01909 * 23 14 13 44 44 H 1.09000 * 113.61836 * 89.12016 * 23 14 13 45 45 H 1.07996 * 120.11198 * 0.23201 * 25 24 6 46 46 H 1.08001 * 119.66165 * 179.97438 * 26 25 24 47 47 H 1.08002 * 119.73433 * 180.02562 * 27 26 25 48 48 H 1.07997 * 120.11882 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4607 -0.1375 2.3230 6 7 2.8021 -1.0989 3.2349 7 6 3.4062 -0.8401 4.5443 8 6 4.9044 -0.9633 4.4395 9 8 5.4172 -1.2397 3.3757 10 7 5.6745 -0.7665 5.5278 11 6 7.1311 -0.8858 5.4258 12 1 7.4991 -0.7240 4.4127 13 6 7.8914 -0.0812 6.4932 14 6 7.7984 -1.3290 7.3872 15 1 6.8973 -1.3614 7.9994 16 6 9.0718 -1.6044 8.1895 17 7 8.9103 -2.8100 9.0205 18 6 9.8372 -3.6914 8.6038 19 8 9.9790 -4.7996 9.0825 20 7 10.5855 -3.2119 7.6038 21 6 10.2188 -1.9602 7.2645 22 8 10.7050 -1.2638 6.3994 23 6 7.6937 -2.1522 6.0925 24 6 2.4933 -2.3456 2.7388 25 6 2.6274 -3.6359 3.2401 26 6 2.2135 -4.7106 2.4833 27 6 1.6626 -4.5192 1.2240 28 6 1.5205 -3.2599 0.7125 29 6 1.9331 -2.1569 1.4619 30 1 -0.3933 0.4417 -0.7651 31 1 1.7923 -0.5140 -0.8899 32 1 1.5880 2.4584 -1.2243 33 1 1.5615 2.4679 1.2084 34 1 2.5963 0.9249 2.4620 35 1 3.1464 0.1666 4.8718 36 1 3.0317 -1.5652 5.2669 37 1 5.2645 -0.5459 6.3787 38 1 8.9109 0.1737 6.2039 39 1 7.3329 0.7729 6.8762 40 1 9.3275 -0.7440 8.8080 41 1 8.2623 -2.9421 9.7300 42 1 11.3033 -3.7043 7.1757 43 1 6.9756 -2.9701 6.1521 44 1 8.6592 -2.4635 5.6937 45 1 3.0507 -3.7949 4.2208 46 1 2.3189 -5.7118 2.8742 47 1 1.3428 -5.3722 0.6439 48 1 1.0905 -3.1186 -0.2681 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17522896_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:22:12 Heat of formation + Delta-G solvation = -8.171601 kcal Electronic energy + Delta-G solvation = -35161.736951 eV Core-core repulsion = 30378.879735 eV Total energy + Delta-G solvation = -4782.857216 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.152 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.59060 -42.53123 -41.12755 -39.93697 -39.11224 -38.08494 -37.68918 -37.25412 -35.06353 -34.34865 -33.87108 -31.46311 -30.29212 -29.67997 -28.67809 -26.82290 -25.91582 -25.04729 -23.79958 -23.78596 -23.00048 -22.47058 -21.76803 -20.55029 -20.17019 -19.45506 -18.67933 -18.44070 -18.12852 -18.04462 -17.73712 -17.69152 -16.96065 -16.88408 -16.56264 -16.43003 -16.27215 -15.88675 -15.73435 -15.60631 -15.36565 -15.07985 -14.92733 -14.82505 -14.73358 -14.59484 -14.32407 -14.12013 -13.66757 -13.52367 -13.31349 -13.09573 -12.74410 -12.73044 -12.56999 -12.49458 -12.34845 -12.08567 -11.73113 -11.63898 -11.61087 -11.51014 -11.22921 -11.10498 -10.55676 -10.44436 -10.34647 -10.12968 -9.16446 -8.63718 -4.87225 0.13525 0.52106 0.63326 1.33397 1.41200 1.41803 1.46768 1.60549 1.63158 1.92871 1.93603 2.14699 2.18877 2.90913 2.93808 3.35577 3.37192 3.52023 3.58827 3.65723 3.71685 3.75130 3.79699 3.86742 4.01714 4.07599 4.15111 4.22315 4.27029 4.28921 4.39782 4.40998 4.56158 4.61816 4.70434 4.71663 4.77641 4.79195 4.89346 4.91193 4.99520 5.00638 5.13480 5.15815 5.50258 5.54068 5.65176 5.72279 5.74758 5.79582 5.88546 6.17534 6.23692 6.36620 6.49899 6.67597 7.09575 7.17655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.054 4.054 3 Si 0.762 3.238 4 C -0.182 4.182 5 C 0.074 3.926 6 N -0.466 5.466 7 C 0.088 3.912 8 C 0.494 3.506 9 O -0.568 6.568 10 N -0.690 5.690 11 C 0.120 3.880 12 H 0.073 0.927 13 C -0.126 4.126 14 C -0.093 4.093 15 H 0.150 0.850 16 C 0.107 3.893 17 N -0.700 5.700 18 C 0.701 3.299 19 O -0.590 6.590 20 N -0.681 5.681 21 C 0.526 3.474 22 O -0.490 6.490 23 C -0.159 4.159 24 C 0.091 3.909 25 C -0.133 4.133 26 C -0.108 4.108 27 C -0.154 4.154 28 C -0.088 4.088 29 C -0.119 4.119 30 H 0.389 0.611 31 H 0.071 0.929 32 H -0.285 1.285 33 H -0.275 1.275 34 H 0.195 0.805 35 H 0.163 0.837 36 H 0.145 0.855 37 H 0.424 0.576 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.167 0.833 41 H 0.454 0.546 42 H 0.435 0.565 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.134 0.866 46 H 0.146 0.854 47 H 0.137 0.863 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 6.204 7.400 9.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.162 4.162 3 Si 0.664 3.336 4 C -0.189 4.189 5 C -0.051 4.051 6 N -0.149 5.149 7 C -0.037 4.037 8 C 0.280 3.720 9 O -0.445 6.445 10 N -0.344 5.344 11 C 0.014 3.986 12 H 0.092 0.908 13 C -0.164 4.164 14 C -0.112 4.112 15 H 0.168 0.832 16 C -0.001 4.001 17 N -0.365 5.365 18 C 0.400 3.600 19 O -0.466 6.466 20 N -0.351 5.351 21 C 0.313 3.687 22 O -0.360 6.360 23 C -0.197 4.197 24 C -0.014 4.014 25 C -0.153 4.153 26 C -0.127 4.127 27 C -0.173 4.173 28 C -0.107 4.107 29 C -0.123 4.123 30 H 0.239 0.761 31 H 0.089 0.911 32 H -0.211 1.211 33 H -0.201 1.201 34 H 0.212 0.788 35 H 0.181 0.819 36 H 0.163 0.837 37 H 0.262 0.738 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.184 0.816 41 H 0.302 0.698 42 H 0.278 0.722 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.152 0.848 46 H 0.163 0.837 47 H 0.155 0.845 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.340 6.480 7.323 9.784 hybrid contribution -0.873 -0.921 -0.623 1.413 sum -1.212 5.560 6.699 8.790 Atomic orbital electron populations 1.86590 1.19143 1.80717 1.50499 1.24370 0.83401 1.11690 0.96731 0.94077 0.90467 0.71267 0.77747 1.19764 1.10096 0.91459 0.97570 1.21934 0.99724 0.95062 0.88406 1.43413 1.52139 1.03750 1.15590 1.22002 0.88755 1.09069 0.83832 1.21407 0.90414 0.76212 0.84007 1.90818 1.75560 1.48039 1.30114 1.45395 1.05578 1.71000 1.12379 1.21648 0.80273 0.96751 0.99946 0.90842 1.23381 1.02131 0.97113 0.93791 1.22945 0.97045 0.96832 0.94381 0.83196 1.22295 0.94228 0.91295 0.92260 1.45466 1.36968 1.14679 1.39421 1.16012 0.80337 0.84019 0.79587 1.91070 1.73154 1.20832 1.61584 1.44415 1.36506 1.18522 1.35706 1.21204 0.83838 0.80572 0.83051 1.90872 1.58570 1.54906 1.31686 1.23555 1.01194 0.97972 0.97019 1.18396 1.01603 0.87052 0.94333 1.20241 1.04665 0.88963 1.01445 1.21141 0.98150 0.99021 0.94387 1.20921 1.02340 0.96994 0.97003 1.20449 0.99066 0.91634 0.99503 1.19373 1.04124 0.93748 0.95044 0.76105 0.91060 1.21120 1.20093 0.78847 0.81950 0.83732 0.73769 0.88383 0.86997 0.81558 0.69848 0.72211 0.90938 0.91471 0.84778 0.83654 0.84466 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.63 12.86 -148.98 -1.92 -5.55 16 2 C -0.05 -0.24 3.05 71.24 0.22 -0.03 16 3 Si 0.76 -0.18 30.79 68.60 2.11 1.93 16 4 C -0.18 -1.47 5.61 -18.62 -0.10 -1.58 16 5 C 0.07 0.27 9.89 83.00 0.82 1.09 16 6 N -0.47 -1.26 2.27 -520.00 -1.18 -2.44 16 7 C 0.09 -0.67 6.48 85.63 0.56 -0.12 16 8 C 0.49 -1.28 7.90 87.66 0.69 -0.59 16 9 O -0.57 -5.56 16.02 -3.04 -0.05 -5.61 16 10 N -0.69 6.90 5.26 -440.06 -2.32 4.58 16 11 C 0.12 -0.70 4.32 45.52 0.20 -0.50 16 12 H 0.07 0.16 7.46 -2.39 -0.02 0.14 16 13 C -0.13 1.47 7.22 31.12 0.22 1.70 16 14 C -0.09 1.28 3.83 -10.27 -0.04 1.24 16 15 H 0.15 -3.04 8.14 -2.39 -0.02 -3.06 16 16 C 0.11 -1.26 3.83 44.37 0.17 -1.09 16 17 N -0.70 6.72 6.24 -459.58 -2.87 3.85 16 18 C 0.70 -0.28 8.99 179.44 1.61 1.33 16 19 O -0.59 -5.54 18.04 -3.84 -0.07 -5.61 16 20 N -0.68 1.83 5.70 -441.12 -2.52 -0.69 16 21 C 0.53 -1.98 5.94 87.94 0.52 -1.46 16 22 O -0.49 -1.13 16.22 -2.90 -0.05 -1.18 16 23 C -0.16 0.93 7.15 31.12 0.22 1.16 16 24 C 0.09 0.75 6.80 39.03 0.27 1.02 16 25 C -0.13 -0.75 10.00 22.37 0.22 -0.53 16 26 C -0.11 -0.58 10.01 22.30 0.22 -0.35 16 27 C -0.15 -1.08 9.97 22.03 0.22 -0.86 16 28 C -0.09 -0.89 10.05 22.23 0.22 -0.67 16 29 C -0.12 -1.34 6.35 -20.20 -0.13 -1.47 16 30 H 0.39 -0.78 8.74 -74.05 -0.65 -1.43 16 31 H 0.07 0.24 7.96 -2.39 -0.02 0.22 16 32 H -0.28 -1.06 7.11 99.48 0.71 -0.35 16 33 H -0.27 -0.83 7.04 99.48 0.70 -0.13 16 34 H 0.19 -0.57 6.30 -2.91 -0.02 -0.59 16 35 H 0.16 -2.55 8.12 -2.39 -0.02 -2.57 16 36 H 0.15 -1.87 8.14 -2.38 -0.02 -1.89 16 37 H 0.42 -7.89 8.70 -92.71 -0.81 -8.70 16 38 H 0.10 -0.72 6.46 -2.39 -0.02 -0.73 16 39 H 0.11 -1.85 8.14 -2.39 -0.02 -1.87 16 40 H 0.17 -2.89 8.14 -2.38 -0.02 -2.91 16 41 H 0.45 -6.41 8.96 -92.71 -0.83 -7.24 16 42 H 0.44 -1.66 8.96 -92.71 -0.83 -2.49 16 43 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.07 -0.07 6.15 -2.39 -0.01 -0.08 16 45 H 0.13 0.05 8.06 -2.91 -0.02 0.02 16 46 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 47 H 0.14 0.37 8.06 -2.91 -0.02 0.34 16 48 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 Total: 0.00 -40.37 405.72 -4.73 -45.11 By element: Atomic # 1 Polarization: -30.67 SS G_CDS: -2.00 Total: -32.67 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 6.12 Total: -1.73 kcal Atomic # 7 Polarization: 14.18 SS G_CDS: -8.88 Total: 5.30 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -2.08 Total: -17.94 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.11 Total: 1.93 kcal Total: -40.37 -4.73 -45.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17522896_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.936 kcal (2) G-P(sol) polarization free energy of solvation -40.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds