Wall clock time and date at job start Sun Mar 7 2021 08:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 116.99836 * 2 1 4 4 O 1.20825 * 120.00247 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00054 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47054 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46848 * 180.02562 * 6 5 3 8 8 H 1.08999 * 112.84835 * 316.18762 * 7 6 5 9 9 C 1.54052 * 113.62259 * 87.50492 * 7 6 5 10 10 C 1.53784 * 86.98517 * 139.97509 * 9 7 6 11 11 H 1.08998 * 113.61555 * 219.97548 * 10 9 7 12 12 N 1.46500 * 113.61063 * 89.16300 * 10 9 7 13 13 C 1.34778 * 120.00284 * 105.86173 * 12 10 9 14 14 O 1.21693 * 119.99789 * 359.97438 * 13 12 10 15 15 C 1.46679 * 120.00182 * 179.97438 * 13 12 10 16 16 C 1.37864 * 126.23285 * 179.97438 * 15 13 12 17 17 C 1.50699 * 126.46053 * 0.02562 * 16 15 13 18 18 C 1.39845 * 107.08581 * 179.73178 * 16 15 13 19 19 C 1.35456 * 107.86063 * 0.41268 * 18 16 15 20 20 C 1.50699 * 125.56099 * 179.84541 * 19 18 16 21 21 O 1.42892 * 109.47249 * 119.69877 * 20 19 18 22 22 Si 1.86298 * 109.47032 * 359.69262 * 20 19 18 23 23 N 1.35534 * 108.87004 * 359.58566 * 19 18 16 24 24 C 1.53774 * 87.17515 * 334.56981 * 10 9 7 25 25 H 1.09006 * 109.46992 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47199 * 299.99853 * 1 2 3 27 27 H 1.09004 * 109.47507 * 59.99642 * 1 2 3 28 28 H 1.09002 * 109.46630 * 60.00131 * 5 3 2 29 29 H 1.08999 * 109.46993 * 300.00564 * 5 3 2 30 30 H 1.08998 * 109.47687 * 59.99830 * 6 5 3 31 31 H 1.09008 * 109.47188 * 300.00011 * 6 5 3 32 32 H 1.08997 * 113.61210 * 25.47393 * 9 7 6 33 33 H 1.09001 * 113.69480 * 254.49425 * 9 7 6 34 34 H 0.96999 * 119.99870 * 285.85698 * 12 10 9 35 35 H 1.09007 * 109.47128 * 89.99409 * 17 16 15 36 36 H 1.08998 * 109.47272 * 209.99801 * 17 16 15 37 37 H 1.09005 * 109.47013 * 330.00315 * 17 16 15 38 38 H 1.07993 * 126.06630 * 180.28370 * 18 16 15 39 39 H 1.09004 * 109.46453 * 239.69945 * 20 19 18 40 40 H 0.96703 * 114.00176 * 299.99748 * 21 20 19 41 41 H 1.48506 * 109.99834 * 58.68765 * 22 20 19 42 42 H 1.48502 * 110.00011 * 180.02562 * 22 20 19 43 43 H 0.97002 * 125.67393 * 180.28242 * 23 19 18 44 44 H 1.09006 * 113.61721 * 140.02071 * 24 10 9 45 45 H 1.08999 * 113.61730 * 270.83973 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 6 5.5279 2.8222 -0.0011 8 1 5.9891 2.1200 0.6934 9 6 6.1464 2.7942 -1.4117 10 6 7.1376 3.8576 -0.9099 11 1 7.3496 4.6369 -1.6419 12 7 8.3503 3.2937 -0.3119 13 6 9.5168 3.3373 -0.9855 14 8 9.5627 3.8447 -2.0906 15 6 10.7311 2.7732 -0.3866 16 6 11.9855 2.7478 -0.9580 17 6 12.3646 3.2934 -2.3106 18 6 12.8413 2.1265 -0.0430 19 6 12.1089 1.7823 1.0433 20 6 12.6362 1.0848 2.2706 21 8 12.4287 1.9138 3.4158 22 14 14.4583 0.7564 2.0636 23 7 10.8258 2.1729 0.8485 24 6 6.0697 4.2562 0.1224 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.9556 0.7810 -0.8909 29 1 3.9564 0.7806 0.8891 30 1 3.6107 3.2357 0.8906 31 1 3.6099 3.2368 -0.8894 32 1 5.4748 3.1562 -2.1901 33 1 6.6166 1.8441 -1.6651 34 1 8.3136 2.8889 0.5688 35 1 12.6688 4.3354 -2.2099 36 1 13.1911 2.7115 -2.7185 37 1 11.5082 3.2283 -2.9817 38 1 13.8980 1.9502 -0.1793 39 1 12.1098 0.1399 2.4058 40 1 12.8694 2.7731 3.3645 41 1 15.1833 2.0342 1.8467 42 1 14.9903 0.0682 3.2672 43 1 10.0958 2.0502 1.4754 44 1 6.4780 4.4855 1.1067 45 1 5.3780 5.0182 -0.2369 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17523010_13940406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:24:58 Heat of formation + Delta-G solvation = -94.162994 kcal Electronic energy + Delta-G solvation = -26817.695533 eV Core-core repulsion = 22803.091975 eV Total energy + Delta-G solvation = -4014.603559 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.62182 -41.53799 -41.00380 -39.28326 -37.92578 -37.55568 -35.26013 -33.73943 -33.14552 -31.58122 -29.19689 -28.16473 -27.44988 -26.86228 -26.39235 -23.66718 -22.70157 -21.66534 -21.59914 -20.53073 -20.29217 -19.55615 -18.58458 -18.20322 -17.67321 -17.53140 -17.11497 -16.78687 -16.43342 -16.09183 -15.96847 -15.61125 -15.30231 -15.19627 -14.84296 -14.65788 -14.41781 -14.29228 -14.06923 -13.87243 -13.60333 -13.57522 -13.48942 -13.45746 -13.10371 -12.93444 -12.76716 -12.31023 -12.25015 -12.05239 -11.89905 -11.79230 -11.65471 -11.38901 -11.21912 -11.10100 -10.83726 -10.18649 -9.83667 -9.17887 -5.00140 0.34747 1.08695 1.20526 1.53623 1.57916 1.71488 1.80363 1.96639 2.13332 2.34155 3.16029 3.33396 3.34845 3.48799 3.60634 3.67872 3.72261 3.80957 4.00876 4.10855 4.14185 4.14834 4.19084 4.23001 4.31483 4.36254 4.40016 4.58154 4.60742 4.64038 4.72222 4.73329 4.74175 4.84390 4.87338 4.96493 5.02336 5.05950 5.15644 5.21488 5.38910 5.41521 5.50842 5.64427 5.89529 6.17505 6.23223 6.42221 6.73711 7.13298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.458 3.542 4 O -0.507 6.507 5 C -0.113 4.113 6 C -0.099 4.099 7 C -0.112 4.112 8 H 0.091 0.909 9 C -0.148 4.148 10 C 0.121 3.879 11 H 0.106 0.894 12 N -0.716 5.716 13 C 0.593 3.407 14 O -0.519 6.519 15 C -0.056 4.056 16 C -0.063 4.063 17 C -0.094 4.094 18 C -0.199 4.199 19 C 0.028 3.972 20 C -0.061 4.061 21 O -0.535 6.535 22 Si 0.717 3.283 23 N -0.525 5.525 24 C -0.140 4.140 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.151 0.849 39 H 0.120 0.880 40 H 0.380 0.620 41 H -0.255 1.255 42 H -0.255 1.255 43 H 0.416 0.584 44 H 0.074 0.926 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -3.830 1.563 4.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.395 6.395 5 C -0.151 4.151 6 C -0.137 4.137 7 C -0.130 4.130 8 H 0.109 0.891 9 C -0.187 4.187 10 C 0.015 3.985 11 H 0.124 0.876 12 N -0.367 5.367 13 C 0.381 3.619 14 O -0.394 6.394 15 C -0.169 4.169 16 C -0.071 4.071 17 C -0.151 4.151 18 C -0.224 4.224 19 C -0.090 4.090 20 C -0.170 4.170 21 O -0.341 6.341 22 Si 0.615 3.385 23 N -0.121 5.121 24 C -0.178 4.178 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.227 0.773 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.168 0.832 39 H 0.138 0.862 40 H 0.229 0.771 41 H -0.179 1.179 42 H -0.180 1.180 43 H 0.253 0.747 44 H 0.092 0.908 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.843 -3.513 1.334 3.851 hybrid contribution -1.114 0.702 1.424 1.940 sum -0.271 -2.811 2.758 3.947 Atomic orbital electron populations 1.23305 0.75949 1.03957 1.02700 1.86509 1.23794 1.33542 1.84015 1.23908 0.92401 0.81360 0.72254 1.90694 1.67355 1.36354 1.45051 1.21437 0.87264 1.00363 1.05989 1.21431 0.94363 0.93713 1.04173 1.22684 0.94830 0.97508 0.97984 0.89119 1.23592 0.98216 1.00095 0.96749 1.21837 0.83211 0.96802 0.96615 0.87561 1.45566 1.08269 1.61877 1.20968 1.17018 0.81377 0.78590 0.84897 1.90845 1.84984 1.44609 1.18991 1.20215 0.96052 1.11946 0.88712 1.19946 0.90431 0.99629 0.97109 1.20403 1.02446 1.00309 0.91937 1.20614 0.99906 1.07573 0.94307 1.21042 0.84468 1.04765 0.98758 1.24907 1.14197 0.95516 0.82414 1.86591 1.75630 1.31909 1.39973 0.94243 0.71744 0.85617 0.86854 1.41845 1.09630 1.45644 1.15009 1.23369 0.97553 0.97270 0.99639 0.87891 0.91781 0.91758 0.87500 0.87665 0.90620 0.90471 0.88665 0.90842 0.77264 0.91284 0.91487 0.89976 0.83183 0.86195 0.77143 1.17881 1.18012 0.74662 0.90769 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.55 101.05 1.07 1.05 16 2 O -0.36 -0.46 10.57 -39.26 -0.41 -0.87 16 3 C 0.46 0.65 7.96 36.01 0.29 0.93 16 4 O -0.51 -2.27 15.73 -18.75 -0.29 -2.57 16 5 C -0.11 0.23 5.80 -27.88 -0.16 0.07 16 6 C -0.10 0.19 4.34 -26.73 -0.12 0.07 16 7 C -0.11 0.34 3.54 -89.66 -0.32 0.03 16 8 H 0.09 -0.37 8.13 -51.93 -0.42 -0.79 16 9 C -0.15 0.28 7.45 -25.77 -0.19 0.09 16 10 C 0.12 -0.12 4.30 -67.12 -0.29 -0.41 16 11 H 0.11 0.10 7.50 -51.93 -0.39 -0.29 16 12 N -0.72 0.70 5.26 -54.32 -0.29 0.42 16 13 C 0.59 1.29 7.79 -12.85 -0.10 1.19 16 14 O -0.52 -2.87 14.42 5.19 0.07 -2.79 16 15 C -0.06 -0.08 7.06 -81.98 -0.58 -0.65 16 16 C -0.06 -0.11 6.21 -104.16 -0.65 -0.76 16 17 C -0.09 -0.14 9.83 36.01 0.35 0.21 16 18 C -0.20 -0.01 9.27 -39.97 -0.37 -0.38 16 19 C 0.03 -0.02 6.47 -81.95 -0.53 -0.55 16 20 C -0.06 0.12 3.08 36.01 0.11 0.23 16 21 O -0.53 0.37 12.88 -35.23 -0.45 -0.08 16 22 Si 0.72 -1.64 30.54 -169.99 -5.19 -6.83 16 23 N -0.52 0.56 5.99 -5.70 -0.03 0.53 16 24 C -0.14 0.36 7.38 -25.92 -0.19 0.17 16 25 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 26 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 27 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 28 H 0.11 -0.34 8.14 -51.93 -0.42 -0.76 16 29 H 0.11 -0.38 8.14 -51.93 -0.42 -0.81 16 30 H 0.08 -0.07 8.10 -51.93 -0.42 -0.49 16 31 H 0.08 -0.06 7.80 -51.92 -0.41 -0.47 16 32 H 0.09 -0.18 7.90 -51.93 -0.41 -0.59 16 33 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 34 H 0.39 -1.37 7.83 -40.82 -0.32 -1.69 16 35 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.08 0.26 6.48 -51.93 -0.34 -0.08 16 38 H 0.15 -0.26 6.17 -52.49 -0.32 -0.59 16 39 H 0.12 -0.36 7.96 -51.93 -0.41 -0.77 16 40 H 0.38 -1.15 8.70 45.56 0.40 -0.75 16 41 H -0.25 0.01 7.11 56.52 0.40 0.41 16 42 H -0.26 -0.22 7.11 56.52 0.40 0.18 16 43 H 0.42 -1.42 8.19 -40.82 -0.33 -1.76 16 44 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 45 H 0.10 -0.25 8.10 -51.93 -0.42 -0.68 16 LS Contribution 376.76 15.07 5.68 5.68 Total: 0.00 -9.29 376.76 -9.40 -18.69 By element: Atomic # 1 Polarization: -6.64 SS G_CDS: -6.80 Total: -13.44 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.68 Total: 1.28 kcal Atomic # 7 Polarization: 1.26 SS G_CDS: -0.32 Total: 0.94 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -1.09 Total: -6.32 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: -5.19 Total: -6.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -9.29 -9.40 -18.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17523010_13940406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.471 kcal (2) G-P(sol) polarization free energy of solvation -9.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds