Wall clock time and date at job start Sun Mar 7 2021 08:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99911 * 2 1 4 4 O 1.20826 * 119.99856 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00175 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47570 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47659 * 180.02562 * 6 5 3 8 8 H 1.09003 * 112.85002 * 316.20109 * 7 6 5 9 9 C 1.53790 * 113.69021 * 87.46008 * 7 6 5 10 10 C 1.53785 * 87.07761 * 139.99392 * 9 7 6 11 11 H 1.08993 * 113.69215 * 220.00723 * 10 9 7 12 12 N 1.46506 * 113.61045 * 89.11899 * 10 9 7 13 13 C 1.34773 * 119.99982 * 107.50425 * 12 10 9 14 14 O 1.21284 * 119.99881 * 359.97438 * 13 12 10 15 15 C 1.50697 * 120.00211 * 179.97438 * 13 12 10 16 16 C 1.53002 * 109.47266 * 179.97438 * 15 13 12 17 17 O 1.42901 * 109.47022 * 179.97438 * 16 15 13 18 18 C 1.35898 * 117.00043 * 179.97438 * 17 16 15 19 19 C 1.38707 * 120.05730 * 179.97438 * 18 17 16 20 20 C 1.38172 * 119.94461 * 179.97438 * 19 18 17 21 21 C 1.50696 * 119.97101 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.46949 * 64.98112 * 21 20 19 23 23 Si 1.86300 * 109.47178 * 184.97899 * 21 20 19 24 24 C 1.38241 * 120.05236 * 359.97438 * 20 19 18 25 25 C 1.38288 * 120.11556 * 359.97438 * 24 20 19 26 26 C 1.38119 * 120.05366 * 0.28328 * 25 24 20 27 27 C 1.53777 * 113.61722 * 184.99817 * 7 6 5 28 28 H 1.09005 * 109.46595 * 299.99485 * 1 2 3 29 29 H 1.08993 * 109.47572 * 59.99413 * 1 2 3 30 30 H 1.08998 * 109.46792 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46883 * 60.00017 * 5 3 2 32 32 H 1.09004 * 109.47436 * 300.00482 * 5 3 2 33 33 H 1.08999 * 109.47270 * 59.99928 * 6 5 3 34 34 H 1.09004 * 109.46868 * 300.00504 * 6 5 3 35 35 H 1.09004 * 113.60882 * 25.45092 * 9 7 6 36 36 H 1.09001 * 113.61608 * 254.54407 * 9 7 6 37 37 H 0.97004 * 119.99927 * 287.49714 * 12 10 9 38 38 H 1.09004 * 109.46820 * 59.99525 * 15 13 12 39 39 H 1.09004 * 109.46795 * 300.00075 * 15 13 12 40 40 H 1.09004 * 109.46789 * 59.99923 * 16 15 13 41 41 H 1.08999 * 109.46950 * 299.99902 * 16 15 13 42 42 H 1.07998 * 120.02706 * 359.96025 * 19 18 17 43 43 H 1.09000 * 109.47732 * 304.98426 * 21 20 19 44 44 H 0.96700 * 114.00504 * 60.00043 * 22 21 20 45 45 H 1.48498 * 110.00216 * 180.02562 * 23 21 20 46 46 H 1.48497 * 110.00022 * 301.32102 * 23 21 20 47 47 H 1.08006 * 119.93966 * 180.02562 * 24 20 19 48 48 H 1.08002 * 119.96980 * 179.97438 * 25 24 20 49 49 H 1.07998 * 120.02956 * 179.72220 * 26 25 24 50 50 H 1.08999 * 113.61433 * 105.38498 * 27 7 6 51 51 H 1.08996 * 113.69224 * 334.49491 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5280 2.8223 -0.0011 8 1 5.9893 2.1199 0.6932 9 6 6.1471 2.7934 -1.4085 10 6 7.1390 3.8570 -0.9083 11 1 7.3520 4.6358 -1.6404 12 7 8.3508 3.2931 -0.3085 13 6 9.5245 3.3638 -0.9673 14 8 9.5773 3.8938 -2.0569 15 6 10.7712 2.7844 -0.3500 16 6 11.9544 2.9954 -1.2967 17 8 13.1367 2.4465 -0.7111 18 6 14.2862 2.5505 -1.4286 19 6 15.4712 2.0397 -0.9200 20 6 16.6385 2.1463 -1.6517 21 6 17.9262 1.5911 -1.1000 22 8 17.8232 0.1702 -0.9886 23 14 19.3303 2.0240 -2.2454 24 6 16.6256 2.7609 -2.8900 25 6 15.4452 3.2700 -3.3997 26 6 14.2769 3.1707 -2.6698 27 6 6.0698 4.2561 0.1224 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9556 0.7810 -0.8908 32 1 3.9565 0.7806 0.8891 33 1 3.6108 3.2357 0.8906 34 1 3.6099 3.2368 -0.8893 35 1 5.4762 3.1544 -2.1881 36 1 6.6166 1.8423 -1.6596 37 1 8.3085 2.8690 0.5629 38 1 10.6294 1.7174 -0.1783 39 1 10.9715 3.2817 0.5991 40 1 12.0963 4.0624 -1.4688 41 1 11.7538 2.4978 -2.2455 42 1 15.4817 1.5594 0.0472 43 1 18.1147 2.0200 -0.1158 44 1 17.6553 -0.2791 -1.8282 45 1 20.6059 1.4815 -1.7128 46 1 19.0700 1.4719 -3.5992 47 1 17.5390 2.8429 -3.4606 48 1 15.4380 3.7501 -4.3671 49 1 13.3561 3.5724 -3.0663 50 1 6.4768 4.4859 1.1071 51 1 5.3787 5.0180 -0.2382 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17523010_4549614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:25:24 Heat of formation + Delta-G solvation = -146.294004 kcal Electronic energy + Delta-G solvation = -30786.226932 eV Core-core repulsion = 26232.342762 eV Total energy + Delta-G solvation = -4553.884169 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.64680 -41.43444 -41.11081 -39.68942 -39.06637 -37.64904 -37.37965 -35.11880 -33.65405 -32.81140 -32.48654 -30.80649 -29.11815 -27.22993 -26.86580 -26.60037 -25.36314 -23.69571 -23.26332 -22.21079 -21.64678 -21.41924 -20.24546 -19.39603 -18.64096 -18.22279 -17.75072 -17.70020 -17.53675 -17.48106 -17.14165 -17.02254 -16.82151 -16.24993 -16.02207 -15.92395 -15.52094 -15.29648 -15.04379 -14.90880 -14.57568 -14.40326 -14.32294 -14.23491 -14.12660 -13.95260 -13.43158 -13.38759 -13.22655 -13.04487 -12.94345 -12.86132 -12.63694 -12.39979 -12.13903 -11.96189 -11.87975 -11.84023 -11.81644 -11.65739 -11.56386 -11.27527 -11.09499 -11.04534 -10.65177 -10.08715 -9.95787 -9.27967 -4.89604 0.19266 0.38841 1.14555 1.30080 1.50365 1.62235 1.69536 1.77650 1.96954 2.48107 2.65231 3.42050 3.51870 3.54196 3.55859 3.64630 3.72391 3.82947 3.85406 3.87806 3.91376 3.98477 4.09203 4.20337 4.22951 4.24183 4.27731 4.27889 4.31382 4.39553 4.54755 4.55190 4.59944 4.63923 4.67764 4.69235 4.76655 4.78656 4.82746 4.89783 4.92055 4.97697 5.05763 5.13915 5.24529 5.25521 5.32628 5.37585 5.41580 5.43615 5.65028 5.69867 6.32453 6.47155 6.47578 6.68418 7.16571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.546 6.546 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.096 4.096 8 H 0.115 0.885 9 C -0.147 4.147 10 C 0.110 3.890 11 H 0.078 0.922 12 N -0.696 5.696 13 C 0.522 3.478 14 O -0.584 6.584 15 C -0.132 4.132 16 C 0.074 3.926 17 O -0.324 6.324 18 C 0.117 3.883 19 C -0.140 4.140 20 C -0.081 4.081 21 C -0.086 4.086 22 O -0.548 6.548 23 Si 0.775 3.225 24 C -0.159 4.159 25 C -0.076 4.076 26 C -0.211 4.211 27 C -0.135 4.135 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.419 0.581 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.386 0.614 45 H -0.302 1.302 46 H -0.280 1.280 47 H 0.146 0.854 48 H 0.151 0.849 49 H 0.136 0.864 50 H 0.086 0.914 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 -0.910 2.197 2.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.299 3.701 4 O -0.436 6.436 5 C -0.145 4.145 6 C -0.133 4.133 7 C -0.114 4.114 8 H 0.133 0.867 9 C -0.186 4.186 10 C 0.004 3.996 11 H 0.097 0.903 12 N -0.348 5.348 13 C 0.309 3.691 14 O -0.464 6.464 15 C -0.172 4.172 16 C -0.002 4.002 17 O -0.238 6.238 18 C 0.072 3.928 19 C -0.159 4.159 20 C -0.081 4.081 21 C -0.194 4.194 22 O -0.356 6.356 23 Si 0.680 3.320 24 C -0.176 4.176 25 C -0.094 4.094 26 C -0.229 4.229 27 C -0.173 4.173 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.257 0.743 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.235 0.765 45 H -0.230 1.230 46 H -0.207 1.207 47 H 0.164 0.836 48 H 0.169 0.831 49 H 0.154 0.846 50 H 0.105 0.895 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.263 -0.502 1.745 1.835 hybrid contribution -1.271 -1.000 -0.146 1.624 sum -1.533 -1.503 1.599 2.677 Atomic orbital electron populations 1.23485 0.75288 1.05480 1.02305 1.86516 1.24654 1.33577 1.83752 1.24662 0.93723 0.80777 0.70914 1.90676 1.68441 1.37492 1.47025 1.21561 0.84667 1.00458 1.07815 1.21365 0.95198 0.93784 1.03002 1.22581 0.93738 0.97662 0.97428 0.86693 1.23518 0.97938 0.99564 0.97556 1.21851 0.83995 0.96737 0.96991 0.90329 1.45509 1.06691 1.59625 1.22968 1.20636 0.85410 0.78264 0.84745 1.90741 1.86744 1.46176 1.22776 1.21434 0.89416 1.05580 1.00721 1.22442 0.82331 0.98835 0.96565 1.85950 1.15486 1.76559 1.45801 1.19138 0.86274 0.96196 0.91186 1.20341 0.89942 1.03795 1.01830 1.20149 0.95076 0.98239 0.94661 1.25332 1.01073 0.82756 1.10288 1.86575 1.93887 1.17993 1.37153 0.93870 0.73004 0.90673 0.74466 1.21205 0.99239 1.01341 0.95829 1.21236 0.91220 0.96842 1.00072 1.21552 1.00920 1.05124 0.95338 1.23330 0.96702 0.97543 0.99676 0.92120 0.92274 0.85451 0.85975 0.85176 0.91458 0.92123 0.89393 0.90920 0.74277 0.85468 0.85453 0.91643 0.91794 0.85320 0.85688 0.76451 1.23042 1.20673 0.83640 0.83081 0.84613 0.89512 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.79 10.57 -51.43 -0.54 -1.34 16 3 C 0.45 1.21 7.96 71.23 0.57 1.78 16 4 O -0.55 -5.34 15.73 21.96 0.35 -4.99 16 5 C -0.11 0.62 5.80 29.84 0.17 0.79 16 6 C -0.10 0.45 4.35 30.59 0.13 0.58 16 7 C -0.10 0.79 3.52 -10.27 -0.04 0.76 16 8 H 0.12 -1.39 8.13 -2.39 -0.02 -1.41 16 9 C -0.15 0.73 7.43 31.12 0.23 0.97 16 10 C 0.11 -0.35 4.32 45.52 0.20 -0.15 16 11 H 0.08 0.20 7.46 -2.39 -0.02 0.18 16 12 N -0.70 3.81 5.26 -440.03 -2.32 1.49 16 13 C 0.52 -0.06 7.83 87.66 0.69 0.63 16 14 O -0.58 -5.51 15.58 -3.04 -0.05 -5.56 16 15 C -0.13 0.63 6.07 29.85 0.18 0.81 16 16 C 0.07 0.07 4.03 71.98 0.29 0.36 16 17 O -0.32 -1.33 10.14 -92.40 -0.94 -2.27 16 18 C 0.12 0.59 6.69 22.51 0.15 0.74 16 19 C -0.14 -0.64 9.62 22.37 0.22 -0.43 16 20 C -0.08 -0.14 5.35 -19.88 -0.11 -0.25 16 21 C -0.09 -0.03 2.80 71.23 0.20 0.17 16 22 O -0.55 -1.94 12.83 -148.98 -1.91 -3.85 16 23 Si 0.77 -1.45 29.88 68.60 2.05 0.60 16 24 C -0.16 0.02 8.67 22.28 0.19 0.21 16 25 C -0.08 -0.02 10.04 22.25 0.22 0.20 16 26 C -0.21 -0.63 9.04 22.37 0.20 -0.42 16 27 C -0.13 0.90 7.39 31.12 0.23 1.13 16 28 H 0.06 -0.03 8.13 -2.38 -0.02 -0.05 16 29 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 30 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 31 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 32 H 0.13 -1.33 8.14 -2.39 -0.02 -1.35 16 33 H 0.07 -0.17 8.10 -2.39 -0.02 -0.19 16 34 H 0.06 -0.08 7.81 -2.39 -0.02 -0.10 16 35 H 0.09 -0.32 7.90 -2.38 -0.02 -0.34 16 36 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.42 -5.02 8.70 -92.71 -0.81 -5.82 16 38 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 39 H 0.13 -1.07 8.14 -2.38 -0.02 -1.09 16 40 H 0.07 0.15 7.61 -2.38 -0.02 0.13 16 41 H 0.06 0.15 7.62 -2.39 -0.02 0.13 16 42 H 0.13 0.60 8.06 -2.91 -0.02 0.58 16 43 H 0.13 -0.15 7.96 -2.39 -0.02 -0.17 16 44 H 0.39 -0.81 8.70 -74.06 -0.64 -1.45 16 45 H -0.30 -1.72 7.11 99.48 0.71 -1.02 16 46 H -0.28 -0.41 7.01 99.48 0.70 0.29 16 47 H 0.15 -0.61 4.84 -2.91 -0.01 -0.63 16 48 H 0.15 -0.67 8.06 -2.91 -0.02 -0.70 16 49 H 0.14 0.22 6.30 -2.91 -0.02 0.20 16 50 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 51 H 0.09 -0.51 8.10 -2.39 -0.02 -0.53 16 Total: 0.00 -25.47 424.18 1.10 -24.38 By element: Atomic # 1 Polarization: -17.02 SS G_CDS: -0.47 Total: -17.49 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.93 Total: 9.03 kcal Atomic # 7 Polarization: 3.81 SS G_CDS: -2.32 Total: 1.49 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -3.09 Total: -18.01 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: 2.05 Total: 0.60 kcal Total: -25.47 1.10 -24.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17523010_4549614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.919 kcal (2) G-P(sol) polarization free energy of solvation -25.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds