Wall clock time and date at job start Sun Mar 7 2021 08:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99853 * 2 1 4 4 O 1.20823 * 120.00152 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99673 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.47069 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47380 * 180.02562 * 6 5 3 8 8 H 1.09004 * 112.89977 * 316.24931 * 7 6 5 9 9 C 1.53774 * 113.61649 * 87.50192 * 7 6 5 10 10 C 1.53782 * 87.08161 * 139.98421 * 9 7 6 11 11 H 1.09002 * 113.68975 * 220.00709 * 10 9 7 12 12 N 1.46498 * 113.61718 * 89.11276 * 10 9 7 13 13 C 1.34777 * 119.99828 * 107.22525 * 12 10 9 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 10 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 10 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47353 * 179.97438 * 16 15 13 18 18 O 1.42901 * 109.47882 * 180.02562 * 17 16 15 19 19 C 1.35889 * 117.00717 * 180.02562 * 18 17 16 20 20 C 1.38714 * 120.05838 * 180.02562 * 19 18 17 21 21 C 1.38173 * 119.94412 * 180.02562 * 20 19 18 22 22 C 1.50691 * 119.97094 * 180.02562 * 21 20 19 23 23 O 1.42899 * 109.47577 * 299.99921 * 22 21 20 24 24 Si 1.86301 * 109.47400 * 179.97438 * 22 21 20 25 25 C 1.38243 * 120.05396 * 359.97438 * 21 20 19 26 26 C 1.38290 * 120.11407 * 0.02562 * 25 21 20 27 27 C 1.38119 * 120.05301 * 359.67915 * 26 25 21 28 28 C 1.53781 * 87.08215 * 334.56639 * 10 9 7 29 29 H 1.08991 * 109.47108 * 60.00091 * 1 2 3 30 30 H 1.08999 * 109.47382 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46870 * 299.99945 * 1 2 3 32 32 H 1.09004 * 109.46544 * 59.99842 * 5 3 2 33 33 H 1.08996 * 109.47219 * 300.00196 * 5 3 2 34 34 H 1.09003 * 109.47609 * 59.99812 * 6 5 3 35 35 H 1.09005 * 109.47492 * 300.00052 * 6 5 3 36 36 H 1.08999 * 113.61704 * 25.43209 * 9 7 6 37 37 H 1.09006 * 113.61200 * 254.52894 * 9 7 6 38 38 H 0.97001 * 120.00384 * 287.50972 * 12 10 9 39 39 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 40 40 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 41 41 H 1.08998 * 109.47508 * 300.00200 * 16 15 13 42 42 H 1.09011 * 109.47182 * 60.00188 * 16 15 13 43 43 H 1.08999 * 109.47616 * 300.00389 * 17 16 15 44 44 H 1.09003 * 109.47280 * 60.00024 * 17 16 15 45 45 H 1.07992 * 120.02932 * 359.96807 * 20 19 18 46 46 H 1.09007 * 109.47543 * 59.99924 * 22 21 20 47 47 H 0.96702 * 113.99470 * 300.00519 * 23 22 21 48 48 H 1.48502 * 109.99766 * 58.67634 * 24 22 21 49 49 H 1.48497 * 110.00351 * 180.02562 * 24 22 21 50 50 H 1.08005 * 119.94251 * 180.02562 * 25 21 20 51 51 H 1.07999 * 119.97005 * 179.97438 * 26 25 21 52 52 H 1.08004 * 120.03047 * 180.31667 * 27 26 25 53 53 H 1.08995 * 113.61890 * 139.98284 * 28 10 9 54 54 H 1.09004 * 113.61421 * 270.80580 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7419 -0.0011 7 6 5.5281 2.8220 -0.0023 8 1 5.9902 2.1200 0.6917 9 6 6.1454 2.7928 -1.4104 10 6 7.1378 3.8565 -0.9120 11 1 7.3499 4.6352 -1.6447 12 7 8.3504 3.2931 -0.3134 13 6 9.5221 3.3587 -0.9762 14 8 9.5736 3.8886 -2.0659 15 6 10.7684 2.7736 -0.3633 16 6 11.9495 2.9805 -1.3133 17 6 13.2149 2.3871 -0.6908 18 8 14.3183 2.5809 -1.5779 19 6 15.5261 2.1079 -1.1728 20 6 16.6404 2.2622 -1.9844 21 6 17.8673 1.7799 -1.5704 22 6 19.0783 1.9477 -2.4513 23 8 18.8531 1.2921 -3.7009 24 14 20.5639 1.1971 -1.6144 25 6 17.9849 1.1445 -0.3483 26 6 16.8755 0.9894 0.4627 27 6 15.6481 1.4752 0.0561 28 6 6.0699 4.2561 0.1199 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9556 0.7808 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 3.6108 3.2364 0.8889 35 1 3.6101 3.2359 -0.8911 36 1 5.4735 3.1534 -2.1893 37 1 6.6146 1.8416 -1.6618 38 1 8.3093 2.8693 0.5581 39 1 10.9742 3.2698 0.5852 40 1 10.6224 1.7072 -0.1912 41 1 11.7440 2.4847 -2.2620 42 1 12.0953 4.0471 -1.4850 43 1 13.4203 2.8833 0.2577 44 1 13.0695 1.3206 -0.5188 45 1 16.5490 2.7580 -2.9394 46 1 19.2572 3.0089 -2.6249 47 1 18.6866 0.3427 -3.6224 48 1 20.3205 -0.2425 -1.3430 49 1 21.7651 1.3566 -2.4728 50 1 18.9448 0.7686 -0.0263 51 1 16.9699 0.4923 1.4168 52 1 14.7830 1.3584 0.6920 53 1 6.4781 4.4862 1.1040 54 1 5.3782 5.0177 -0.2401 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17523010_4549616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:25:27 Heat of formation + Delta-G solvation = -153.922703 kcal Electronic energy + Delta-G solvation = -32354.799626 eV Core-core repulsion = 27645.047032 eV Total energy + Delta-G solvation = -4709.752594 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.61733 -41.32976 -41.15386 -39.64043 -39.16099 -37.64936 -37.41318 -35.08037 -34.88055 -33.17838 -32.45646 -31.21048 -29.22476 -28.36926 -26.96497 -26.72198 -26.47731 -23.94964 -23.63342 -23.03569 -21.90313 -21.63472 -21.38482 -20.22702 -19.22543 -18.64473 -18.15758 -17.90657 -17.69924 -17.53689 -17.44881 -17.17097 -16.95187 -16.79929 -16.39907 -16.15889 -15.90465 -15.54190 -15.35716 -15.15011 -14.84364 -14.68809 -14.59995 -14.39090 -14.19356 -14.10205 -14.08170 -13.47887 -13.42066 -13.26156 -13.20955 -13.07838 -13.01921 -12.72803 -12.63364 -12.31227 -12.27445 -12.13271 -11.93728 -11.87632 -11.83913 -11.65531 -11.59297 -11.54805 -11.27064 -11.07584 -10.94788 -10.67780 -10.04008 -9.90784 -9.22975 -4.90507 0.23039 0.42603 1.14719 1.29969 1.61226 1.62556 1.77700 1.91163 1.99837 2.39418 2.69360 3.40009 3.52281 3.54894 3.62615 3.67918 3.72735 3.85734 3.87405 3.87860 3.91719 3.99708 4.13021 4.20653 4.22364 4.24230 4.26888 4.27901 4.31388 4.36644 4.43715 4.46393 4.55105 4.56814 4.60243 4.65395 4.69279 4.69879 4.80060 4.82359 4.90557 4.92738 5.00678 5.02384 5.05698 5.14265 5.18188 5.24991 5.30578 5.34242 5.40405 5.42669 5.46910 5.67800 5.76534 6.44888 6.46326 6.56330 6.68571 7.27997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.454 3.546 4 O -0.547 6.547 5 C -0.107 4.107 6 C -0.096 4.096 7 C -0.093 4.093 8 H 0.118 0.882 9 C -0.148 4.148 10 C 0.108 3.892 11 H 0.072 0.928 12 N -0.698 5.698 13 C 0.509 3.491 14 O -0.592 6.592 15 C -0.126 4.126 16 C -0.103 4.103 17 C 0.058 3.942 18 O -0.340 6.340 19 C 0.116 3.884 20 C -0.153 4.153 21 C -0.082 4.082 22 C -0.093 4.093 23 O -0.551 6.551 24 Si 0.783 3.217 25 C -0.160 4.160 26 C -0.072 4.072 27 C -0.205 4.205 28 C -0.134 4.134 29 H 0.058 0.942 30 H 0.128 0.872 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.420 0.580 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.120 0.880 47 H 0.386 0.614 48 H -0.277 1.277 49 H -0.304 1.304 50 H 0.148 0.852 51 H 0.160 0.840 52 H 0.154 0.846 53 H 0.088 0.912 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 -5.423 10.728 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.299 3.701 4 O -0.437 6.437 5 C -0.144 4.144 6 C -0.134 4.134 7 C -0.111 4.111 8 H 0.136 0.864 9 C -0.187 4.187 10 C 0.002 3.998 11 H 0.090 0.910 12 N -0.351 5.351 13 C 0.298 3.702 14 O -0.472 6.472 15 C -0.165 4.165 16 C -0.141 4.141 17 C -0.016 4.016 18 O -0.255 6.255 19 C 0.071 3.929 20 C -0.172 4.172 21 C -0.083 4.083 22 C -0.201 4.201 23 O -0.359 6.359 24 Si 0.687 3.313 25 C -0.178 4.178 26 C -0.090 4.090 27 C -0.223 4.223 28 C -0.172 4.172 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.257 0.743 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.132 0.868 46 H 0.138 0.862 47 H 0.235 0.765 48 H -0.204 1.204 49 H -0.233 1.233 50 H 0.165 0.835 51 H 0.177 0.823 52 H 0.172 0.828 53 H 0.106 0.894 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.095 -4.654 9.524 10.600 hybrid contribution -1.334 -0.469 -1.036 1.753 sum -1.239 -5.122 8.488 9.991 Atomic orbital electron populations 1.23484 0.75300 1.05487 1.02292 1.86514 1.24640 1.33556 1.83748 1.24671 0.93737 0.80775 0.70904 1.90677 1.68455 1.37517 1.47039 1.21560 0.84642 1.00388 1.07859 1.21370 0.95230 0.93850 1.02953 1.22567 0.93686 0.97609 0.97271 0.86420 1.23513 0.97988 0.99565 0.97622 1.21820 0.84348 0.96652 0.96972 0.90974 1.45557 1.06812 1.59848 1.22843 1.21240 0.85938 0.78267 0.84795 1.90742 1.86751 1.46360 1.23333 1.21531 0.89504 1.05051 1.00430 1.21158 0.92014 1.01727 0.99194 1.22998 0.83622 1.02081 0.92924 1.86052 1.15870 1.76077 1.47473 1.19200 0.85106 0.94670 0.93935 1.20326 0.91140 1.05172 1.00599 1.20133 0.94410 0.97850 0.95875 1.25440 1.03071 1.03730 0.87841 1.86575 1.93004 1.26988 1.29330 0.93891 0.72456 0.80018 0.84952 1.21189 1.00121 1.02082 0.94360 1.21313 0.91049 0.96481 1.00165 1.21611 1.00791 1.03743 0.96183 1.23322 0.96681 0.97548 0.99662 0.92327 0.85426 0.92105 0.86028 0.85000 0.91385 0.92313 0.89721 0.90938 0.74255 0.85257 0.85203 0.92350 0.92302 0.89662 0.89808 0.86754 0.86220 0.76475 1.20370 1.23295 0.83465 0.82266 0.82796 0.89363 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.74 10.57 -51.38 -0.54 -1.29 16 3 C 0.45 1.19 7.96 71.24 0.57 1.76 16 4 O -0.55 -5.39 15.73 21.97 0.35 -5.05 16 5 C -0.11 0.63 5.80 29.85 0.17 0.80 16 6 C -0.10 0.44 4.34 30.59 0.13 0.57 16 7 C -0.09 0.76 3.53 -10.27 -0.04 0.72 16 8 H 0.12 -1.48 8.13 -2.39 -0.02 -1.50 16 9 C -0.15 0.61 7.43 31.12 0.23 0.85 16 10 C 0.11 -0.23 4.32 45.52 0.20 -0.03 16 11 H 0.07 0.33 7.47 -2.39 -0.02 0.31 16 12 N -0.70 3.71 5.26 -440.03 -2.32 1.39 16 13 C 0.51 0.24 7.83 87.66 0.69 0.92 16 14 O -0.59 -7.25 15.58 -3.04 -0.05 -7.30 16 15 C -0.13 0.96 5.70 29.85 0.17 1.13 16 16 C -0.10 0.05 4.87 30.59 0.15 0.19 16 17 C 0.06 -0.17 4.74 71.98 0.34 0.17 16 18 O -0.34 -1.98 10.14 -92.30 -0.94 -2.92 16 19 C 0.12 0.53 6.69 22.51 0.15 0.68 16 20 C -0.15 -0.96 9.55 22.37 0.21 -0.75 16 21 C -0.08 -0.19 5.39 -19.88 -0.11 -0.30 16 22 C -0.09 -0.15 2.82 71.23 0.20 0.06 16 23 O -0.55 -2.91 12.77 -148.98 -1.90 -4.81 16 24 Si 0.78 -1.39 29.79 68.60 2.04 0.65 16 25 C -0.16 0.25 8.67 22.28 0.19 0.45 16 26 C -0.07 0.23 10.04 22.25 0.22 0.46 16 27 C -0.20 0.27 9.04 22.37 0.20 0.47 16 28 C -0.13 0.83 7.39 31.12 0.23 1.06 16 29 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 30 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 31 H 0.06 -0.04 8.13 -2.38 -0.02 -0.06 16 32 H 0.12 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H 0.13 -1.41 8.14 -2.39 -0.02 -1.43 16 34 H 0.07 -0.17 8.10 -2.39 -0.02 -0.19 16 35 H 0.06 -0.04 7.80 -2.38 -0.02 -0.06 16 36 H 0.08 -0.20 7.89 -2.39 -0.02 -0.22 16 37 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 38 H 0.42 -5.36 8.70 -92.71 -0.81 -6.16 16 39 H 0.13 -1.72 8.14 -2.39 -0.02 -1.74 16 40 H 0.13 -1.75 8.14 -2.39 -0.02 -1.77 16 41 H 0.06 0.26 8.10 -2.39 -0.02 0.24 16 42 H 0.06 0.26 8.10 -2.38 -0.02 0.24 16 43 H 0.09 -0.61 7.65 -2.39 -0.02 -0.63 16 44 H 0.08 -0.59 7.67 -2.39 -0.02 -0.61 16 45 H 0.11 1.02 8.06 -2.91 -0.02 0.99 16 46 H 0.12 0.10 7.96 -2.38 -0.02 0.08 16 47 H 0.39 -0.28 8.70 -74.06 -0.64 -0.92 16 48 H -0.28 -0.31 7.11 99.48 0.71 0.40 16 49 H -0.30 -1.86 7.11 99.48 0.71 -1.16 16 50 H 0.15 -0.90 4.88 -2.91 -0.01 -0.91 16 51 H 0.16 -1.48 8.06 -2.91 -0.02 -1.51 16 52 H 0.15 -1.08 6.30 -2.91 -0.02 -1.10 16 53 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 54 H 0.09 -0.41 8.10 -2.39 -0.02 -0.43 16 Total: 0.00 -31.39 445.63 1.26 -30.12 By element: Atomic # 1 Polarization: -20.67 SS G_CDS: -0.50 Total: -21.17 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.11 Total: 10.36 kcal Atomic # 7 Polarization: 3.71 SS G_CDS: -2.32 Total: 1.39 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -3.08 Total: -21.36 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.04 Total: 0.65 kcal Total: -31.39 1.26 -30.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17523010_4549616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.799 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds