Wall clock time and date at job start Sun Mar 7 2021 08:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 116.99384 * 2 1 4 4 O 1.20815 * 120.00473 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99318 * 179.97438 * 3 2 1 6 6 C 1.53008 * 109.47032 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47321 * 179.97438 * 6 5 3 8 8 H 1.09002 * 112.84772 * 43.80799 * 7 6 5 9 9 C 1.53773 * 113.61450 * 175.00133 * 7 6 5 10 10 C 1.53779 * 87.08160 * 140.06598 * 9 7 6 11 11 H 1.09002 * 113.61666 * 219.93271 * 10 9 7 12 12 N 1.46502 * 113.61268 * 89.11815 * 10 9 7 13 13 C 1.34777 * 119.99764 * 155.00127 * 12 10 9 14 14 O 1.21608 * 120.00158 * 359.97438 * 13 12 10 15 15 C 1.47378 * 119.99615 * 179.97438 * 13 12 10 16 16 C 1.36411 * 127.19185 * 179.97438 * 15 13 12 17 17 C 1.50702 * 125.80288 * 359.97438 * 16 15 13 18 18 O 1.42895 * 109.47255 * 90.01604 * 17 16 15 19 19 C 1.35904 * 117.00093 * 180.02562 * 18 17 16 20 20 C 1.38733 * 120.05603 * 359.73104 * 19 18 17 21 21 C 1.38146 * 119.94317 * 179.73946 * 20 19 18 22 22 C 1.38270 * 120.05358 * 0.51074 * 21 20 19 23 23 C 1.50699 * 119.93977 * 179.74025 * 22 21 20 24 24 O 1.42902 * 109.46977 * 245.01987 * 23 22 21 25 25 Si 1.86295 * 109.47327 * 5.02355 * 23 22 21 26 26 C 1.38260 * 120.11144 * 359.76667 * 22 21 20 27 27 C 1.38142 * 120.05921 * 359.97438 * 26 22 21 28 28 O 1.33658 * 108.40014 * 180.02562 * 16 15 13 29 29 C 1.34209 * 110.90640 * 359.97438 * 28 16 15 30 30 C 1.34184 * 109.12515 * 359.97438 * 29 28 16 31 31 C 1.53773 * 87.07996 * 334.56995 * 10 9 7 32 32 H 1.09005 * 109.47039 * 60.00266 * 1 2 3 33 33 H 1.09000 * 109.46895 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47161 * 300.00013 * 1 2 3 35 35 H 1.09005 * 109.47110 * 60.00510 * 5 3 2 36 36 H 1.08997 * 109.47598 * 300.00074 * 5 3 2 37 37 H 1.08997 * 109.46567 * 60.00066 * 6 5 3 38 38 H 1.08997 * 109.47093 * 300.00510 * 6 5 3 39 39 H 1.09005 * 113.61248 * 25.51873 * 9 7 6 40 40 H 1.09000 * 113.69204 * 254.62740 * 9 7 6 41 41 H 0.96996 * 120.00080 * 334.99606 * 12 10 9 42 42 H 1.09004 * 109.47482 * 210.02190 * 17 16 15 43 43 H 1.09008 * 109.46623 * 330.02036 * 17 16 15 44 44 H 1.08002 * 120.02721 * 359.97438 * 20 19 18 45 45 H 1.07999 * 119.97151 * 180.27418 * 21 20 19 46 46 H 1.09004 * 109.46805 * 125.02322 * 23 22 21 47 47 H 0.96701 * 113.99889 * 60.00940 * 24 23 22 48 48 H 1.48503 * 109.99889 * 58.67922 * 25 23 22 49 49 H 1.48502 * 110.00222 * 179.97438 * 25 23 22 50 50 H 1.08006 * 119.97077 * 179.97438 * 26 22 21 51 51 H 1.07999 * 120.02817 * 179.97438 * 27 26 22 52 52 H 1.07998 * 125.43748 * 180.02562 * 29 28 16 53 53 H 1.07999 * 127.02209 * 179.73888 * 30 29 28 54 54 H 1.09002 * 113.61930 * 139.98644 * 31 10 9 55 55 H 1.09001 * 113.61711 * 270.88006 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0001 2.7423 -0.0002 7 6 5.5280 2.8224 0.0011 8 1 5.9892 2.1201 -0.6934 9 6 6.0697 4.2562 -0.1224 10 6 7.1389 3.8570 0.9083 11 1 7.3520 4.6359 1.6404 12 7 8.3508 3.2933 0.3083 13 6 9.5244 3.3640 0.9672 14 8 9.5775 3.8961 2.0594 15 6 10.7434 2.7965 0.3639 16 6 11.9993 2.7867 0.8962 17 6 12.3959 3.3652 2.2301 18 8 12.2623 2.3649 3.2418 19 6 12.5822 2.7258 4.5124 20 6 13.0210 4.0146 4.7790 21 6 13.3404 4.3805 6.0723 22 6 13.2330 3.4605 7.0988 23 6 13.5877 3.8607 8.5077 24 8 14.7264 3.1148 8.9425 25 14 13.9824 5.6808 8.5556 26 6 12.8014 2.1738 6.8348 27 6 12.4757 1.8044 5.5441 28 8 12.8186 2.1780 0.0333 29 6 12.1512 1.7789 -1.0605 30 6 10.8598 2.1217 -0.9371 31 6 6.1471 2.7936 1.4083 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 3.9563 0.7807 -0.8892 36 1 3.9557 0.7810 0.8908 37 1 3.6099 3.2368 0.8893 38 1 3.6106 3.2358 -0.8906 39 1 5.3776 5.0170 0.2388 40 1 6.4768 4.4874 -1.1067 41 1 8.3084 2.8692 -0.5629 42 1 13.4317 3.7020 2.1866 43 1 11.7488 4.2099 2.4667 44 1 13.1093 4.7323 3.9768 45 1 13.6779 5.3850 6.2811 46 1 12.7447 3.6543 9.1672 47 1 15.5156 3.2500 8.4003 48 1 12.8169 6.4660 8.0755 49 1 14.3332 6.0883 9.9399 50 1 12.7188 1.4568 7.6383 51 1 12.1390 0.7991 5.3383 52 1 12.5843 1.2633 -1.9049 53 1 10.0687 1.9435 -1.6504 54 1 6.6166 1.8424 1.6595 55 1 5.4763 3.1544 2.1880 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17523010_4549634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:25:42 Heat of formation + Delta-G solvation = -118.735346 kcal Electronic energy + Delta-G solvation = -38539.628679 eV Core-core repulsion = 33283.578929 eV Total energy + Delta-G solvation = -5256.049750 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.181 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.71000 -41.60958 -41.30917 -41.14425 -39.48783 -39.18365 -37.65292 -37.18177 -35.20394 -34.17473 -33.12003 -32.72789 -31.99235 -31.38853 -29.17175 -28.01323 -26.95847 -26.62358 -26.16550 -24.84866 -23.81902 -23.28137 -22.44099 -22.21408 -21.63072 -20.98069 -20.19226 -19.50963 -19.18877 -18.63187 -18.26088 -17.70524 -17.55387 -17.45453 -17.21003 -17.09898 -16.95949 -16.67432 -16.41568 -16.07438 -15.95726 -15.85840 -15.67206 -15.41439 -15.20746 -14.94615 -14.67572 -14.54228 -14.42285 -14.36044 -14.18098 -14.11647 -13.84437 -13.69982 -13.49046 -13.44837 -13.40130 -13.10310 -13.04102 -12.66429 -12.28262 -12.15477 -12.08710 -12.07047 -11.88896 -11.84541 -11.78077 -11.66753 -11.29739 -11.17851 -11.09003 -10.96016 -10.41644 -10.13877 -10.07010 -9.81421 -9.25532 -5.01374 -0.03786 0.25616 0.28005 1.04577 1.13969 1.32261 1.51846 1.63801 1.76925 1.96114 2.02990 2.11227 2.46698 2.63280 3.35148 3.49847 3.51731 3.55473 3.59805 3.68603 3.70642 3.71866 3.79349 3.86606 3.87169 3.90809 3.94684 4.11341 4.19231 4.23552 4.27017 4.28050 4.30071 4.41113 4.46848 4.48612 4.51206 4.56855 4.61923 4.64992 4.68625 4.77709 4.80725 4.81631 4.87870 4.90178 4.94148 5.03403 5.11731 5.12886 5.22414 5.23841 5.28048 5.31371 5.40428 5.46260 5.62081 5.67289 5.89825 6.24857 6.44881 6.67850 6.79198 7.11205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.545 6.545 5 C -0.109 4.109 6 C -0.095 4.095 7 C -0.095 4.095 8 H 0.114 0.886 9 C -0.132 4.132 10 C 0.111 3.889 11 H 0.080 0.920 12 N -0.688 5.688 13 C 0.585 3.415 14 O -0.573 6.573 15 C -0.224 4.224 16 C 0.041 3.959 17 C 0.134 3.866 18 O -0.322 6.322 19 C 0.125 3.875 20 C -0.205 4.205 21 C -0.074 4.074 22 C -0.162 4.162 23 C -0.068 4.068 24 O -0.556 6.556 25 Si 0.775 3.225 26 C -0.059 4.059 27 C -0.163 4.163 28 O -0.177 6.177 29 C -0.012 4.012 30 C -0.196 4.196 31 C -0.148 4.148 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.058 0.942 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.416 0.584 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.105 0.895 47 H 0.395 0.605 48 H -0.289 1.289 49 H -0.298 1.298 50 H 0.138 0.862 51 H 0.133 0.867 52 H 0.252 0.748 53 H 0.193 0.807 54 H 0.067 0.933 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -2.210 -8.394 9.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.436 6.436 5 C -0.146 4.146 6 C -0.133 4.133 7 C -0.113 4.113 8 H 0.132 0.868 9 C -0.170 4.170 10 C 0.006 3.994 11 H 0.098 0.902 12 N -0.339 5.339 13 C 0.374 3.626 14 O -0.454 6.454 15 C -0.228 4.228 16 C -0.012 4.012 17 C 0.060 3.940 18 O -0.237 6.237 19 C 0.080 3.920 20 C -0.224 4.224 21 C -0.092 4.092 22 C -0.162 4.162 23 C -0.178 4.178 24 O -0.364 6.364 25 Si 0.681 3.319 26 C -0.077 4.077 27 C -0.181 4.181 28 O -0.072 6.072 29 C -0.077 4.077 30 C -0.214 4.214 31 C -0.187 4.187 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.254 0.746 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.167 0.833 45 H 0.169 0.831 46 H 0.122 0.878 47 H 0.245 0.755 48 H -0.216 1.216 49 H -0.226 1.226 50 H 0.156 0.844 51 H 0.151 0.849 52 H 0.268 0.732 53 H 0.210 0.790 54 H 0.086 0.914 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.797 -1.205 -6.904 7.235 hybrid contribution -1.232 -0.438 -0.215 1.325 sum 0.565 -1.643 -7.119 7.328 Atomic orbital electron populations 1.23488 0.75270 1.05494 1.02309 1.86519 1.24670 1.33559 1.83755 1.24631 0.93670 0.80793 0.70931 1.90672 1.68417 1.37469 1.46998 1.21562 0.84751 1.00479 1.07768 1.21361 0.95000 0.93789 1.03115 1.22566 0.93863 0.97666 0.97170 0.86772 1.23329 0.96468 0.97568 0.99599 1.21879 0.83669 0.96747 0.97155 0.90187 1.45290 1.06431 1.59492 1.22664 1.17458 0.83179 0.78040 0.83964 1.90778 1.86396 1.46377 1.21873 1.21356 0.93203 1.09193 0.99090 1.22040 0.88515 0.98404 0.92287 1.21152 1.03773 0.89573 0.79504 1.86047 1.83107 1.39780 1.14730 1.19177 0.95224 0.94073 0.83560 1.21430 1.06254 0.95543 0.99150 1.21013 0.97336 0.99261 0.91565 1.20350 1.04666 0.94976 0.96228 1.25100 0.91142 1.08906 0.92680 1.86462 1.21749 1.70552 1.57626 0.93822 0.85557 0.72023 0.80459 1.20943 0.95137 0.96103 0.95482 1.20621 1.06078 1.00075 0.91370 1.83796 1.39516 1.57669 1.26238 1.24924 0.91723 1.01029 0.90054 1.23257 0.98932 1.03049 0.96198 1.23524 0.97950 0.99417 0.97799 0.92075 0.85433 0.92305 0.85119 0.86166 0.92096 0.91214 0.88483 0.89374 0.74617 0.87902 0.87670 0.83343 0.83124 0.87772 0.75502 1.21642 1.22560 0.84385 0.84915 0.73176 0.78950 0.91374 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.96 10.57 -51.46 -0.54 -1.50 16 3 C 0.45 1.43 7.96 71.24 0.57 2.00 16 4 O -0.55 -5.53 15.73 22.00 0.35 -5.18 16 5 C -0.11 0.54 5.80 29.85 0.17 0.71 16 6 C -0.10 0.38 4.34 30.60 0.13 0.51 16 7 C -0.09 0.66 3.52 -10.27 -0.04 0.63 16 8 H 0.11 -1.24 8.13 -2.39 -0.02 -1.26 16 9 C -0.13 0.73 7.39 31.12 0.23 0.96 16 10 C 0.11 -0.10 4.32 45.51 0.20 0.09 16 11 H 0.08 0.36 7.46 -2.39 -0.02 0.34 16 12 N -0.69 1.03 5.26 -443.36 -2.33 -1.30 16 13 C 0.58 3.32 7.81 86.65 0.68 4.00 16 14 O -0.57 -7.68 14.44 -4.05 -0.06 -7.73 16 15 C -0.22 -0.65 6.31 -18.99 -0.12 -0.77 16 16 C 0.04 0.18 7.00 25.26 0.18 0.36 16 17 C 0.13 0.61 4.74 71.24 0.34 0.94 16 18 O -0.32 -2.92 10.12 -92.47 -0.94 -3.86 16 19 C 0.12 0.93 6.69 22.51 0.15 1.08 16 20 C -0.21 -0.72 9.04 22.37 0.20 -0.52 16 21 C -0.07 -0.11 8.66 22.26 0.19 0.08 16 22 C -0.16 -0.48 5.35 -19.85 -0.11 -0.59 16 23 C -0.07 -0.10 2.80 71.24 0.20 0.10 16 24 O -0.56 -1.00 12.83 -148.98 -1.91 -2.91 16 25 Si 0.77 -0.42 29.80 68.60 2.04 1.62 16 26 C -0.06 -0.28 9.68 22.25 0.22 -0.06 16 27 C -0.16 -1.10 9.99 22.37 0.22 -0.87 16 28 O -0.18 -0.30 10.52 4.48 0.05 -0.25 16 29 C -0.01 0.06 12.03 66.89 0.80 0.87 16 30 C -0.20 0.96 10.60 23.65 0.25 1.21 16 31 C -0.15 0.42 7.43 31.12 0.23 0.65 16 32 H 0.06 -0.02 8.13 -2.38 -0.02 -0.04 16 33 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 35 H 0.13 -1.26 8.14 -2.38 -0.02 -1.28 16 36 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.06 -0.04 7.81 -2.39 -0.02 -0.05 16 38 H 0.07 -0.16 8.10 -2.39 -0.02 -0.18 16 39 H 0.10 -0.46 8.10 -2.38 -0.02 -0.48 16 40 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.42 -3.31 7.87 -92.71 -0.73 -4.04 16 42 H 0.10 -0.07 7.65 -2.38 -0.02 -0.09 16 43 H 0.11 0.63 6.02 -2.38 -0.01 0.61 16 44 H 0.15 -0.11 6.30 -2.91 -0.02 -0.12 16 45 H 0.15 -0.56 4.90 -2.91 -0.01 -0.58 16 46 H 0.10 0.30 7.96 -2.38 -0.02 0.28 16 47 H 0.40 -2.51 8.70 -74.06 -0.64 -3.16 16 48 H -0.29 -1.38 7.11 99.48 0.71 -0.67 16 49 H -0.30 -1.97 7.11 99.48 0.71 -1.26 16 50 H 0.14 0.39 8.06 -2.91 -0.02 0.36 16 51 H 0.13 0.73 8.06 -2.91 -0.02 0.70 16 52 H 0.25 -3.65 8.06 -2.91 -0.02 -3.67 16 53 H 0.19 -2.39 7.74 -2.91 -0.02 -2.41 16 54 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 55 H 0.09 -0.17 7.90 -2.39 -0.02 -0.19 16 Total: 0.00 -30.43 461.30 2.16 -28.26 By element: Atomic # 1 Polarization: -19.31 SS G_CDS: -0.39 Total: -19.70 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.90 Total: 12.56 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: -2.33 Total: -1.30 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -3.06 Total: -21.44 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: 2.04 Total: 1.62 kcal Total: -30.43 2.16 -28.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17523010_4549634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.472 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds