Wall clock time and date at job start Sun Mar 7 2021 08:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 116.99379 * 2 1 4 4 O 1.20823 * 120.00640 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99498 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.46959 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47132 * 180.02562 * 6 5 3 8 8 H 1.08996 * 112.85052 * 43.80750 * 7 6 5 9 9 C 1.53785 * 113.61866 * 175.00373 * 7 6 5 10 10 C 1.53776 * 87.08365 * 140.06623 * 9 7 6 11 11 H 1.09005 * 113.61425 * 219.93604 * 10 9 7 12 12 N 1.46502 * 113.61271 * 89.11758 * 10 9 7 13 13 C 1.34781 * 119.99860 * 155.00055 * 12 10 9 14 14 O 1.21279 * 119.99917 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00019 * 180.02562 * 13 12 10 16 16 O 1.42902 * 109.47132 * 180.02562 * 15 13 12 17 17 C 1.35987 * 116.99915 * 179.97438 * 16 15 13 18 18 C 1.39150 * 120.07552 * 179.97438 * 17 16 15 19 19 O 1.36001 * 120.07311 * 0.04094 * 18 17 16 20 20 C 1.42890 * 117.00645 * 180.02562 * 19 18 17 21 21 C 1.38562 * 119.86093 * 180.02562 * 18 17 16 22 22 C 1.38247 * 119.99672 * 359.97438 * 21 18 17 23 23 C 1.50696 * 119.92710 * 180.02562 * 22 21 18 24 24 O 1.42901 * 109.47227 * 255.00311 * 23 22 21 25 25 Si 1.86302 * 109.47260 * 15.00491 * 23 22 21 26 26 C 1.38255 * 120.14202 * 359.72841 * 22 21 18 27 27 N 1.48012 * 119.92356 * 180.27265 * 26 22 21 28 28 O 1.21795 * 119.99772 * 180.28147 * 27 26 22 29 29 O 1.21800 * 119.99808 * 0.27950 * 27 26 22 30 30 C 1.38238 * 120.15035 * 0.55875 * 26 22 21 31 31 C 1.53779 * 113.69414 * 272.54062 * 7 6 5 32 32 H 1.09000 * 109.46717 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47065 * 299.99926 * 1 2 3 34 34 H 1.08999 * 109.47012 * 60.00379 * 1 2 3 35 35 H 1.09005 * 109.46554 * 60.00409 * 5 3 2 36 36 H 1.08991 * 109.47192 * 300.00161 * 5 3 2 37 37 H 1.09005 * 109.46970 * 60.00889 * 6 5 3 38 38 H 1.08996 * 109.48042 * 300.00628 * 6 5 3 39 39 H 1.09005 * 113.61203 * 25.51668 * 9 7 6 40 40 H 1.09002 * 113.69121 * 254.63061 * 9 7 6 41 41 H 0.96991 * 120.00196 * 335.00239 * 12 10 9 42 42 H 1.08998 * 109.47025 * 59.99533 * 15 13 12 43 43 H 1.09004 * 109.46797 * 299.99572 * 15 13 12 44 44 H 1.08995 * 109.48026 * 180.02562 * 20 19 18 45 45 H 1.09005 * 109.47338 * 300.00459 * 20 19 18 46 46 H 1.09004 * 109.47528 * 59.99488 * 20 19 18 47 47 H 1.08000 * 120.00595 * 180.02562 * 21 18 17 48 48 H 1.09000 * 109.46772 * 135.00456 * 23 22 21 49 49 H 0.96704 * 113.99897 * 60.00515 * 24 23 22 50 50 H 1.48505 * 109.99884 * 58.68036 * 25 23 22 51 51 H 1.48494 * 110.00187 * 179.97438 * 25 23 22 52 52 H 1.08002 * 120.00519 * 179.72186 * 30 26 22 53 53 H 1.08998 * 113.61751 * 105.45921 * 31 7 6 54 54 H 1.09006 * 113.61409 * 334.55496 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7421 -0.0002 7 6 5.5279 2.8223 -0.0002 8 1 5.9886 2.1202 -0.6952 9 6 6.0697 4.2562 -0.1237 10 6 7.1397 3.8567 0.9059 11 1 7.3534 4.6354 1.6381 12 7 8.3510 3.2931 0.3047 13 6 9.5253 3.3636 0.9626 14 8 9.5790 3.8931 2.0523 15 6 10.7715 2.7844 0.3440 16 8 11.8774 2.9811 1.2273 17 6 13.0863 2.5127 0.8168 18 6 14.2068 2.6703 1.6267 19 8 14.0953 3.2925 2.8309 20 6 15.2873 3.4192 3.6086 21 6 15.4365 2.1918 1.2038 22 6 15.5481 1.5589 -0.0203 23 6 16.8861 1.0386 -0.4784 24 8 17.4134 1.9029 -1.4869 25 14 18.0593 0.9836 0.9678 26 6 14.4336 1.3969 -0.8222 27 7 14.5574 0.7131 -2.1291 28 8 13.5775 0.5742 -2.8389 29 8 15.6393 0.2895 -2.4946 30 6 13.2050 1.8772 -0.4088 31 6 6.1483 2.7930 1.4065 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 3.9563 0.7807 -0.8893 36 1 3.9557 0.7810 0.8907 37 1 3.6100 3.2367 0.8894 38 1 3.6107 3.2358 -0.8905 39 1 5.3779 5.0170 0.2382 40 1 6.4759 4.4877 -1.1084 41 1 8.3080 2.8694 -0.5666 42 1 10.9709 3.2820 -0.6051 43 1 10.6295 1.7174 0.1721 44 1 15.0589 3.9322 4.5428 45 1 15.6859 2.4284 3.8266 46 1 16.0265 3.9932 3.0498 47 1 16.3076 2.3125 1.8306 48 1 16.7652 0.0352 -0.8866 49 1 17.5471 2.8144 -1.1931 50 1 17.5072 0.1131 2.0368 51 1 19.3824 0.4715 0.5293 52 1 12.3368 1.7533 -1.0391 53 1 6.6180 1.8419 1.6570 54 1 5.4781 3.1537 2.1869 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17523010_4549636.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:25:47 Heat of formation + Delta-G solvation = -161.309249 kcal Electronic energy + Delta-G solvation = -40829.301922 eV Core-core repulsion = 35125.068015 eV Total energy + Delta-G solvation = -5704.233907 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.175 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -43.39638 -42.12059 -41.61254 -41.28447 -40.13052 -39.31345 -39.04844 -37.73201 -37.63913 -37.12421 -35.17608 -33.39515 -32.66719 -32.48339 -29.98961 -29.03560 -28.70304 -27.90803 -26.85985 -26.56280 -25.78315 -24.03679 -23.36621 -23.12006 -22.05251 -21.56425 -20.78656 -20.26639 -19.84568 -19.50374 -18.78295 -18.67080 -18.59188 -18.31492 -17.75422 -17.69224 -17.68217 -17.52204 -17.35323 -16.87364 -16.83281 -16.39202 -16.08237 -15.98913 -15.73902 -15.54865 -15.19126 -15.12955 -14.87007 -14.60877 -14.39786 -14.38053 -14.15091 -13.91740 -13.88189 -13.48007 -13.43108 -13.38356 -13.05165 -13.00911 -12.66767 -12.65666 -12.48495 -12.43097 -12.32320 -12.26735 -12.20869 -12.13777 -11.88047 -11.83804 -11.77336 -11.65363 -11.28257 -11.10610 -11.05729 -10.52737 -10.45368 -10.15341 -9.48414 -5.13097 -1.35864 -0.42786 0.16871 0.31057 1.13382 1.15097 1.23826 1.38006 1.57627 1.78143 1.90130 1.90804 1.94315 2.34004 2.98689 3.18189 3.27815 3.45910 3.50490 3.53524 3.53823 3.56880 3.72699 3.84277 3.88047 3.89152 3.94753 3.98450 4.06639 4.12083 4.20590 4.23263 4.24346 4.27901 4.31670 4.39837 4.42283 4.55256 4.55771 4.60105 4.69425 4.73907 4.76658 4.82752 4.83023 4.88158 4.91616 5.05495 5.12901 5.23869 5.25920 5.31082 5.40989 5.56923 5.64851 6.06949 6.40176 6.47313 6.68881 6.71885 7.08906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.546 6.546 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.096 4.096 8 H 0.117 0.883 9 C -0.133 4.133 10 C 0.112 3.888 11 H 0.079 0.921 12 N -0.690 5.690 13 C 0.518 3.482 14 O -0.567 6.567 15 C 0.027 3.973 16 O -0.291 6.291 17 C 0.101 3.899 18 C 0.171 3.829 19 O -0.307 6.307 20 C -0.005 4.005 21 C -0.163 4.163 22 C -0.040 4.040 23 C -0.092 4.092 24 O -0.536 6.536 25 Si 0.786 3.214 26 C -0.046 4.046 27 N 0.036 4.964 28 O -0.184 6.184 29 O -0.168 6.168 30 C -0.109 4.109 31 C -0.147 4.147 32 H 0.127 0.873 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.422 0.578 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.193 0.807 48 H 0.115 0.885 49 H 0.393 0.607 50 H -0.272 1.272 51 H -0.291 1.291 52 H 0.184 0.816 53 H 0.073 0.927 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 0.736 2.476 2.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.299 3.701 4 O -0.436 6.436 5 C -0.145 4.145 6 C -0.134 4.134 7 C -0.114 4.114 8 H 0.135 0.865 9 C -0.171 4.171 10 C 0.006 3.994 11 H 0.097 0.903 12 N -0.344 5.344 13 C 0.304 3.696 14 O -0.445 6.445 15 C -0.050 4.050 16 O -0.203 6.203 17 C 0.053 3.947 18 C 0.122 3.878 19 O -0.219 6.219 20 C -0.098 4.098 21 C -0.181 4.181 22 C -0.042 4.042 23 C -0.200 4.200 24 O -0.343 6.343 25 Si 0.688 3.312 26 C -0.131 4.131 27 N 0.549 4.451 28 O -0.395 6.395 29 O -0.381 6.381 30 C -0.129 4.129 31 C -0.186 4.186 32 H 0.145 0.855 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.260 0.740 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.210 0.790 48 H 0.132 0.868 49 H 0.242 0.758 50 H -0.198 1.198 51 H -0.218 1.218 52 H 0.201 0.799 53 H 0.092 0.908 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.979 0.877 4.293 4.489 hybrid contribution -0.920 -0.764 -1.333 1.791 sum 0.059 0.113 2.959 2.962 Atomic orbital electron populations 1.23483 0.75303 1.05471 1.02298 1.86517 1.24643 1.33598 1.83754 1.24675 0.93748 0.80770 0.70916 1.90676 1.68449 1.37482 1.47019 1.21567 0.84637 1.00492 1.07815 1.21366 0.95223 0.93756 1.03029 1.22595 0.93747 0.97695 0.97383 0.86509 1.23338 0.96507 0.97582 0.99686 1.21866 0.83617 0.96798 0.97096 0.90322 1.45329 1.06201 1.59889 1.23014 1.20326 0.85097 0.79031 0.85125 1.90785 1.86288 1.44932 1.22461 1.22914 0.83334 1.04738 0.94063 1.86302 1.13868 1.75494 1.44664 1.17959 0.85438 0.99077 0.92188 1.18683 0.91215 0.91726 0.86189 1.86333 1.38213 1.71116 1.26245 1.23816 0.85541 1.04221 0.96228 1.21079 0.97455 1.03033 0.96575 1.20221 0.95526 0.95531 0.92947 1.25769 0.94352 0.97212 1.02628 1.86668 1.84664 1.24898 1.38098 0.94404 0.74942 0.88283 0.73559 1.20563 0.97034 1.09111 0.86361 1.43718 1.00021 0.98751 1.02622 1.94498 1.29459 1.62416 1.53170 1.94577 1.14787 1.51589 1.77166 1.20907 0.98099 0.98093 0.95782 1.23527 0.97870 0.99538 0.97662 0.85469 0.92270 0.92132 0.85160 0.85983 0.92118 0.91423 0.88695 0.89284 0.73997 0.85308 0.85334 0.86083 0.90181 0.88798 0.79007 0.86759 0.75797 1.19769 1.21785 0.79856 0.90835 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.79 10.57 -51.37 -0.54 -1.33 16 3 C 0.45 1.16 7.96 71.24 0.57 1.73 16 4 O -0.55 -5.28 15.73 21.97 0.35 -4.93 16 5 C -0.11 0.64 5.80 29.85 0.17 0.82 16 6 C -0.10 0.49 4.34 30.59 0.13 0.62 16 7 C -0.10 0.85 3.52 -10.27 -0.04 0.82 16 8 H 0.12 -1.52 8.13 -2.39 -0.02 -1.54 16 9 C -0.13 0.98 7.39 31.12 0.23 1.21 16 10 C 0.11 -0.41 4.32 45.52 0.20 -0.21 16 11 H 0.08 0.19 7.47 -2.38 -0.02 0.17 16 12 N -0.69 4.30 5.26 -440.03 -2.32 1.98 16 13 C 0.52 0.25 7.91 87.66 0.69 0.94 16 14 O -0.57 -6.89 16.10 16.01 0.26 -6.63 16 15 C 0.03 -0.14 5.22 71.24 0.37 0.23 16 16 O -0.29 -0.73 9.45 -66.99 -0.63 -1.37 16 17 C 0.10 -0.01 6.70 22.57 0.15 0.14 16 18 C 0.17 -0.27 6.70 22.57 0.15 -0.12 16 19 O -0.31 0.23 10.28 -79.69 -0.82 -0.59 16 20 C 0.00 0.05 9.81 113.37 1.11 1.16 16 21 C -0.16 0.93 7.65 22.35 0.17 1.10 16 22 C -0.04 0.04 5.26 -19.86 -0.10 -0.06 16 23 C -0.09 0.02 1.74 71.23 0.12 0.15 16 24 O -0.54 -0.45 11.83 -129.82 -1.54 -1.99 16 25 Si 0.79 -4.38 29.91 68.60 2.05 -2.33 16 26 C -0.05 -0.13 6.85 36.38 0.25 0.12 16 27 N 0.04 0.32 4.45 -46.46 -0.21 0.11 16 28 O -0.18 -1.82 18.44 18.89 0.35 -1.47 16 29 O -0.17 -2.09 14.64 25.05 0.37 -1.72 16 30 C -0.11 0.15 8.54 22.35 0.19 0.34 16 31 C -0.15 0.80 7.43 31.12 0.23 1.04 16 32 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 33 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 34 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 35 H 0.13 -1.36 8.14 -2.38 -0.02 -1.38 16 36 H 0.12 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H 0.06 -0.10 7.81 -2.38 -0.02 -0.12 16 38 H 0.07 -0.19 8.10 -2.39 -0.02 -0.21 16 39 H 0.09 -0.57 8.10 -2.38 -0.02 -0.59 16 40 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 41 H 0.42 -5.75 8.70 -92.72 -0.81 -6.56 16 42 H 0.13 -1.46 7.67 -2.39 -0.02 -1.48 16 43 H 0.13 -1.47 7.66 -2.38 -0.02 -1.49 16 44 H 0.12 -1.43 8.14 -2.39 -0.02 -1.45 16 45 H 0.08 -1.07 7.66 -2.38 -0.02 -1.09 16 46 H 0.09 -1.46 7.67 -2.39 -0.02 -1.47 16 47 H 0.19 -2.48 3.36 -2.91 -0.01 -2.49 16 48 H 0.12 0.52 6.04 -2.39 -0.01 0.51 16 49 H 0.39 -3.59 8.70 -74.05 -0.64 -4.23 16 50 H -0.27 0.61 7.11 99.48 0.71 1.31 16 51 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 52 H 0.18 -1.12 5.85 -2.91 -0.02 -1.14 16 53 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 54 H 0.09 -0.36 7.90 -2.38 -0.02 -0.38 16 Total: 0.00 -38.71 454.50 2.70 -36.01 By element: Atomic # 1 Polarization: -26.50 SS G_CDS: -0.42 Total: -26.92 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.80 Total: 11.18 kcal Atomic # 7 Polarization: 4.62 SS G_CDS: -2.52 Total: 2.10 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -2.21 Total: -20.03 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.05 Total: -2.33 kcal Total: -38.71 2.70 -36.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17523010_4549636.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.298 kcal (2) G-P(sol) polarization free energy of solvation -38.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds