Wall clock time and date at job start Sun Mar 7 2021 08:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34236 * 116.99868 * 2 1 4 4 O 1.20832 * 119.99765 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00062 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.46851 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46877 * 179.97438 * 6 5 3 8 8 H 1.09001 * 112.85085 * 316.19792 * 7 6 5 9 9 C 1.53784 * 113.68850 * 87.46646 * 7 6 5 10 10 C 1.53786 * 87.08246 * 139.99332 * 9 7 6 11 11 H 1.08996 * 113.69249 * 220.01220 * 10 9 7 12 12 N 1.46500 * 113.61791 * 89.11242 * 10 9 7 13 13 C 1.34772 * 119.99984 * 107.50063 * 12 10 9 14 14 O 1.21288 * 119.99878 * 0.02562 * 13 12 10 15 15 C 1.50702 * 120.00028 * 180.02562 * 13 12 10 16 16 O 1.42900 * 109.47196 * 180.02562 * 15 13 12 17 17 C 1.35988 * 117.00304 * 179.97438 * 16 15 13 18 18 C 1.39155 * 120.07714 * 180.02562 * 17 16 15 19 19 O 1.35994 * 120.07069 * 0.25048 * 18 17 16 20 20 C 1.42902 * 116.99966 * 179.72412 * 19 18 17 21 21 C 1.38565 * 119.85574 * 179.97438 * 18 17 16 22 22 C 1.38238 * 119.99937 * 359.97438 * 21 18 17 23 23 C 1.50704 * 119.92536 * 180.02562 * 22 21 18 24 24 O 1.42898 * 109.47030 * 64.99830 * 23 22 21 25 25 Si 1.86302 * 109.46775 * 184.99821 * 23 22 21 26 26 C 1.38258 * 120.14613 * 0.02562 * 22 21 18 27 27 C 1.38237 * 120.14715 * 359.95354 * 26 22 21 28 28 C 1.53784 * 113.61515 * 185.00006 * 7 6 5 29 29 H 1.08998 * 109.47654 * 299.99936 * 1 2 3 30 30 H 1.09009 * 109.47274 * 60.00327 * 1 2 3 31 31 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46562 * 59.99931 * 5 3 2 33 33 H 1.08995 * 109.47004 * 299.99838 * 5 3 2 34 34 H 1.09001 * 109.47490 * 60.00626 * 6 5 3 35 35 H 1.09002 * 109.47404 * 299.99412 * 6 5 3 36 36 H 1.09001 * 113.61788 * 25.44467 * 9 7 6 37 37 H 1.09003 * 113.61222 * 254.53892 * 9 7 6 38 38 H 0.97000 * 119.99725 * 287.50964 * 12 10 9 39 39 H 1.08995 * 109.47265 * 60.00372 * 15 13 12 40 40 H 1.08999 * 109.47043 * 300.00451 * 15 13 12 41 41 H 1.08998 * 109.47006 * 60.00304 * 20 19 18 42 42 H 1.09001 * 109.46956 * 180.02562 * 20 19 18 43 43 H 1.08998 * 109.46920 * 300.00344 * 20 19 18 44 44 H 1.08000 * 119.99484 * 179.97438 * 21 18 17 45 45 H 1.09000 * 109.47100 * 304.99225 * 23 22 21 46 46 H 0.96698 * 114.00153 * 60.00148 * 24 23 22 47 47 H 1.48498 * 110.00043 * 58.68027 * 25 23 22 48 48 H 1.48506 * 109.99687 * 179.97438 * 25 23 22 49 49 H 1.07997 * 119.91985 * 179.97438 * 26 22 21 50 50 H 1.07993 * 120.00036 * 179.97438 * 27 26 22 51 51 H 1.08998 * 113.61407 * 105.38503 * 28 7 6 52 52 H 1.08999 * 113.61324 * 334.48296 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 -0.0002 7 6 5.5279 2.8223 0.0011 8 1 5.9880 2.1211 0.6973 9 6 6.1493 2.7914 -1.4053 10 6 7.1404 3.8557 -0.9051 11 1 7.3547 4.6335 -1.6380 12 7 8.3513 3.2929 -0.3023 13 6 9.5260 3.3625 -0.9593 14 8 9.5807 3.8915 -2.0493 15 6 10.7714 2.7831 -0.3394 16 8 11.8784 2.9799 -1.2215 17 6 13.0870 2.5123 -0.8094 18 6 14.2084 2.6701 -1.6180 19 8 14.0991 3.2969 -2.8199 20 6 15.2931 3.4283 -3.5940 21 6 15.4378 2.1924 -1.1933 22 6 15.5484 1.5611 0.0315 23 6 16.8864 1.0426 0.4921 24 8 17.7806 2.1399 0.6881 25 14 16.6757 0.1189 2.0962 26 6 14.4342 1.4043 0.8350 27 6 13.2049 1.8789 0.4174 28 6 6.0695 4.2564 0.1232 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.9563 0.7807 -0.8892 33 1 3.9556 0.7811 0.8908 34 1 3.6099 3.2369 0.8894 35 1 3.6107 3.2357 -0.8907 36 1 5.4798 3.1512 -2.1866 37 1 6.6193 1.8399 -1.6542 38 1 8.3074 2.8701 0.5696 39 1 10.6290 1.7163 -0.1671 40 1 10.9704 3.2810 0.6095 41 1 15.6936 2.4390 -3.8150 42 1 15.0665 3.9455 -4.5264 43 1 16.0299 4.0011 -3.0309 44 1 16.3096 2.3133 -1.8192 45 1 17.2953 0.3710 -0.2629 46 1 17.4798 2.7793 1.3482 47 1 15.7233 -1.0057 1.9134 48 1 17.9882 -0.3981 2.5607 49 1 14.5247 0.9101 1.7910 50 1 12.3360 1.7548 1.0467 51 1 6.4748 4.4877 1.1082 52 1 5.3781 5.0167 -0.2402 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17523010_60476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:26:20 Heat of formation + Delta-G solvation = -171.901351 kcal Electronic energy + Delta-G solvation = -33765.783588 eV Core-core repulsion = 28892.106809 eV Total energy + Delta-G solvation = -4873.676779 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.84623 -41.56803 -41.18597 -39.90838 -39.07811 -38.78030 -37.62936 -36.90494 -35.13940 -33.34886 -31.99290 -31.44585 -29.73074 -28.92974 -28.44441 -26.83822 -26.54938 -26.13040 -23.83253 -23.19036 -22.56811 -21.86173 -21.53121 -20.28035 -19.76785 -18.62784 -18.51784 -18.34289 -17.88664 -17.68269 -17.53923 -17.48484 -17.19545 -16.84499 -16.66699 -16.09853 -16.03964 -15.75530 -15.66412 -15.60389 -15.33400 -15.09917 -14.84095 -14.55907 -14.38266 -14.27959 -14.10501 -13.76214 -13.61785 -13.51614 -13.39298 -13.34500 -13.02168 -12.65371 -12.61309 -12.52844 -12.16959 -12.12444 -12.10251 -11.96459 -11.86328 -11.82623 -11.74228 -11.63776 -11.26383 -11.06712 -10.98502 -10.42120 -10.11188 -9.78377 -8.90596 -4.95891 0.17638 0.28940 1.16348 1.34766 1.45859 1.48964 1.68956 1.79350 2.01713 2.31318 2.57190 2.58509 3.50303 3.52217 3.55513 3.56079 3.71247 3.74266 3.87125 3.88200 3.89826 3.93573 4.06237 4.14660 4.15089 4.22386 4.25479 4.29078 4.29245 4.29768 4.33094 4.36568 4.50449 4.57070 4.61706 4.64638 4.65734 4.70579 4.78963 4.84463 4.90150 4.93699 5.01595 5.07337 5.13415 5.14809 5.25987 5.33519 5.38273 5.42802 5.60107 5.65686 5.97961 6.43618 6.56013 6.70136 6.78969 7.17497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.453 3.547 4 O -0.546 6.546 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.093 4.093 8 H 0.120 0.880 9 C -0.149 4.149 10 C 0.110 3.890 11 H 0.073 0.927 12 N -0.689 5.689 13 C 0.513 3.487 14 O -0.575 6.575 15 C 0.035 3.965 16 O -0.316 6.316 17 C 0.085 3.915 18 C 0.075 3.925 19 O -0.335 6.335 20 C 0.021 3.979 21 C -0.154 4.154 22 C -0.120 4.120 23 C -0.077 4.077 24 O -0.558 6.558 25 Si 0.788 3.212 26 C -0.108 4.108 27 C -0.158 4.158 28 C -0.132 4.132 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.423 0.577 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.139 0.861 45 H 0.102 0.898 46 H 0.395 0.605 47 H -0.279 1.279 48 H -0.304 1.304 49 H 0.162 0.838 50 H 0.179 0.821 51 H 0.091 0.909 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 -4.051 8.837 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.299 3.701 4 O -0.437 6.437 5 C -0.145 4.145 6 C -0.134 4.134 7 C -0.111 4.111 8 H 0.138 0.862 9 C -0.188 4.188 10 C 0.004 3.996 11 H 0.091 0.909 12 N -0.343 5.343 13 C 0.300 3.700 14 O -0.454 6.454 15 C -0.043 4.043 16 O -0.229 6.229 17 C 0.040 3.960 18 C 0.030 3.970 19 O -0.250 6.250 20 C -0.074 4.074 21 C -0.172 4.172 22 C -0.121 4.121 23 C -0.186 4.186 24 O -0.366 6.366 25 Si 0.693 3.307 26 C -0.125 4.125 27 C -0.176 4.176 28 C -0.170 4.170 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.262 0.738 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.129 0.871 43 H 0.083 0.917 44 H 0.156 0.844 45 H 0.120 0.880 46 H 0.245 0.755 47 H -0.206 1.206 48 H -0.232 1.232 49 H 0.179 0.821 50 H 0.196 0.804 51 H 0.110 0.890 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.028 -4.265 7.735 8.892 hybrid contribution -0.102 0.045 -0.956 0.962 sum -1.130 -4.219 6.779 8.064 Atomic orbital electron populations 1.23481 0.75330 1.05471 1.02280 1.86516 1.24616 1.33593 1.83761 1.24692 0.93767 0.80762 0.70901 1.90679 1.68457 1.37507 1.47033 1.21565 0.84590 1.00448 1.07864 1.21371 0.95243 0.93800 1.03000 1.22589 0.93686 0.97664 0.97194 0.86184 1.23532 0.97894 0.99515 0.97810 1.21855 0.83837 0.96752 0.97141 0.90880 1.45290 1.06033 1.60018 1.22950 1.20621 0.85444 0.78883 0.85095 1.90780 1.86424 1.45221 1.22926 1.22787 0.83030 1.04393 0.94041 1.86223 1.14759 1.76395 1.45549 1.18593 0.83656 0.99540 0.94255 1.18686 0.92839 0.98534 0.86949 1.86189 1.36552 1.73689 1.28549 1.23274 0.85977 1.02400 0.95713 1.21009 0.95270 1.02307 0.98654 1.20204 0.96525 1.00650 0.94685 1.25283 0.88014 0.94474 1.10859 1.86467 1.46975 1.37577 1.65574 0.93678 0.77612 0.80347 0.79040 1.21013 0.91201 1.00230 1.00082 1.21405 1.00812 1.01054 0.94376 1.23330 0.96368 0.97592 0.99695 0.92101 0.92351 0.85450 0.86077 0.84942 0.91290 0.92321 0.89587 0.90890 0.73844 0.85350 0.85143 0.91928 0.87100 0.91716 0.84354 0.88012 0.75451 1.20577 1.23222 0.82107 0.80392 0.89030 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.69 10.57 -51.48 -0.54 -1.23 16 3 C 0.45 1.07 7.96 71.24 0.57 1.63 16 4 O -0.55 -5.24 15.73 21.95 0.35 -4.89 16 5 C -0.11 0.67 5.80 29.85 0.17 0.84 16 6 C -0.10 0.50 4.34 30.59 0.13 0.63 16 7 C -0.09 0.83 3.52 -10.26 -0.04 0.79 16 8 H 0.12 -1.64 8.13 -2.39 -0.02 -1.66 16 9 C -0.15 0.67 7.43 31.12 0.23 0.90 16 10 C 0.11 -0.26 4.32 45.52 0.20 -0.07 16 11 H 0.07 0.33 7.46 -2.39 -0.02 0.31 16 12 N -0.69 3.66 5.26 -440.02 -2.32 1.35 16 13 C 0.51 1.45 7.91 87.66 0.69 2.14 16 14 O -0.58 -9.24 16.10 15.98 0.26 -8.98 16 15 C 0.04 -0.13 5.22 71.24 0.37 0.25 16 16 O -0.32 -2.51 9.45 -67.00 -0.63 -3.15 16 17 C 0.09 0.42 6.70 22.57 0.15 0.57 16 18 C 0.08 0.60 6.70 22.57 0.15 0.75 16 19 O -0.34 -3.80 10.28 -79.62 -0.82 -4.62 16 20 C 0.02 0.06 9.81 113.37 1.11 1.17 16 21 C -0.15 -0.59 8.67 22.35 0.19 -0.40 16 22 C -0.12 0.03 5.35 -19.86 -0.11 -0.08 16 23 C -0.08 0.11 2.80 71.24 0.20 0.31 16 24 O -0.56 0.18 12.83 -148.98 -1.91 -1.73 16 25 Si 0.79 -3.61 29.79 68.60 2.04 -1.57 16 26 C -0.11 0.46 8.66 22.27 0.19 0.65 16 27 C -0.16 0.58 9.04 22.35 0.20 0.78 16 28 C -0.13 0.93 7.39 31.12 0.23 1.16 16 29 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 30 H 0.06 -0.01 8.13 -2.38 -0.02 -0.03 16 31 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.12 -1.06 8.14 -2.39 -0.02 -1.08 16 33 H 0.13 -1.49 8.14 -2.39 -0.02 -1.50 16 34 H 0.07 -0.22 8.10 -2.39 -0.02 -0.24 16 35 H 0.06 -0.07 7.81 -2.39 -0.02 -0.09 16 36 H 0.09 -0.24 7.90 -2.39 -0.02 -0.25 16 37 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.42 -5.89 8.70 -92.71 -0.81 -6.69 16 39 H 0.13 -1.40 7.66 -2.39 -0.02 -1.42 16 40 H 0.13 -1.45 7.66 -2.39 -0.02 -1.47 16 41 H 0.06 0.03 7.66 -2.39 -0.02 0.02 16 42 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.06 0.04 7.67 -2.39 -0.02 0.02 16 44 H 0.14 0.38 6.30 -2.91 -0.02 0.36 16 45 H 0.10 0.03 7.96 -2.39 -0.02 0.01 16 46 H 0.40 -3.37 8.70 -74.06 -0.64 -4.01 16 47 H -0.28 0.21 7.11 99.48 0.71 0.92 16 48 H -0.30 -1.11 7.11 99.48 0.71 -0.41 16 49 H 0.16 -1.70 4.89 -2.91 -0.01 -1.71 16 50 H 0.18 -2.21 6.30 -2.91 -0.02 -2.23 16 51 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 52 H 0.09 -0.50 8.10 -2.39 -0.02 -0.52 16 Total: 0.00 -37.32 432.55 1.83 -35.49 By element: Atomic # 1 Polarization: -23.42 SS G_CDS: -0.45 Total: -23.87 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.85 Total: 13.19 kcal Atomic # 7 Polarization: 3.66 SS G_CDS: -2.32 Total: 1.35 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -3.31 Total: -24.60 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.04 Total: -1.57 kcal Total: -37.32 1.83 -35.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17523010_60476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.407 kcal (2) G-P(sol) polarization free energy of solvation -37.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds