Wall clock time and date at job start Sun Mar 7 2021 08:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47248 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47278 * 179.97438 * 6 5 3 8 8 H 1.08998 * 112.85387 * 314.66920 * 7 6 5 9 9 C 1.53774 * 113.61378 * 85.86330 * 7 6 5 10 10 C 1.53960 * 87.02192 * 139.95250 * 9 7 6 11 11 H 1.09002 * 113.66553 * 220.06948 * 10 9 7 12 12 N 1.46501 * 113.61244 * 89.19783 * 10 9 7 13 13 C 1.34783 * 119.99537 * 107.46844 * 12 10 9 14 14 O 1.21274 * 120.00084 * 0.02562 * 13 12 10 15 15 C 1.50699 * 119.99713 * 180.02562 * 13 12 10 16 16 N 1.46499 * 109.47072 * 180.02562 * 15 13 12 17 17 C 1.36833 * 125.06025 * 265.02365 * 16 15 13 18 18 C 1.34235 * 109.93530 * 179.97438 * 17 16 15 19 19 C 1.50705 * 126.49850 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.46982 * 104.97175 * 19 18 17 21 21 Si 1.86299 * 109.47160 * 344.97237 * 19 18 17 22 22 C 1.46489 * 107.00364 * 359.97438 * 18 17 16 23 23 C 1.39584 * 134.04463 * 180.02562 * 22 18 17 24 24 C 1.36659 * 119.76948 * 179.97438 * 23 22 18 25 25 C 1.38790 * 120.52757 * 0.02562 * 24 23 22 26 26 C 1.37784 * 120.66480 * 359.97438 * 25 24 23 27 27 C 1.37684 * 125.06179 * 84.71936 * 16 15 13 28 28 C 1.53776 * 87.10825 * 334.63654 * 10 9 7 29 29 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 30 30 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 31 31 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47488 * 300.00148 * 5 3 2 33 33 H 1.09001 * 109.47517 * 59.99934 * 5 3 2 34 34 H 1.08998 * 109.47295 * 300.00082 * 6 5 3 35 35 H 1.09004 * 109.47225 * 60.00231 * 6 5 3 36 36 H 1.09000 * 113.61958 * 254.52861 * 9 7 6 37 37 H 1.09002 * 113.61778 * 25.43153 * 9 7 6 38 38 H 0.96993 * 120.00469 * 287.47144 * 12 10 9 39 39 H 1.09001 * 109.46832 * 300.00342 * 15 13 12 40 40 H 1.08999 * 109.47151 * 59.99586 * 15 13 12 41 41 H 1.07996 * 125.03166 * 359.96217 * 17 16 15 42 42 H 1.08998 * 109.46823 * 224.97217 * 19 18 17 43 43 H 0.96695 * 113.99983 * 179.97438 * 20 19 18 44 44 H 1.48494 * 110.00050 * 298.68158 * 21 19 18 45 45 H 1.48506 * 109.99831 * 59.99927 * 21 19 18 46 46 H 1.08005 * 120.11228 * 359.97438 * 23 22 18 47 47 H 1.08003 * 119.73885 * 180.02562 * 24 23 22 48 48 H 1.07997 * 119.66659 * 180.02562 * 25 24 23 49 49 H 1.08003 * 120.11263 * 180.02562 * 26 25 24 50 50 H 1.08998 * 113.62096 * 270.81377 * 28 10 9 51 51 H 1.09000 * 113.69065 * 139.91456 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5280 2.8222 0.0002 8 1 5.9877 2.1388 0.7142 9 6 6.1485 2.7537 -1.4051 10 6 7.1397 3.8328 -0.9326 11 1 7.3523 4.5916 -1.6857 12 7 8.3518 3.2870 -0.3169 13 6 9.5258 3.3409 -0.9770 14 8 9.5786 3.8416 -2.0803 15 6 10.7725 2.7789 -0.3439 16 7 11.9060 2.9584 -1.2545 17 6 12.3595 2.0188 -2.1399 18 6 13.4101 2.5018 -2.8217 19 6 14.1945 1.7815 -3.8880 20 8 13.8421 2.3014 -5.1716 21 14 13.8011 -0.0384 -3.8258 22 6 13.6489 3.8622 -2.3335 23 6 14.5780 4.8560 -2.6456 24 6 14.5346 6.0550 -1.9912 25 6 13.5741 6.2926 -1.0179 26 6 12.6475 5.3256 -0.6942 27 6 12.6700 4.0998 -1.3510 28 6 6.0696 4.2589 0.0863 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9565 0.7806 0.8892 33 1 3.9557 0.7810 -0.8908 34 1 3.6100 3.2368 -0.8893 35 1 3.6108 3.2357 0.8907 36 1 6.6183 1.7959 -1.6288 37 1 5.4784 3.0923 -2.1953 38 1 8.3096 2.8868 0.5656 39 1 10.9721 3.3014 0.5916 40 1 10.6314 1.7168 -0.1438 41 1 11.9350 1.0344 -2.2707 42 1 15.2608 1.9288 -3.7166 43 1 14.3101 1.8834 -5.9073 44 1 14.1924 -0.5978 -2.5071 45 1 12.3501 -0.2526 -4.0580 46 1 15.3285 4.6781 -3.4016 47 1 15.2534 6.8238 -2.2333 48 1 13.5523 7.2453 -0.5097 49 1 11.9037 5.5202 0.0644 50 1 5.3778 5.0099 -0.2953 51 1 6.4744 4.5150 1.0654 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17523010_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:26:54 Heat of formation + Delta-G solvation = -59.833349 kcal Electronic energy + Delta-G solvation = -33010.028077 eV Core-core repulsion = 28456.697123 eV Total energy + Delta-G solvation = -4553.330954 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.64516 -41.63472 -41.21869 -39.61279 -38.10201 -37.68778 -37.58832 -35.22731 -34.30260 -33.28512 -31.48641 -30.36961 -29.39913 -28.85475 -26.96500 -26.65877 -25.70723 -23.95096 -23.42638 -22.79640 -21.89445 -21.58482 -20.62555 -20.32903 -18.76200 -18.56299 -18.31320 -18.20419 -17.79391 -17.72627 -17.56006 -16.90386 -16.53766 -16.43823 -16.05755 -15.75593 -15.52458 -15.33704 -15.12675 -14.91936 -14.81013 -14.72376 -14.47118 -14.42856 -14.19520 -14.15167 -13.63064 -13.59329 -13.46043 -13.31261 -13.05752 -12.76504 -12.69632 -12.64519 -12.51633 -12.19079 -12.03979 -11.94115 -11.86681 -11.80714 -11.69576 -11.34485 -11.26254 -11.13739 -10.63889 -10.20044 -10.17156 -9.25722 -8.73440 -4.94888 0.04330 0.56861 1.11803 1.24300 1.33420 1.34431 1.58163 1.71001 1.74807 1.98924 2.06939 2.87922 3.43576 3.46866 3.47368 3.50153 3.59837 3.67627 3.68703 3.78683 3.82709 3.84912 3.98112 4.00685 4.15897 4.18034 4.21673 4.22928 4.24787 4.27421 4.35027 4.49433 4.51789 4.55447 4.61777 4.66786 4.70394 4.71410 4.75831 4.80659 4.84143 4.85664 4.98640 5.06861 5.07383 5.18438 5.26546 5.37636 5.44320 5.56872 5.58691 5.65423 5.66332 6.05141 6.15532 6.38462 6.65720 6.99480 7.05665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.454 3.546 4 O -0.546 6.546 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.092 4.092 8 H 0.119 0.881 9 C -0.148 4.148 10 C 0.110 3.890 11 H 0.070 0.930 12 N -0.690 5.690 13 C 0.492 3.508 14 O -0.573 6.573 15 C 0.087 3.913 16 N -0.468 5.468 17 C 0.054 3.946 18 C -0.182 4.182 19 C -0.052 4.052 20 O -0.571 6.571 21 Si 0.789 3.211 22 C -0.120 4.120 23 C -0.082 4.082 24 C -0.151 4.151 25 C -0.102 4.102 26 C -0.136 4.136 27 C 0.090 3.910 28 C -0.132 4.132 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.422 0.578 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.176 0.824 42 H 0.079 0.921 43 H 0.398 0.602 44 H -0.281 1.281 45 H -0.294 1.294 46 H 0.128 0.872 47 H 0.144 0.856 48 H 0.150 0.850 49 H 0.134 0.866 50 H 0.092 0.908 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 -6.357 5.197 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.299 3.701 4 O -0.436 6.436 5 C -0.145 4.145 6 C -0.134 4.134 7 C -0.110 4.110 8 H 0.137 0.863 9 C -0.186 4.186 10 C 0.004 3.996 11 H 0.088 0.912 12 N -0.343 5.343 13 C 0.278 3.722 14 O -0.452 6.452 15 C -0.037 4.037 16 N -0.150 5.150 17 C -0.072 4.072 18 C -0.189 4.189 19 C -0.161 4.161 20 O -0.381 6.381 21 Si 0.692 3.308 22 C -0.124 4.124 23 C -0.101 4.101 24 C -0.170 4.170 25 C -0.121 4.121 26 C -0.157 4.157 27 C -0.015 4.015 28 C -0.170 4.170 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.260 0.740 39 H 0.167 0.833 40 H 0.176 0.824 41 H 0.193 0.807 42 H 0.097 0.903 43 H 0.249 0.751 44 H -0.208 1.208 45 H -0.221 1.221 46 H 0.146 0.854 47 H 0.161 0.839 48 H 0.168 0.832 49 H 0.152 0.848 50 H 0.111 0.889 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.071 -6.036 5.387 8.091 hybrid contribution -0.730 0.701 0.233 1.038 sum -0.659 -5.335 5.620 7.777 Atomic orbital electron populations 1.23491 0.75260 1.05516 1.02300 1.86513 1.24673 1.33533 1.83742 1.24647 0.93707 0.80796 0.70933 1.90678 1.68443 1.37500 1.47009 1.21553 0.84724 1.00381 1.07822 1.21366 0.95149 0.93862 1.03026 1.22567 0.93780 0.97482 0.97200 0.86332 1.23538 0.97887 0.99327 0.97876 1.21872 0.83998 0.96761 0.96957 0.91181 1.45437 1.06299 1.60961 1.21634 1.21433 0.86059 0.78966 0.85759 1.90815 1.86329 1.45904 1.22105 1.21994 0.81565 1.07011 0.93163 1.43378 1.26303 1.11134 1.34214 1.21714 0.96281 0.95398 0.93773 1.20062 1.01327 0.94791 1.02708 1.24355 0.99744 1.09274 0.82762 1.86514 1.69681 1.66401 1.15475 0.94115 0.79773 0.73140 0.83733 1.19365 0.98670 0.95139 0.99210 1.20494 0.97721 0.92567 0.99275 1.20979 1.00638 0.97438 0.97958 1.21193 0.94181 0.99177 0.97594 1.20267 1.02070 0.90912 1.02435 1.18488 0.93860 0.89532 0.99666 1.23313 0.96427 0.97541 0.99695 0.92327 0.92087 0.85390 0.85006 0.86114 0.92301 0.91266 0.90979 0.89669 0.73970 0.83276 0.82445 0.80743 0.90285 0.75145 1.20751 1.22108 0.85440 0.83859 0.83243 0.84835 0.88947 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.81 10.57 -51.42 -0.54 -1.36 16 3 C 0.45 1.27 7.96 71.24 0.57 1.84 16 4 O -0.55 -5.46 15.73 21.98 0.35 -5.11 16 5 C -0.11 0.61 5.81 29.85 0.17 0.78 16 6 C -0.10 0.43 4.33 30.59 0.13 0.56 16 7 C -0.09 0.75 3.52 -10.27 -0.04 0.71 16 8 H 0.12 -1.51 8.14 -2.39 -0.02 -1.53 16 9 C -0.15 0.56 7.44 31.18 0.23 0.80 16 10 C 0.11 -0.19 4.33 45.58 0.20 0.00 16 11 H 0.07 0.39 7.46 -2.39 -0.02 0.37 16 12 N -0.69 3.43 5.26 -439.75 -2.32 1.12 16 13 C 0.49 1.16 7.90 87.66 0.69 1.85 16 14 O -0.57 -8.79 16.02 -3.01 -0.05 -8.84 16 15 C 0.09 -0.30 6.48 85.63 0.55 0.26 16 16 N -0.47 -3.14 2.27 -520.00 -1.18 -4.32 16 17 C 0.05 0.46 9.89 83.00 0.82 1.28 16 18 C -0.18 -1.99 5.61 -18.63 -0.10 -2.10 16 19 C -0.05 -0.24 3.05 71.24 0.22 -0.02 16 20 O -0.57 -3.53 12.86 -148.98 -1.92 -5.45 16 21 Si 0.79 -0.57 30.79 68.60 2.11 1.55 16 22 C -0.12 -1.56 6.35 -20.20 -0.13 -1.69 16 23 C -0.08 -0.85 10.05 22.22 0.22 -0.62 16 24 C -0.15 -1.04 9.97 22.03 0.22 -0.82 16 25 C -0.10 -0.58 10.01 22.29 0.22 -0.36 16 26 C -0.14 -0.99 10.00 22.37 0.22 -0.76 16 27 C 0.09 0.96 6.80 39.03 0.27 1.23 16 28 C -0.13 0.82 7.39 31.12 0.23 1.05 16 29 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 30 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 31 H 0.13 -0.85 8.14 -2.38 -0.02 -0.87 16 32 H 0.13 -1.39 8.14 -2.38 -0.02 -1.40 16 33 H 0.12 -0.98 8.14 -2.39 -0.02 -1.00 16 34 H 0.06 -0.04 7.83 -2.39 -0.02 -0.06 16 35 H 0.07 -0.18 8.10 -2.38 -0.02 -0.20 16 36 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.08 -0.16 7.92 -2.39 -0.02 -0.18 16 38 H 0.42 -5.52 8.70 -92.71 -0.81 -6.33 16 39 H 0.15 -1.43 8.14 -2.39 -0.02 -1.45 16 40 H 0.16 -1.74 8.12 -2.39 -0.02 -1.76 16 41 H 0.18 0.72 6.30 -2.91 -0.02 0.70 16 42 H 0.08 0.12 7.96 -2.39 -0.02 0.10 16 43 H 0.40 -2.17 8.74 -74.06 -0.65 -2.82 16 44 H -0.28 -0.90 7.11 99.48 0.71 -0.19 16 45 H -0.29 -1.65 7.04 99.48 0.70 -0.95 16 46 H 0.13 0.97 8.06 -2.91 -0.02 0.94 16 47 H 0.14 0.25 8.06 -2.91 -0.02 0.23 16 48 H 0.15 -0.01 8.06 -2.91 -0.02 -0.03 16 49 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 50 H 0.09 -0.41 8.10 -2.39 -0.02 -0.43 16 51 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: 0.00 -36.87 429.81 1.89 -34.98 By element: Atomic # 1 Polarization: -17.25 SS G_CDS: -0.47 Total: -17.72 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 5.90 Total: 5.15 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -3.50 Total: -3.20 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -2.16 Total: -20.76 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: 2.11 Total: 1.55 kcal Total: -36.87 1.89 -34.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17523010_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.851 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds