Wall clock time and date at job start Sun Mar 7 2021 08:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99447 * 2 1 4 4 O 1.20816 * 120.00581 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99656 * 180.02562 * 3 2 1 6 6 C 1.55211 * 108.15472 * 80.00084 * 5 3 2 7 7 Si 1.90177 * 98.91436 * 141.87724 * 6 5 3 8 8 C 1.86293 * 111.97294 * 88.89230 * 7 6 5 9 9 C 1.86307 * 111.96934 * 215.24242 * 7 6 5 10 10 C 1.90185 * 96.36885 * 332.09511 * 7 6 5 11 11 N 1.45027 * 108.15504 * 206.38661 * 5 3 2 12 12 C 1.34770 * 120.85641 * 59.20469 * 11 5 3 13 13 O 1.21282 * 120.00881 * 0.02562 * 12 11 5 14 14 C 1.50707 * 119.99463 * 180.02562 * 12 11 5 15 15 N 1.46505 * 109.46760 * 180.02562 * 14 12 11 16 16 C 1.36832 * 125.06149 * 265.02083 * 15 14 12 17 17 C 1.34239 * 109.93835 * 179.97438 * 16 15 14 18 18 C 1.50697 * 126.49813 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.46981 * 104.97858 * 18 17 16 20 20 Si 1.86306 * 109.47488 * 344.97861 * 18 17 16 21 21 H 1.48495 * 109.46809 * 59.99606 * 20 18 17 22 22 H 1.48499 * 109.46958 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46889 * 300.00051 * 20 18 17 24 24 C 1.46482 * 106.99818 * 0.02562 * 17 16 15 25 25 C 1.39595 * 134.03842 * 180.02562 * 24 17 16 26 26 C 1.36661 * 119.76729 * 179.97438 * 25 24 17 27 27 C 1.38793 * 120.52524 * 359.97438 * 26 25 24 28 28 C 1.37782 * 120.66858 * 0.02562 * 27 26 25 29 29 C 1.37688 * 125.06273 * 84.71899 * 15 14 12 30 30 H 1.08992 * 109.47344 * 59.99937 * 1 2 3 31 31 H 1.09002 * 109.46554 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47076 * 299.99234 * 1 2 3 33 33 H 1.09004 * 108.00384 * 323.17811 * 5 3 2 34 34 H 1.09002 * 111.51680 * 259.32050 * 6 5 3 35 35 H 1.09003 * 111.51240 * 24.43775 * 6 5 3 36 36 H 1.09001 * 109.47366 * 59.99721 * 8 7 6 37 37 H 1.09002 * 109.47391 * 179.97438 * 8 7 6 38 38 H 1.08996 * 109.47322 * 299.99922 * 8 7 6 39 39 H 1.09002 * 109.47349 * 59.99666 * 9 7 6 40 40 H 1.08996 * 109.47248 * 179.97438 * 9 7 6 41 41 H 1.09002 * 109.47372 * 300.00060 * 9 7 6 42 42 H 1.09002 * 111.25475 * 271.06126 * 10 7 6 43 43 H 1.09002 * 111.32475 * 146.46336 * 10 7 6 44 44 H 1.08996 * 109.47038 * 299.99548 * 14 12 11 45 45 H 1.08993 * 109.47353 * 60.00014 * 14 12 11 46 46 H 1.07999 * 125.03105 * 359.96823 * 16 15 14 47 47 H 1.09008 * 109.47174 * 224.97935 * 18 17 16 48 48 H 0.96697 * 113.99896 * 299.99644 * 19 18 17 49 49 H 1.07999 * 120.11868 * 359.97438 * 25 24 17 50 50 H 1.07998 * 119.74114 * 180.02562 * 26 25 24 51 51 H 1.08010 * 119.66322 * 179.97438 * 27 26 25 52 52 H 1.08002 * 120.11159 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0620 1.0449 -1.4533 7 14 5.4948 2.2952 -1.4772 8 6 7.0922 1.5362 -0.8919 9 6 5.6865 3.1037 -3.1447 10 6 4.7584 3.4846 -0.1888 11 7 3.9531 2.5313 0.6120 12 6 3.5903 2.8245 1.8764 13 8 2.9321 2.0329 2.5176 14 6 4.0025 4.1361 2.4936 15 7 3.4891 4.2138 3.8636 16 6 2.3165 4.8159 4.2306 17 6 2.1427 4.7089 5.5574 18 6 0.9789 5.2391 6.3545 19 8 0.1227 4.1566 6.7249 20 14 0.0239 6.4609 5.3220 21 1 -0.4801 5.7874 4.0982 22 1 -1.1225 6.9837 6.1078 23 1 0.9137 7.5858 4.9371 24 6 3.2987 3.9791 6.0832 25 6 3.6864 3.5644 7.3586 26 6 4.8584 2.8810 7.5228 27 6 5.6666 2.5951 6.4313 28 6 5.3033 2.9950 5.1638 29 6 4.1118 3.6867 4.9727 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.9464 0.4638 0.6204 34 1 4.4190 0.0251 -1.5970 35 1 3.2945 1.3025 -2.1831 36 1 7.3575 0.7018 -1.5413 37 1 7.8833 2.2855 -0.9224 38 1 6.9709 1.1769 0.1299 39 1 4.7683 3.6329 -3.3997 40 1 6.5158 3.8104 -3.1127 41 1 5.8873 2.3412 -3.8973 42 1 4.1270 4.2372 -0.6611 43 1 5.5389 3.9480 0.4147 44 1 5.0902 4.2044 2.5092 45 1 3.5952 4.9584 1.9054 46 1 1.6322 5.3050 3.5531 47 1 1.3489 5.7334 7.2528 48 1 -0.2439 3.6704 5.9737 49 1 3.0623 3.7829 8.2125 50 1 5.1577 2.5600 8.5096 51 1 6.5903 2.0545 6.5771 52 1 5.9392 2.7681 4.3209 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567684_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:09:04 Heat of formation + Delta-G solvation = -101.322330 kcal Electronic energy + Delta-G solvation = -35627.969476 eV Core-core repulsion = 31103.707941 eV Total energy + Delta-G solvation = -4524.261535 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 390.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.66071 -42.01058 -40.56574 -38.17083 -37.92593 -37.57856 -36.96469 -34.26994 -32.68660 -31.27881 -30.27723 -29.21475 -29.02370 -28.61713 -28.36944 -27.50042 -25.95986 -24.69528 -23.78978 -22.97504 -22.17951 -20.80366 -20.36050 -19.13853 -18.76960 -18.54150 -17.96760 -17.83950 -17.36335 -17.25291 -16.87856 -16.44834 -16.27967 -16.04741 -15.61149 -15.28336 -15.15986 -14.83809 -14.76938 -14.60448 -14.46346 -14.36672 -14.24887 -13.93849 -13.85112 -13.74877 -13.71949 -13.51374 -13.39478 -13.23140 -13.15548 -13.10550 -12.73100 -12.72624 -12.59914 -12.40561 -12.19677 -11.97985 -11.95800 -11.95603 -11.73419 -11.52294 -10.90647 -10.84527 -10.69608 -10.55589 -10.33895 -9.88047 -9.19328 -8.67692 0.10815 0.61261 0.92128 1.13892 1.15838 1.28250 1.30187 1.42251 1.49085 1.59940 1.71383 1.81813 1.87490 1.91522 2.04325 2.37586 2.93136 3.26640 3.52565 3.55230 3.58946 3.62604 3.67994 3.74822 3.96958 3.97608 4.01636 4.11184 4.12923 4.20512 4.27896 4.46974 4.50766 4.53852 4.58170 4.68617 4.73021 4.75691 4.78551 4.86908 4.87910 4.88345 4.91429 4.93646 4.97605 5.12113 5.20204 5.28874 5.49639 5.65041 5.66060 5.71975 5.72626 5.72758 5.89693 6.15762 6.23531 6.53519 6.66670 6.84440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.449 3.551 4 O -0.538 6.538 5 C 0.154 3.846 6 C -0.417 4.417 7 Si 1.106 2.894 8 C -0.454 4.454 9 C -0.453 4.453 10 C -0.223 4.223 11 N -0.578 5.578 12 C 0.493 3.507 13 O -0.568 6.568 14 C 0.095 3.905 15 N -0.468 5.468 16 C 0.055 3.945 17 C -0.212 4.212 18 C -0.049 4.049 19 O -0.558 6.558 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.247 1.247 24 C -0.115 4.115 25 C -0.084 4.084 26 C -0.153 4.153 27 C -0.102 4.102 28 C -0.136 4.136 29 C 0.092 3.908 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.153 0.847 45 H 0.149 0.851 46 H 0.180 0.820 47 H 0.116 0.884 48 H 0.382 0.618 49 H 0.124 0.876 50 H 0.140 0.860 51 H 0.149 0.851 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.928 1.278 -8.637 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.283 6.283 3 C 0.293 3.707 4 O -0.427 6.427 5 C 0.048 3.952 6 C -0.497 4.497 7 Si 1.294 2.706 8 C -0.563 4.563 9 C -0.562 4.562 10 C -0.386 4.386 11 N -0.313 5.313 12 C 0.281 3.719 13 O -0.446 6.446 14 C -0.029 4.029 15 N -0.151 5.151 16 C -0.070 4.070 17 C -0.220 4.220 18 C -0.159 4.159 19 O -0.364 6.364 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.190 1.190 23 H -0.170 1.170 24 C -0.119 4.119 25 C -0.102 4.102 26 C -0.171 4.171 27 C -0.121 4.121 28 C -0.156 4.156 29 C -0.013 4.013 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.145 0.855 44 H 0.170 0.830 45 H 0.166 0.834 46 H 0.197 0.803 47 H 0.134 0.866 48 H 0.230 0.770 49 H 0.142 0.858 50 H 0.158 0.842 51 H 0.167 0.833 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.119 1.943 -8.501 11.257 hybrid contribution -1.075 -0.724 0.079 1.298 sum 6.044 1.219 -8.422 10.438 Atomic orbital electron populations 1.23453 0.75237 1.05541 1.01919 1.86485 1.24687 1.33393 1.83705 1.24993 0.93817 0.81247 0.70683 1.90600 1.67889 1.37317 1.46884 1.20497 0.85481 0.88797 1.00414 1.27250 1.16361 1.16132 0.89991 0.79058 0.64424 0.62241 0.64926 1.26113 1.15687 1.08106 1.06345 1.26087 1.05639 1.08175 1.16313 1.27858 1.00574 1.01813 1.08387 1.47789 1.53326 1.18073 1.12076 1.21571 0.79110 0.89411 0.81797 1.90778 1.39835 1.51152 1.62866 1.21899 1.04154 0.96084 0.80782 1.43438 1.18832 1.47523 1.05305 1.21882 0.89276 1.00170 0.95720 1.20832 0.99037 1.08850 0.93273 1.24473 0.90885 0.95642 1.04922 1.86451 1.64816 1.47708 1.37416 0.85229 0.78780 0.77434 0.77641 1.18387 1.19044 1.17041 1.19289 0.95762 1.03260 0.93574 1.20485 0.96845 0.97615 0.95294 1.20954 0.95094 1.01012 1.00089 1.21160 1.00411 0.99224 0.91308 1.20266 0.94877 1.01643 0.98824 1.18468 0.96314 1.00413 0.86126 0.91528 0.85111 0.93469 0.87748 0.85490 0.89076 0.89957 0.89448 0.91326 0.90987 0.89535 0.90119 0.88744 0.85525 0.82972 0.83384 0.80321 0.86647 0.76968 0.85798 0.84226 0.83326 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 113.37 1.20 1.36 16 2 O -0.37 -3.50 10.57 -51.42 -0.54 -4.04 16 3 C 0.45 4.54 5.56 71.24 0.40 4.94 16 4 O -0.54 -8.32 15.80 22.90 0.36 -7.96 16 5 C 0.15 0.23 2.53 45.28 0.11 0.35 16 6 C -0.42 2.89 5.48 72.74 0.40 3.29 16 7 Si 1.11 -15.28 13.66 68.60 0.94 -14.34 16 8 C -0.45 5.76 8.65 113.37 0.98 6.74 16 9 C -0.45 5.76 8.65 113.37 0.98 6.74 16 10 C -0.22 2.29 5.48 127.43 0.70 2.99 16 11 N -0.58 0.22 2.52 -604.83 -1.53 -1.31 16 12 C 0.49 2.82 7.03 87.66 0.62 3.44 16 13 O -0.57 -9.38 15.46 -3.02 -0.05 -9.42 16 14 C 0.10 -0.08 5.23 85.63 0.45 0.37 16 15 N -0.47 -3.10 2.27 -519.98 -1.18 -4.28 16 16 C 0.05 0.39 9.89 83.00 0.82 1.21 16 17 C -0.21 -1.94 5.57 -18.63 -0.10 -2.04 16 18 C -0.05 -0.29 3.06 71.23 0.22 -0.08 16 19 O -0.56 -4.78 12.88 -148.98 -1.92 -6.70 16 20 Si 0.99 2.70 26.08 68.60 1.79 4.49 16 21 H -0.26 -0.89 7.03 99.48 0.70 -0.19 16 22 H -0.27 -1.37 7.11 99.48 0.71 -0.67 16 23 H -0.25 -0.53 7.11 99.48 0.71 0.17 16 24 C -0.11 -1.36 6.35 -20.20 -0.13 -1.48 16 25 C -0.08 -0.84 10.05 22.23 0.22 -0.62 16 26 C -0.15 -1.01 9.97 22.03 0.22 -0.80 16 27 C -0.10 -0.51 10.01 22.29 0.22 -0.28 16 28 C -0.14 -0.84 10.00 22.37 0.22 -0.62 16 29 C 0.09 0.89 6.80 39.03 0.27 1.16 16 30 H 0.07 0.25 8.13 -2.39 -0.02 0.24 16 31 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.05 0.38 8.13 -2.39 -0.02 0.36 16 33 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 34 H 0.13 -1.29 8.06 -2.39 -0.02 -1.31 16 35 H 0.09 -0.50 7.76 -2.39 -0.02 -0.52 16 36 H 0.08 -1.03 7.96 -2.39 -0.02 -1.05 16 37 H 0.09 -1.21 7.96 -2.39 -0.02 -1.23 16 38 H 0.07 -0.72 7.96 -2.39 -0.02 -0.74 16 39 H 0.07 -0.80 7.96 -2.39 -0.02 -0.82 16 40 H 0.09 -1.19 7.96 -2.39 -0.02 -1.21 16 41 H 0.08 -1.00 7.96 -2.39 -0.02 -1.01 16 42 H 0.09 -1.01 8.05 -2.39 -0.02 -1.03 16 43 H 0.13 -2.05 7.08 -2.39 -0.02 -2.07 16 44 H 0.15 -1.25 7.58 -2.39 -0.02 -1.27 16 45 H 0.15 -0.94 8.10 -2.39 -0.02 -0.96 16 46 H 0.18 0.47 6.29 -2.91 -0.02 0.45 16 47 H 0.12 0.52 7.96 -2.38 -0.02 0.50 16 48 H 0.38 1.46 8.70 -74.06 -0.64 0.82 16 49 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 50 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 51 H 0.15 -0.11 8.06 -2.91 -0.02 -0.13 16 52 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 Total: 0.00 -33.87 433.53 6.70 -27.17 By element: Atomic # 1 Polarization: -11.31 SS G_CDS: 1.03 Total: -10.27 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 7.79 Total: 26.66 kcal Atomic # 7 Polarization: -2.88 SS G_CDS: -2.71 Total: -5.58 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -2.15 Total: -28.13 kcal Atomic # 14 Polarization: -12.57 SS G_CDS: 2.73 Total: -9.85 kcal Total: -33.87 6.70 -27.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567684_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.151 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds